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1 | // -*- mode: c++ -*- | |
2 | /************************************************************************** | |
3 | * This file is property of and copyright by * | |
4 | * the Relativistic Heavy Ion Group (RHIG), Yale University, US, 2009 * | |
5 | * * | |
6 | * Primary Author: Per Thomas Hille <perthomas.hille@yale.edu> * | |
7 | * * | |
8 | * Contributors are mentioned in the code where appropriate. * | |
9 | * Please report bugs to perthomas.hille@yale.edu * | |
10 | * * | |
11 | * Permission to use, copy, modify and distribute this software and its * | |
12 | * documentation strictly for non-commercial purposes is hereby granted * | |
13 | * without fee, provided that the above copyright notice appears in all * | |
14 | * copies and that both the copyright notice and this permission notice * | |
15 | * appear in the supporting documentation. The authors make no claims * | |
16 | * about the suitability of this software for any purpose. It is * | |
17 | * provided "as is" without express or implied warranty. * | |
18 | **************************************************************************/ | |
19 | ||
20 | // The Peak-Finder algorithm | |
21 | // The amplitude is extracted as a | |
22 | // weighted sum of the samples using the | |
23 | // best possible weights. | |
24 | // The wights is calculated only once and the | |
25 | // Actual extraction of amplitude and peak position | |
26 | // Is done with a simple vector multiplication, allowing for | |
27 | // Extreemely fast computations. | |
28 | ||
29 | #include "AliCaloRawAnalyzerPeakFinder.h" | |
30 | #include "AliCaloBunchInfo.h" | |
31 | #include "AliCaloFitResults.h" | |
32 | #include "TMath.h" | |
33 | #include "AliLog.h" | |
34 | #include "AliCDBEntry.h" | |
35 | #include "AliCDBManager.h" | |
36 | #include "TFile.h" | |
37 | #include "AliCaloPeakFinderVectors.h" | |
38 | #include <iostream> | |
39 | ||
40 | using namespace std; | |
41 | ||
42 | ||
43 | ClassImp( AliCaloRawAnalyzerPeakFinder ) | |
44 | ||
45 | ||
46 | AliCaloRawAnalyzerPeakFinder::AliCaloRawAnalyzerPeakFinder() :AliCaloRawAnalyzer("Peak-Finder", "PF"), | |
47 | fPeakFinderVectors(0), | |
48 | fRunOnAlien(false), | |
49 | fIsInitialized(false) | |
50 | { | |
51 | //Comment | |
52 | fAlgo= Algo::kPeakFinder; | |
53 | InitOCDB(fRunOnAlien); | |
54 | fPeakFinderVectors = new AliCaloPeakFinderVectors() ; | |
55 | ResetVectors(); | |
56 | LoadVectorsOCDB(); | |
57 | } | |
58 | ||
59 | ||
60 | void | |
61 | AliCaloRawAnalyzerPeakFinder::InitOCDB(bool alien) const | |
62 | { | |
63 | // Setting the default OCDB pathe depending on wether we work locally or on the GRID. | |
64 | if( !AliCDBManager::Instance()->IsDefaultStorageSet ()) | |
65 | { | |
66 | AliCDBManager::Instance()->SetDefaultStorage( alien == true ? "alien://$ALICE_ROOT/OCDB" : "local://$ALICE_ROOT/OCDB" ); | |
67 | AliCDBManager::Instance()->SetRun(100); | |
68 | } | |
69 | } | |
70 | ||
71 | ||
72 | void | |
73 | AliCaloRawAnalyzerPeakFinder::ResetVectors() | |
74 | { | |
75 | //As name implies | |
76 | for(int i=0; i < PF::MAXSTART; i++) | |
77 | { | |
78 | for(int j=0; j < PF::SAMPLERANGE; j++ ) | |
79 | { | |
80 | for(int k=0; k < 100; k++ ) | |
81 | { | |
82 | fPFAmpVectors[i][j][k] = 0; | |
83 | fPFTofVectors[i][j][k] = 0; | |
84 | fPFAmpVectorsCoarse[i][j][k] = 0; | |
85 | fPFTofVectorsCoarse[i][j][k] = 0; | |
86 | } | |
87 | } | |
88 | } | |
89 | } | |
90 | ||
91 | ||
92 | AliCaloRawAnalyzerPeakFinder::~AliCaloRawAnalyzerPeakFinder() | |
93 | { | |
94 | //comment | |
95 | } | |
96 | ||
97 | ||
98 | Double_t | |
99 | AliCaloRawAnalyzerPeakFinder::ScanCoarse(const Double_t *const array, const int length ) const | |
100 | { | |
101 | // Fisrt (coarce) estimate of Amplitude using the Peak-Finder. | |
102 | // The output of the first iteration is sued to select vectors | |
103 | // for the second iteration. | |
104 | ||
105 | Double_t tmpTof = 0; | |
106 | Double_t tmpAmp= 0; | |
107 | ||
108 | for(int i=0; i < length; i++) | |
109 | { | |
110 | tmpTof += fPFTofVectorsCoarse[0][length][i]*array[i]; | |
111 | tmpAmp += fPFAmpVectorsCoarse[0][length][i]*array[i]; | |
112 | } | |
113 | ||
114 | tmpTof = tmpTof / tmpAmp ; | |
115 | return tmpTof; | |
116 | } | |
117 | ||
118 | ||
119 | AliCaloFitResults | |
120 | AliCaloRawAnalyzerPeakFinder::Evaluate( const vector<AliCaloBunchInfo> &bunchvector, const UInt_t altrocfg1, const UInt_t altrocfg2 ) | |
121 | { | |
122 | // Evaluation of amplitude and TOF | |
123 | if( fIsInitialized == false ) | |
124 | { | |
125 | cout << __FILE__ << ":" << __LINE__ << "ERROR, peakfinder vectors not loaded" << endl; | |
126 | return AliCaloFitResults(kInvalid, kInvalid); | |
127 | } | |
128 | ||
129 | // Extracting the amplitude using the Peak-Finder algorithm | |
130 | // The amplitude is a weighted sum of the samples using | |
131 | // optimum weights. | |
132 | ||
133 | short maxampindex; //index of maximum amplitude | |
134 | short maxamp; //Maximum amplitude | |
135 | fAmp = 0; | |
136 | int index = SelectBunch( bunchvector, &maxampindex, &maxamp ); | |
137 | ||
138 | if( index >= 0) | |
139 | { | |
140 | Float_t ped = ReverseAndSubtractPed( &(bunchvector.at(index)) , altrocfg1, altrocfg2, fReversed ); | |
141 | Float_t maxf = TMath::MaxElement( bunchvector.at(index).GetLength(), fReversed ); | |
142 | short timebinOffset = maxampindex - (bunchvector.at( index ).GetLength()-1); | |
143 | ||
144 | if( maxf < fAmpCut || ( maxamp - ped) > fOverflowCut ) // (maxamp - ped) > fOverflowCut = Close to saturation (use low gain then) | |
145 | { | |
146 | return AliCaloFitResults( maxamp, ped, Ret::kCrude, maxf, timebinOffset); | |
147 | } | |
148 | else if ( maxf >= fAmpCut ) | |
149 | { | |
150 | int first = 0; | |
151 | int last = 0; | |
152 | short maxrev = maxampindex - bunchvector.at(index).GetStartBin(); | |
153 | SelectSubarray( fReversed, bunchvector.at(index).GetLength(), maxrev, &first, &last, fFitArrayCut); | |
154 | int nsamples = last - first; | |
155 | ||
156 | if( ( nsamples ) >= fNsampleCut ) // no if statement needed really; keep for readability | |
157 | { | |
158 | int startbin = bunchvector.at(index).GetStartBin(); | |
159 | int n = last - first; | |
160 | int pfindex = n - fNsampleCut; | |
161 | pfindex = pfindex > PF::SAMPLERANGE ? PF::SAMPLERANGE : pfindex; | |
162 | ||
163 | int dt = maxampindex - startbin -2; | |
164 | int tmpindex = 0; | |
165 | ||
166 | ||
167 | Float_t tmptof = ScanCoarse( &fReversed[dt] , n ); | |
168 | ||
169 | if( tmptof < -1 ) | |
170 | { | |
171 | tmpindex = 0; | |
172 | } | |
173 | else | |
174 | if( tmptof > -1 && tmptof < 100 ) | |
175 | { | |
176 | tmpindex = 1; | |
177 | } | |
178 | else | |
179 | { | |
180 | tmpindex = 2; | |
181 | } | |
182 | ||
183 | double tof = 0; | |
184 | ||
185 | for(int k=0; k < PF::SAMPLERANGE; k++ ) | |
186 | { | |
187 | tof += fPFTofVectors[0][pfindex][k]*fReversed[ dt +k + tmpindex -1 ]; | |
188 | } | |
189 | ||
190 | for( int i=0; i < PF::SAMPLERANGE; i++ ) | |
191 | { | |
192 | { | |
193 | fAmp += fPFAmpVectors[0][pfindex][i]*fReversed[ dt +i +tmpindex -1 ]; | |
194 | } | |
195 | } | |
196 | if( TMath::Abs( (maxf - fAmp )/maxf ) > 0.1 ) | |
197 | { | |
198 | fAmp = maxf; | |
199 | } | |
200 | ||
201 | tof = timebinOffset - 0.01*tof/fAmp - fL1Phase/TIMEBINWITH; // clock | |
202 | ||
203 | // use local-array time for chi2 estimate | |
204 | Float_t chi2 = CalculateChi2(fAmp, tof-timebinOffset+maxrev, first, last); | |
205 | Int_t ndf = last - first - 1; // nsamples - 2 | |
206 | return AliCaloFitResults( maxamp, ped , Ret::kFitPar, fAmp, tof, | |
207 | timebinOffset, chi2, ndf, | |
208 | Ret::kDummy, AliCaloFitSubarray(index, maxrev, first, last) ); | |
209 | } | |
210 | else | |
211 | { | |
212 | Float_t chi2 = CalculateChi2(maxf, maxrev, first, last); | |
213 | Int_t ndf = last - first - 1; // nsamples - 2 | |
214 | return AliCaloFitResults( maxamp, ped , Ret::kCrude, maxf, timebinOffset, | |
215 | timebinOffset, chi2, ndf, Ret::kDummy, AliCaloFitSubarray(index, maxrev, first, last) ); | |
216 | } | |
217 | } // ampcut | |
218 | } | |
219 | return AliCaloFitResults(kInvalid, kInvalid); | |
220 | } | |
221 | ||
222 | ||
223 | void | |
224 | AliCaloRawAnalyzerPeakFinder::CopyVectors( const AliCaloPeakFinderVectors *const pfv ) | |
225 | { | |
226 | // As name implies | |
227 | if ( pfv != 0) | |
228 | { | |
229 | for(int i = 0; i < PF::MAXSTART ; i++) | |
230 | { | |
231 | for( int j=0; j < PF::SAMPLERANGE; j++) | |
232 | { | |
233 | pfv->GetVector( i, j, fPFAmpVectors[i][j] , fPFTofVectors[i][j], | |
234 | fPFAmpVectorsCoarse[i][j] , fPFTofVectorsCoarse[i][j] ); | |
235 | ||
236 | fPeakFinderVectors->SetVector( i, j, fPFAmpVectors[i][j], fPFTofVectors[i][j], | |
237 | fPFAmpVectorsCoarse[i][j], fPFTofVectorsCoarse[i][j] ); | |
238 | } | |
239 | } | |
240 | } | |
241 | else | |
242 | { | |
243 | AliFatal( "pfv = ZERO !!!!!!!"); | |
244 | } | |
245 | } | |
246 | ||
247 | ||
248 | void | |
249 | AliCaloRawAnalyzerPeakFinder::LoadVectorsOCDB() | |
250 | { | |
251 | //Loading of Peak-Finder vectors from the | |
252 | //Offline Condition Database (OCDB) | |
253 | AliCDBEntry* entry = AliCDBManager::Instance()->Get("EMCAL/Calib/PeakFinder/"); | |
254 | ||
255 | if( entry != 0 ) | |
256 | { | |
257 | //cout << __FILE__ << ":" << __LINE__ << ": Printing metadata !! " << endl; | |
258 | //entry->PrintMetaData(); | |
259 | AliCaloPeakFinderVectors *pfv = (AliCaloPeakFinderVectors *)entry->GetObject(); | |
260 | if( pfv == 0 ) | |
261 | { | |
262 | cout << __FILE__ << ":" << __LINE__ << "_ ERRROR " << endl; | |
263 | } | |
264 | CopyVectors( pfv ); | |
265 | ||
266 | if( pfv != 0 ) | |
267 | { | |
268 | fIsInitialized = true; | |
269 | } | |
270 | } | |
271 | } | |
272 | ||
273 | ||
274 | void | |
275 | AliCaloRawAnalyzerPeakFinder::LoadVectorsASCII() | |
276 | { | |
277 | //Read in the Peak finder vecors from ASCI files | |
278 | fIsInitialized= true; | |
279 | const Int_t buffersize = 256; | |
280 | for(int i = 0; i < PF::MAXSTART ; i++) | |
281 | { | |
282 | for( int j=0; j < PF::SAMPLERANGE; j++) | |
283 | { | |
284 | char filenameCoarse[buffersize]; | |
285 | char filename[buffersize]; | |
286 | int n = j+fNsampleCut; | |
287 | double start = (double)i+0; | |
288 | ||
289 | snprintf(filename, buffersize, "%s/EMCAL/vectors-emcal/start%.1fN%dtau0.235fs10dt1.0.txt", getenv("ALICE_ROOT"), start, n); | |
290 | snprintf(filenameCoarse, buffersize, "%s/EMCAL/vectors-emcal/start%.1fN%dtau0.235fs10dt3.0.txt", getenv("ALICE_ROOT"), start, n); | |
291 | ||
292 | FILE *fp = fopen(filename, "r"); | |
293 | FILE *fpc = fopen(filenameCoarse, "r"); | |
294 | ||
295 | if( fp == 0 ) | |
296 | { | |
297 | AliFatal( Form( "could not open file: %s", filename ) ); | |
298 | } | |
299 | else if(fpc == 0) | |
300 | { | |
301 | AliFatal( Form( "could not open file: %s", filenameCoarse ) ); | |
302 | } | |
303 | else | |
304 | { | |
305 | for(int m = 0; m < n ; m++ ) | |
306 | { | |
307 | fscanf(fp, "%lf\t", &fPFAmpVectors[i][j][m] ); | |
308 | fscanf(fpc, "%lf\t", &fPFAmpVectorsCoarse[i][j][m] ); | |
309 | } | |
310 | fscanf(fp, "\n" ); | |
311 | fscanf(fpc, "\n" ); | |
312 | for(int m = 0; m < n ; m++ ) | |
313 | { | |
314 | fscanf(fp, "%lf\t", &fPFTofVectors[i][j][m] ); | |
315 | fscanf(fpc, "%lf\t", &fPFTofVectorsCoarse[i][j][m] ); | |
316 | } | |
317 | ||
318 | fPeakFinderVectors->SetVector( i, j, fPFAmpVectors[i][j], fPFTofVectors[i][j], | |
319 | fPFAmpVectorsCoarse[i][j], fPFTofVectorsCoarse[i][j] ); | |
320 | ||
321 | } | |
322 | ||
323 | if(fp) fclose (fp ); | |
324 | if(fpc)fclose (fpc); | |
325 | ||
326 | } | |
327 | } | |
328 | } | |
329 | ||
330 | ||
331 | void | |
332 | AliCaloRawAnalyzerPeakFinder::WriteRootFile() const | |
333 | { | |
334 | // Utility function to write Peak-Finder vectors to an root file | |
335 | // The output is used to create an OCDB entry. | |
336 | fPeakFinderVectors->PrintVectors(); | |
337 | TFile *f = new TFile("peakfindervectors2.root", "recreate" ); | |
338 | fPeakFinderVectors->Write(); | |
339 | f->Close(); | |
340 | delete f; | |
341 | } | |
342 | ||
343 | ||
344 | void | |
345 | AliCaloRawAnalyzerPeakFinder::PrintVectors() | |
346 | { | |
347 | for(int i=0; i < 20; i++) | |
348 | { | |
349 | for( int j = 0; j < PF::MAXSTART; j ++ ) | |
350 | { | |
351 | for( int k=0; k < PF::SAMPLERANGE; k++ ) | |
352 | { | |
353 | cout << fPFAmpVectors[j][k][i] << "\t" ; | |
354 | } | |
355 | } | |
356 | cout << endl; | |
357 | } | |
358 | cout << __FILE__ << ":" << __LINE__ << ":.... DONE !!" << endl; | |
359 | } |