[u/mrichter/AliRoot.git] / TRD / qaRec / run.C

// Steer TRD QA train for Reconstruction (Clusterizer, Tracking and PID).
// 
// Usage:
//   run.C(tasks, files)
//   tasks : "ALL" or one/more of the following:
//     "EFF"  : TRD Tracking Efficiency 
//     "EFFC" : TRD Tracking Efficiency Combined (barrel + stand alone) - only in case of simulations
//     "RES"  : TRD tracking Resolution
//     "CLRES": clusters Resolution
//     "CAL"  : TRD calibration
//     "ALGN" : TRD alignment
//     "PID"  : TRD PID - pion efficiency 
//     "PIDR" : TRD PID - reference data
//     "DET"  : Basic TRD Detector checks
//     "NOFR" : Data set does not have AliESDfriends.root 
//     "NOMC" : Data set does not have Monte Carlo Informations (real data), so all tasks which rely
//              on MC information are switched off
//
// In compiled mode : 
// Don't forget to load first the libraries
// gSystem->Load("libMemStat.so")
// gSystem->Load("libMemStatGui.so")
// gSystem->Load("libANALYSIS.so")
// gSystem->Load("libTRDqaRec.so")
// gSystem->Load("libNetx.so") ;
// gSystem->Load("libRAliEn.so");
//
// Authors:
//   Alex Bercuci (A.Bercuci@gsi.de) 
//   Markus Fasel (m.Fasel@gsi.de) 

#ifndef __CINT__
#include <Riostream.h>

#include "TStopwatch.h"
#include "TMemStat.h"
#include "TMemStatViewerGUI.h"

#include "TROOT.h"
#include "TSystem.h"
#include "TError.h"
#include "TChain.h"
#include "TGrid.h"
#include "TAlienCollection.h"
#include "TGridCollection.h"
#include "TGridResult.h"

#include "AliMagF.h"
#include "AliTracker.h"
#include "AliLog.h"
#include "AliCDBManager.h"
#include "AliGeomManager.h"
#include "AliAnalysisManager.h"
#include "AliAnalysisDataContainer.h"
#include "AliMCEventHandler.h"
#include "AliESDInputHandler.h"

#include "TRD/AliTRDtrackerV1.h"
#include "TRD/AliTRDcalibDB.h"
#include "TRD/qaRec/AliTRDtrackInfo/AliTRDeventInfo.h"
#include "TRD/qaRec/AliTRDtrackInfoGen.h"
#include "TRD/qaRec/AliTRDtrackingEfficiency.h"
#include "TRD/qaRec/AliTRDtrackingEfficiencyCombined.h"
#include "TRD/qaRec/AliTRDtrackingResolution.h"
#include "TRD/qaRec/AliTRDcalibration.h"
#include "TRD/qaRec/AliTRDalignmentTask.h"
#include "TRD/qaRec/AliTRDpidChecker.h"
#include "TRD/qaRec/AliTRDpidRefMaker.h"
#include "TRD/qaRec/AliTRDcheckDetector.h"
#include "TRD/qaRec/AliTRDclusterResolution.h"
#endif

#include "run.h"

Bool_t MEM = kFALSE;

TChain* MakeChainLST(const char* filename = 0x0);
TChain* MakeChainXML(const char* filename = 0x0);
void run(Char_t *tasks="ALL", const Char_t *files=0x0)
{
  TMemStat *mem = 0x0;
  if(MEM){ 
    gSystem->Load("libMemStat.so");
    gSystem->Load("libMemStatGui.so");
    mem = new TMemStat("new, gnubuildin");
    mem->AddStamp("Start");
  }

  TStopwatch timer;
  timer.Start();

  if(gSystem->Load("libANALYSIS.so")<0) return;
  if(gSystem->Load("libTRDqaRec.so")<0) return;
  
  // DB INITIALIZATION
  // initialize OCDB manager
  AliCDBManager *cdbManager = AliCDBManager::Instance();
  cdbManager->SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  cdbManager->SetRun(0);
  cdbManager->SetCacheFlag(kFALSE);

  // initialize TRD settings
  AliTRDcalibDB *cal = AliTRDcalibDB::Instance();
  AliTRDtrackerV1::SetNTimeBins(cal->GetNumberOfTimeBins());
  AliGeomManager::LoadGeometry();

  Bool_t fHasMCdata = kTRUE;
  Bool_t fHasFriends = kTRUE;
  TObjArray *tasksArray = TString(tasks).Tokenize(" ");

  Int_t fSteerTask = 0; SETBIT(fSteerTask, kInfoGen);
  for(Int_t isel = 0; isel < tasksArray->GetEntriesFast(); isel++){
    TString s = (dynamic_cast<TObjString *>(tasksArray->UncheckedAt(isel)))->String();
    if(s.CompareTo("ALL") == 0){
      for(Int_t itask = 1; itask < NQATASKS; itask++) SETBIT(fSteerTask, itask);
      continue;
    } else if(s.CompareTo("NOFR") == 0){ 
      fHasFriends = kFALSE;
    } else if(s.CompareTo("NOMC") == 0){ 
      fHasMCdata = kFALSE;
    } else { 
      Bool_t foundOpt = kFALSE;  
      for(Int_t itask = 1; itask < NTRDTASKS; itask++){
        if(s.CompareTo(fgkTRDtaskOpt[itask]) != 0) continue;
        SETBIT(fSteerTask, itask);
        foundOpt = kTRUE;
        break;
      }
      if(!foundOpt) Info("run.C", Form("Task %s not implemented (yet).", s.Data()));
    }
  }
  // extra rules for calibration tasks
  if(TSTBIT(fSteerTask, kClErrParam)) SETBIT(fSteerTask, kResolution);
  if(TSTBIT(fSteerTask, kPIDRefMaker)) SETBIT(fSteerTask, kPIDChecker);
  if(TSTBIT(fSteerTask, kAlignment)) SETBIT(fSteerTask, kResolution);

  // define task list pointers;
  AliTRDrecoTask *taskPtr[NTRDTASKS], *task = 0x0;
  memset(taskPtr, 0, NTRDTASKS*sizeof(AliAnalysisTask*));

  //____________________________________________//
  // DEFINE DATA CHAIN
  TChain *chain = 0x0;
  if(!files) chain = MakeChainLST();
  else{
    TString fn(files);
    if(fn.EndsWith("xml")) chain = MakeChainXML(files);
    else chain = MakeChainLST(files);
  }
  if(!chain) return;

  //chain->SetBranchStatus("*", 0);
  chain->SetBranchStatus("*FMD*",0);
  chain->SetBranchStatus("*Calo*",0);
  chain->SetBranchStatus("Tracks", 1);
  chain->SetBranchStatus("ESDfriend*",1);
  chain->Lookup();
  chain->GetListOfFiles()->Print();
  printf("\n ----> CHAIN HAS %d ENTRIES <----\n\n", (Int_t)chain->GetEntries());
  
  AliLog::SetGlobalLogLevel(AliLog::kError);

  //____________________________________________
  // Make the analysis manager
  AliAnalysisManager *mgr = new AliAnalysisManager("TRD QA Reconstruction Manager");
  //mgr->SetSpecialOutputLocation(source); // To Be Changed
  AliVEventHandler *esdH = 0x0, *mcH = 0x0;
  mgr->SetInputEventHandler(esdH = new AliESDInputHandler);
  if(fHasMCdata) mgr->SetMCtruthEventHandler(mcH = new AliMCEventHandler());
  //mgr->SetDebugLevel(10);

  //____________________________________________
  // TRD track summary generator
  mgr->AddTask(task = new AliTRDtrackInfoGen());
  taskPtr[(Int_t)kInfoGen] = task;
  task->SetDebugLevel(1);
  task->SetMCdata(fHasMCdata);
  // Create containers for input/output
  AliAnalysisDataContainer *cinput1 = mgr->CreateContainer("data", TChain::Class(), AliAnalysisManager::kInputContainer);
  AliAnalysisDataContainer *coutput1 = mgr->CreateContainer("trackInfo", TObjArray::Class(), AliAnalysisManager::kExchangeContainer);
  AliAnalysisDataContainer *coutput1a = mgr->CreateContainer("eventInfo", AliTRDeventInfo::Class(), AliAnalysisManager::kExchangeContainer);
  mgr->ConnectInput( task, 0, cinput1);
  mgr->ConnectOutput(task, 0, coutput1);
  mgr->ConnectOutput(task, 1, coutput1a);

  //____________________________________________
  // TRD detector checker
	if(TSTBIT(fSteerTask, kCheckDetector)){
    mgr->AddTask(task = new AliTRDcheckDetector());
    taskPtr[(Int_t)kCheckDetector] = task;
    task->SetDebugLevel(4);
    task->SetMCdata(fHasMCdata);
    
    // Create containers for input/output
    mgr->ConnectInput( task, 0, coutput1);
    mgr->ConnectInput( task, 1, coutput1a);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  }

  //____________________________________________
  // TRD barrel tracking efficiency
  if(fHasMCdata && TSTBIT(fSteerTask, kTrackingEff)){
    mgr->AddTask(task = new AliTRDtrackingEfficiency());
    taskPtr[(Int_t)kTrackingEff] = task;
    task->SetDebugLevel(0);

    //Create containers for input/output
    mgr->ConnectInput( task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  }

  //____________________________________________
  // TRD combined tracking efficiency
  if(fHasMCdata && TSTBIT(fSteerTask, kTrackingEffMC)){
    mgr->AddTask(task = new AliTRDtrackingEfficiencyCombined());
    taskPtr[(Int_t)kTrackingEffMC] = task;
    task->SetDebugLevel(0);

    // Create containers for input/output
    mgr->ConnectInput( task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  }

  //____________________________________________
  // TRD tracking resolution
  if(TSTBIT(fSteerTask, kResolution)){
    mgr->AddTask(task = new AliTRDtrackingResolution());
    taskPtr[(Int_t)kResolution] = task;
    task->SetMCdata(fHasMCdata);
    task->SetPostProcess(kFALSE);
    task->SetDebugLevel(1);
    
    // Create containers for input/output
    mgr->ConnectInput( task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));

    // Create output containers for calibration tasks
    const Int_t nc = 4;
    const Char_t *cn[nc] = {"Cl", "Trklt", "MC_Cl", "MC_Trklt"}; 
    AliAnalysisDataContainer *co[nc]; 
    for(Int_t ic = 0; ic<nc; ic++){
      co[ic] = mgr->CreateContainer(Form("%s%s", task->GetName(), cn[ic]), TObjArray::Class(), AliAnalysisManager::kExchangeContainer);
      mgr->ConnectOutput(task, 1+ic, co[ic]);
    }
    
    // test reconstruction calibration plugin
    if(TSTBIT(fSteerTask, kClErrParam)){
      mgr->AddTask(task = new AliTRDclusterResolution());
      taskPtr[(Int_t)kClErrParam] = task;
      ((AliTRDclusterResolution*)task)->SetExB();
      mgr->ConnectInput(task, 0, co[0]);
      mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  
      mgr->AddTask(task = new AliTRDclusterResolution("ClErrParamMC"));
      taskPtr[(Int_t)kClErrParam+1] = task;
      ((AliTRDclusterResolution*)task)->SetExB();
      mgr->ConnectInput(task, 0, co[2]);
      mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
    }
  }

  //____________________________________________
  // TRD calibration
  if(TSTBIT(fSteerTask, kCalibration)){
    mgr->AddTask(task = new AliTRDcalibration());
    taskPtr[(Int_t)kCalibration] = task;
    ((AliTRDcalibration*)task)->SetLow(0);
    ((AliTRDcalibration*)task)->SetHigh(30);
    ((AliTRDcalibration*)task)->SetFillZero(kFALSE);
    task->SetDebugLevel(0);

    // Create containers for input/output
    mgr->ConnectInput(task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  }
  
  //____________________________________________
  // TRD alignment
  if(TSTBIT(fSteerTask, kAlignment)){
    mgr->AddTask(task = new AliTRDalignmentTask());
    taskPtr[(Int_t)kAlignment] = task;
    task->SetDebugLevel(0);

    // Create containers for input/output
    mgr->ConnectInput(task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(Form("h%s", task->GetName()), TObjArray::Class(), AliAnalysisManager::kExchangeContainer));

    mgr->ConnectOutput(task, 1, mgr->CreateContainer(task->GetName(), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
  }
  
  //____________________________________________
  // TRD PID
  if(TSTBIT(fSteerTask, kPIDChecker)){
    mgr->AddTask(task = new AliTRDpidChecker());
    taskPtr[(Int_t)kPIDChecker] = task;
    task->SetDebugLevel(0);
    task->SetMCdata(fHasMCdata);
    
    // Create containers for input/output
    mgr->ConnectInput( task, 0, coutput1);
    mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));

    //____________________________________________
    // TRD pid reference 
    if(TSTBIT(fSteerTask, kPIDRefMaker)){
      mgr->AddTask(task = new AliTRDpidRefMaker());
      taskPtr[(Int_t)kPIDRefMaker] = task;
      task->SetDebugLevel(0);
      task->SetMCdata(fHasMCdata);
      
      // Create containers for input/output
      mgr->ConnectInput( task, 0, coutput1);
      mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
      mgr->ConnectOutput(task, 1, mgr->CreateContainer(Form("%sNN", task->GetName()), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%sNN.root", task->GetName())));
      mgr->ConnectOutput(task, 2, mgr->CreateContainer(Form("%sLQ", task->GetName()), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%sLQ.root", task->GetName())));
    }
  }


  if (!mgr->InitAnalysis()) return;
  printf("\n\tRUNNING TRAIN FOR TASKS:\n");
  for(Int_t itask = 1; itask < NTRDTASKS; itask++){
    if(TSTBIT(fSteerTask, itask)) printf("\t   %s [%s]\n",  taskPtr[itask]->GetName(), taskPtr[itask]->GetTitle());
  }
  printf("\n\n");
  //mgr->PrintStatus();

  mgr->StartAnalysis("local",chain);

  timer.Stop();
  timer.Print();  

  cal->Terminate();
  delete field;
  delete cdbManager;
  for(Int_t it=NTRDTASKS; it--; ){ 
    if(taskPtr[it]){ 
      printf("Cleaning %s [%s] ...\n", fgkTRDtaskClassName[it], taskPtr[it]->GetTitle());
      delete taskPtr[it];
    }
  }
  if(mcH) delete mcH;
  delete esdH;
  delete mgr;
  delete chain;
  if(MEM) delete mem;
  if(MEM) TMemStatViewerGUI::ShowGUI();
}

//____________________________________________
TChain* MakeChainLST(const char* filename)
{
  // Create the chain
  TChain* chain = new TChain("esdTree");

  if(!filename){
    chain->Add(Form("%s/AliESDs.root", gSystem->pwd()));
    return chain;
  }


  // read ESD files from the input list.
  ifstream in;
  in.open(filename);
  TString esdfile;
  while(in.good()) {
    in >> esdfile;
    if (!esdfile.Contains("root")) continue; // protection
    chain->Add(esdfile.Data());
  }

  in.close();

  return chain;
}

//____________________________________________
TChain* MakeChainXML(const char* xmlfile)
{
  if (!TFile::Open(xmlfile)) {
    Error("MakeChainXML", Form("No file %s was found", xmlfile));
    return 0x0;
  }

  if(gSystem->Load("libNetx.so")<0) return 0x0;
  if(gSystem->Load("libRAliEn.so")<0) return 0x0;
  TGrid::Connect("alien://") ;

  TGridCollection *collection = (TGridCollection*) TAlienCollection::Open(xmlfile);
  if (!collection) {
    Error("MakeChainXML", Form("No collection found in %s", xmlfile)) ; 
    return 0x0; 
  }
  //collection->CheckIfOnline();

  TGridResult* result = collection->GetGridResult("",0 ,0);
  if(!result->GetEntries()){
    Error("MakeChainXML", Form("No entries found in %s", xmlfile)) ; 
    return 0x0; 
  }
  // Makes the ESD chain 
  TChain* chain = new TChain("esdTree");
  for (Int_t idx = 0; idx < result->GetEntries(); idx++) {
    chain->Add(result->GetKey(idx, "turl")); 
  }
  return chain;
}
Commit	Line	Data
77203477	1	// Steer TRD QA train for Reconstruction (Clusterizer, Tracking and PID).
	2	//
	3	// Usage:
e15179be	4	// run.C(tasks, files)
77203477	5	// tasks : "ALL" or one/more of the following:
	6	// "EFF" : TRD Tracking Efficiency
	7	// "EFFC" : TRD Tracking Efficiency Combined (barrel + stand alone) - only in case of simulations
	8	// "RES" : TRD tracking Resolution
5198d8c6	9	// "CLRES": clusters Resolution
ba2773d0	10	// "CAL" : TRD calibration
56bb0e8e	11	// "ALGN" : TRD alignment
77203477	12	// "PID" : TRD PID - pion efficiency
77203477	13	// "PIDR" : TRD PID - reference data
2b468513	14	// "DET" : Basic TRD Detector checks
28efdace	15	// "NOFR" : Data set does not have AliESDfriends.root
4b8f8a35	16	// "NOMC" : Data set does not have Monte Carlo Informations (real data), so all tasks which rely
4b8f8a35	17	// on MC information are switched off
2c0cf367	18	//
	19	// In compiled mode :
	20	// Don't forget to load first the libraries
	21	// gSystem->Load("libMemStat.so")
	22	// gSystem->Load("libMemStatGui.so")
	23	// gSystem->Load("libANALYSIS.so")
	24	// gSystem->Load("libTRDqaRec.so")
e15179be	25	// gSystem->Load("libNetx.so") ;
e15179be	26	// gSystem->Load("libRAliEn.so");
2c0cf367	27	//
77203477	28	// Authors:
	29	// Alex Bercuci (A.Bercuci@gsi.de)
	30	// Markus Fasel (m.Fasel@gsi.de)
	31
819f5b0f	32	#ifndef __CINT__
8cc0ed91	33	#include <Riostream.h>
8cc0ed91	34
819f5b0f	35	#include "TStopwatch.h"
	36	#include "TMemStat.h"
	37	#include "TMemStatViewerGUI.h"
	38
	39	#include "TROOT.h"
	40	#include "TSystem.h"
8cc0ed91	41	#include "TError.h"
819f5b0f	42	#include "TChain.h"
e15179be	43	#include "TGrid.h"
	44	#include "TAlienCollection.h"
	45	#include "TGridCollection.h"
	46	#include "TGridResult.h"
819f5b0f	47
f7a1cc68	48	#include "AliMagF.h"
8cc0ed91	49	#include "AliTracker.h"
819f5b0f	50	#include "AliLog.h"
819f5b0f	51	#include "AliCDBManager.h"
e15179be	52	#include "AliGeomManager.h"
819f5b0f	53	#include "AliAnalysisManager.h"
819f5b0f	54	#include "AliAnalysisDataContainer.h"
8cc0ed91	55	#include "AliMCEventHandler.h"
8cc0ed91	56	#include "AliESDInputHandler.h"
819f5b0f	57
8cc0ed91	58	#include "TRD/AliTRDtrackerV1.h"
8cc0ed91	59	#include "TRD/AliTRDcalibDB.h"
4c0f3c82	60	#include "TRD/qaRec/AliTRDtrackInfo/AliTRDeventInfo.h"
819f5b0f	61	#include "TRD/qaRec/AliTRDtrackInfoGen.h"
8cc0ed91	62	#include "TRD/qaRec/AliTRDtrackingEfficiency.h"
	63	#include "TRD/qaRec/AliTRDtrackingEfficiencyCombined.h"
	64	#include "TRD/qaRec/AliTRDtrackingResolution.h"
	65	#include "TRD/qaRec/AliTRDcalibration.h"
e15179be	66	#include "TRD/qaRec/AliTRDalignmentTask.h"
3d86166d	67	#include "TRD/qaRec/AliTRDpidChecker.h"
28efdace	68	#include "TRD/qaRec/AliTRDpidRefMaker.h"
2b468513	69	#include "TRD/qaRec/AliTRDcheckDetector.h"
5198d8c6	70	#include "TRD/qaRec/AliTRDclusterResolution.h"
819f5b0f	71	#endif
819f5b0f	72
3d86166d	73	#include "run.h"
3d86166d	74
819f5b0f	75	Bool_t MEM = kFALSE;
8cc0ed91	76
e15179be	77	TChain* MakeChainLST(const char* filename = 0x0);
	78	TChain* MakeChainXML(const char* filename = 0x0);
	79	void run(Char_t tasks="ALL", const Char_t files=0x0)
77203477	80	{
819f5b0f	81	TMemStat *mem = 0x0;
8cc0ed91	82	if(MEM){
	83	gSystem->Load("libMemStat.so");
	84	gSystem->Load("libMemStatGui.so");
	85	mem = new TMemStat("new, gnubuildin");
	86	mem->AddStamp("Start");
	87	}
77203477	88
814ecea4	89	TStopwatch timer;
814ecea4	90	timer.Start();
814ecea4	91
107fde80	92	if(gSystem->Load("libANALYSIS.so")<0) return;
107fde80	93	if(gSystem->Load("libTRDqaRec.so")<0) return;
77203477	94
6bc4a8f4	95	// DB INITIALIZATION
	96	// initialize OCDB manager
	97	AliCDBManager *cdbManager = AliCDBManager::Instance();
162637e4	98	cdbManager->SetDefaultStorage("local://$ALICE_ROOT/OCDB");
6bc4a8f4	99	cdbManager->SetRun(0);
6bc4a8f4	100	cdbManager->SetCacheFlag(kFALSE);
6fc46cba	101
6bc4a8f4	102	// initialize TRD settings
	103	AliTRDcalibDB *cal = AliTRDcalibDB::Instance();
	104	AliTRDtrackerV1::SetNTimeBins(cal->GetNumberOfTimeBins());
	105	AliGeomManager::LoadGeometry();
	106
d2381af5	107	Bool_t fHasMCdata = kTRUE;
28efdace	108	Bool_t fHasFriends = kTRUE;
773d3f8c	109	TObjArray *tasksArray = TString(tasks).Tokenize(" ");
28efdace	110
28efdace	111	Int_t fSteerTask = 0; SETBIT(fSteerTask, kInfoGen);
773d3f8c	112	for(Int_t isel = 0; isel < tasksArray->GetEntriesFast(); isel++){
773d3f8c	113	TString s = (dynamic_cast<TObjString *>(tasksArray->UncheckedAt(isel)))->String();
77203477	114	if(s.CompareTo("ALL") == 0){
e15179be	115	for(Int_t itask = 1; itask < NQATASKS; itask++) SETBIT(fSteerTask, itask);
77203477	116	continue;
28efdace	117	} else if(s.CompareTo("NOFR") == 0){
	118	fHasFriends = kFALSE;
	119	} else if(s.CompareTo("NOMC") == 0){
d2381af5	120	fHasMCdata = kFALSE;
28efdace	121	} else {
28efdace	122	Bool_t foundOpt = kFALSE;
e15179be	123	for(Int_t itask = 1; itask < NTRDTASKS; itask++){
4c0f3c82	124	if(s.CompareTo(fgkTRDtaskOpt[itask]) != 0) continue;
28efdace	125	SETBIT(fSteerTask, itask);
	126	foundOpt = kTRUE;
	127	break;
	128	}
	129	if(!foundOpt) Info("run.C", Form("Task %s not implemented (yet).", s.Data()));
77203477	130	}
77203477	131	}
5198d8c6	132	// extra rules for calibration tasks
e15179be	133	if(TSTBIT(fSteerTask, kClErrParam)) SETBIT(fSteerTask, kResolution);
	134	if(TSTBIT(fSteerTask, kPIDRefMaker)) SETBIT(fSteerTask, kPIDChecker);
	135	if(TSTBIT(fSteerTask, kAlignment)) SETBIT(fSteerTask, kResolution);
5198d8c6	136
8cc0ed91	137	// define task list pointers;
e15179be	138	AliTRDrecoTask taskPtr[NTRDTASKS], task = 0x0;
e15179be	139	memset(taskPtr, 0, NTRDTASKSsizeof(AliAnalysisTask));
8cc0ed91	140
814ecea4	141	//____________________________________________//
e15179be	142	// DEFINE DATA CHAIN
	143	TChain *chain = 0x0;
	144	if(!files) chain = MakeChainLST();
	145	else{
	146	TString fn(files);
	147	if(fn.EndsWith("xml")) chain = MakeChainXML(files);
	148	else chain = MakeChainLST(files);
	149	}
	150	if(!chain) return;
	151
814ecea4	152	//chain->SetBranchStatus("*", 0);
	153	chain->SetBranchStatus("FMD",0);
	154	chain->SetBranchStatus("Calo",0);
	155	chain->SetBranchStatus("Tracks", 1);
	156	chain->SetBranchStatus("ESDfriend*",1);
	157	chain->Lookup();
	158	chain->GetListOfFiles()->Print();
	159	printf("\n ----> CHAIN HAS %d ENTRIES <----\n\n", (Int_t)chain->GetEntries());
	160
	161	AliLog::SetGlobalLogLevel(AliLog::kError);
	162
	163	//____________________________________________
	164	// Make the analysis manager
3d86166d	165	AliAnalysisManager *mgr = new AliAnalysisManager("TRD QA Reconstruction Manager");
814ecea4	166	//mgr->SetSpecialOutputLocation(source); // To Be Changed
8cc0ed91	167	AliVEventHandler esdH = 0x0, mcH = 0x0;
	168	mgr->SetInputEventHandler(esdH = new AliESDInputHandler);
	169	if(fHasMCdata) mgr->SetMCtruthEventHandler(mcH = new AliMCEventHandler());
814ecea4	170	//mgr->SetDebugLevel(10);
	171
	172	//____________________________________________
	173	// TRD track summary generator
773d3f8c	174	mgr->AddTask(task = new AliTRDtrackInfoGen());
3d86166d	175	taskPtr[(Int_t)kInfoGen] = task;
b718144c	176	task->SetDebugLevel(1);
3d86166d	177	task->SetMCdata(fHasMCdata);
814ecea4	178	// Create containers for input/output
814ecea4	179	AliAnalysisDataContainer *cinput1 = mgr->CreateContainer("data", TChain::Class(), AliAnalysisManager::kInputContainer);
421fb961	180	AliAnalysisDataContainer *coutput1 = mgr->CreateContainer("trackInfo", TObjArray::Class(), AliAnalysisManager::kExchangeContainer);
421fb961	181	AliAnalysisDataContainer *coutput1a = mgr->CreateContainer("eventInfo", AliTRDeventInfo::Class(), AliAnalysisManager::kExchangeContainer);
773d3f8c	182	mgr->ConnectInput( task, 0, cinput1);
773d3f8c	183	mgr->ConnectOutput(task, 0, coutput1);
421fb961	184	mgr->ConnectOutput(task, 1, coutput1a);
814ecea4	185
28efdace	186	//____________________________________________
28efdace	187	// TRD detector checker
10557e39	188	if(TSTBIT(fSteerTask, kCheckDetector)){
28efdace	189	mgr->AddTask(task = new AliTRDcheckDetector());
28efdace	190	taskPtr[(Int_t)kCheckDetector] = task;
9e548ae7	191	task->SetDebugLevel(4);
28efdace	192	task->SetMCdata(fHasMCdata);
	193
	194	// Create containers for input/output
	195	mgr->ConnectInput( task, 0, coutput1);
421fb961	196	mgr->ConnectInput( task, 1, coutput1a);
28efdace	197	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
	198	}
	199
814ecea4	200	//____________________________________________
814ecea4	201	// TRD barrel tracking efficiency
e15179be	202	if(fHasMCdata && TSTBIT(fSteerTask, kTrackingEff)){
773d3f8c	203	mgr->AddTask(task = new AliTRDtrackingEfficiency());
e15179be	204	taskPtr[(Int_t)kTrackingEff] = task;
3d86166d	205	task->SetDebugLevel(0);
3d86166d	206
77203477	207	//Create containers for input/output
773d3f8c	208	mgr->ConnectInput( task, 0, coutput1);
28efdace	209	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
77203477	210	}
814ecea4	211
	212	//____________________________________________
	213	// TRD combined tracking efficiency
e15179be	214	if(fHasMCdata && TSTBIT(fSteerTask, kTrackingEffMC)){
773d3f8c	215	mgr->AddTask(task = new AliTRDtrackingEfficiencyCombined());
e15179be	216	taskPtr[(Int_t)kTrackingEffMC] = task;
3d86166d	217	task->SetDebugLevel(0);
773d3f8c	218
77203477	219	// Create containers for input/output
773d3f8c	220	mgr->ConnectInput( task, 0, coutput1);
28efdace	221	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
77203477	222	}
814ecea4	223
77203477	224	//____________________________________________
e26505aa	225	// TRD tracking resolution
e15179be	226	if(TSTBIT(fSteerTask, kResolution)){
773d3f8c	227	mgr->AddTask(task = new AliTRDtrackingResolution());
e15179be	228	taskPtr[(Int_t)kResolution] = task;
3d86166d	229	task->SetMCdata(fHasMCdata);
2b468513	230	task->SetPostProcess(kFALSE);
b718144c	231	task->SetDebugLevel(1);
3d86166d	232
77203477	233	// Create containers for input/output
773d3f8c	234	mgr->ConnectInput( task, 0, coutput1);
28efdace	235	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
b2dc316d	236
5198d8c6	237	// Create output containers for calibration tasks
6fc46cba	238	const Int_t nc = 4;
6fc46cba	239	const Char_t *cn[nc] = {"Cl", "Trklt", "MC_Cl", "MC_Trklt"};
5198d8c6	240	AliAnalysisDataContainer *co[nc];
	241	for(Int_t ic = 0; ic<nc; ic++){
	242	co[ic] = mgr->CreateContainer(Form("%s%s", task->GetName(), cn[ic]), TObjArray::Class(), AliAnalysisManager::kExchangeContainer);
	243	mgr->ConnectOutput(task, 1+ic, co[ic]);
	244	}
b2dc316d	245
b2dc316d	246	// test reconstruction calibration plugin
e15179be	247	if(TSTBIT(fSteerTask, kClErrParam)){
5198d8c6	248	mgr->AddTask(task = new AliTRDclusterResolution());
e15179be	249	taskPtr[(Int_t)kClErrParam] = task;
6bc4a8f4	250	((AliTRDclusterResolution*)task)->SetExB();
5198d8c6	251	mgr->ConnectInput(task, 0, co[0]);
	252	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
	253
6fc46cba	254	mgr->AddTask(task = new AliTRDclusterResolution("ClErrParamMC"));
e15179be	255	taskPtr[(Int_t)kClErrParam+1] = task;
6bc4a8f4	256	((AliTRDclusterResolution*)task)->SetExB();
6fc46cba	257	mgr->ConnectInput(task, 0, co[2]);
6fc46cba	258	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
5198d8c6	259	}
77203477	260	}
814ecea4	261
ba2773d0	262	//____________________________________________
ba2773d0	263	// TRD calibration
10557e39	264	if(TSTBIT(fSteerTask, kCalibration)){
773d3f8c	265	mgr->AddTask(task = new AliTRDcalibration());
3d86166d	266	taskPtr[(Int_t)kCalibration] = task;
773d3f8c	267	((AliTRDcalibration*)task)->SetLow(0);
773d3f8c	268	((AliTRDcalibration*)task)->SetHigh(30);
773d3f8c	269	((AliTRDcalibration*)task)->SetFillZero(kFALSE);
3d86166d	270	task->SetDebugLevel(0);
3d86166d	271
ba2773d0	272	// Create containers for input/output
773d3f8c	273	mgr->ConnectInput(task, 0, coutput1);
28efdace	274	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
ba2773d0	275	}
ba2773d0	276
56bb0e8e	277	//____________________________________________
	278	// TRD alignment
	279	if(TSTBIT(fSteerTask, kAlignment)){
	280	mgr->AddTask(task = new AliTRDalignmentTask());
	281	taskPtr[(Int_t)kAlignment] = task;
	282	task->SetDebugLevel(0);
	283
	284	// Create containers for input/output
	285	mgr->ConnectInput(task, 0, coutput1);
	286	mgr->ConnectOutput(task, 0, mgr->CreateContainer(Form("h%s", task->GetName()), TObjArray::Class(), AliAnalysisManager::kExchangeContainer));
	287
	288	mgr->ConnectOutput(task, 1, mgr->CreateContainer(task->GetName(), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
	289	}
	290
773d3f8c	291	//____________________________________________
e15179be	292	// TRD PID
10557e39	293	if(TSTBIT(fSteerTask, kPIDChecker)){
773d3f8c	294	mgr->AddTask(task = new AliTRDpidChecker());
3d86166d	295	taskPtr[(Int_t)kPIDChecker] = task;
3d86166d	296	task->SetDebugLevel(0);
c7cf2032	297	task->SetMCdata(fHasMCdata);
3d86166d	298
773d3f8c	299	// Create containers for input/output
773d3f8c	300	mgr->ConnectInput( task, 0, coutput1);
28efdace	301	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
28efdace	302
e15179be	303	//____________________________________________
	304	// TRD pid reference
	305	if(TSTBIT(fSteerTask, kPIDRefMaker)){
	306	mgr->AddTask(task = new AliTRDpidRefMaker());
	307	taskPtr[(Int_t)kPIDRefMaker] = task;
	308	task->SetDebugLevel(0);
	309	task->SetMCdata(fHasMCdata);
	310
	311	// Create containers for input/output
	312	mgr->ConnectInput( task, 0, coutput1);
	313	mgr->ConnectOutput(task, 0, mgr->CreateContainer(task->GetName(), TObjArray::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%s.root", task->GetName())));
	314	mgr->ConnectOutput(task, 1, mgr->CreateContainer(Form("%sNN", task->GetName()), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%sNN.root", task->GetName())));
	315	mgr->ConnectOutput(task, 2, mgr->CreateContainer(Form("%sLQ", task->GetName()), TTree::Class(), AliAnalysisManager::kOutputContainer, Form("TRD.Task%sLQ.root", task->GetName())));
	316	}
2b468513	317	}
2b468513	318
28efdace	319
814ecea4	320	if (!mgr->InitAnalysis()) return;
3d86166d	321	printf("\n\tRUNNING TRAIN FOR TASKS:\n");
e15179be	322	for(Int_t itask = 1; itask < NTRDTASKS; itask++){
e15179be	323	if(TSTBIT(fSteerTask, itask)) printf("\t %s [%s]\n", taskPtr[itask]->GetName(), taskPtr[itask]->GetTitle());
3d86166d	324	}
3d86166d	325	printf("\n\n");
d85cd79c	326	//mgr->PrintStatus();
819f5b0f	327
814ecea4	328	mgr->StartAnalysis("local",chain);
	329
	330	timer.Stop();
819f5b0f	331	timer.Print();
819f5b0f	332
2c0cf367	333	cal->Terminate();
8cc0ed91	334	delete field;
8cc0ed91	335	delete cdbManager;
e15179be	336	for(Int_t it=NTRDTASKS; it--; ){
	337	if(taskPtr[it]){
	338	printf("Cleaning %s [%s] ...\n", fgkTRDtaskClassName[it], taskPtr[it]->GetTitle());
	339	delete taskPtr[it];
	340	}
94f34623	341	}
8cc0ed91	342	if(mcH) delete mcH;
	343	delete esdH;
	344	delete mgr;
	345	delete chain;
819f5b0f	346	if(MEM) delete mem;
819f5b0f	347	if(MEM) TMemStatViewerGUI::ShowGUI();
814ecea4	348	}
8cc0ed91	349
e15179be	350	//____________________________________________
e15179be	351	TChain* MakeChainLST(const char* filename)
8cc0ed91	352	{
	353	// Create the chain
	354	TChain* chain = new TChain("esdTree");
	355
	356	if(!filename){
	357	chain->Add(Form("%s/AliESDs.root", gSystem->pwd()));
	358	return chain;
	359	}
	360
	361
	362	// read ESD files from the input list.
	363	ifstream in;
	364	in.open(filename);
	365	TString esdfile;
e15179be	366	while(in.good()) {
8cc0ed91	367	in >> esdfile;
	368	if (!esdfile.Contains("root")) continue; // protection
	369	chain->Add(esdfile.Data());
	370	}
	371
	372	in.close();
	373
	374	return chain;
	375	}
e15179be	376
	377	//____________________________________________
	378	TChain* MakeChainXML(const char* xmlfile)
	379	{
	380	if (!TFile::Open(xmlfile)) {
	381	Error("MakeChainXML", Form("No file %s was found", xmlfile));
	382	return 0x0;
	383	}
	384
	385	if(gSystem->Load("libNetx.so")<0) return 0x0;
	386	if(gSystem->Load("libRAliEn.so")<0) return 0x0;
	387	TGrid::Connect("alien://") ;
	388
	389	TGridCollection collection = (TGridCollection) TAlienCollection::Open(xmlfile);
	390	if (!collection) {
	391	Error("MakeChainXML", Form("No collection found in %s", xmlfile)) ;
	392	return 0x0;
	393	}
	394	//collection->CheckIfOnline();
	395
	396	TGridResult* result = collection->GetGridResult("",0 ,0);
	397	if(!result->GetEntries()){
	398	Error("MakeChainXML", Form("No entries found in %s", xmlfile)) ;
	399	return 0x0;
	400	}
	401	// Makes the ESD chain
	402	TChain* chain = new TChain("esdTree");
	403	for (Int_t idx = 0; idx < result->GetEntries(); idx++) {
	404	chain->Add(result->GetKey(idx, "turl"));
	405	}
	406	return chain;
	407	}