1 #ifndef ALIANALYSISALIEN_H
2 #define ALIANALYSISALIEN_H
3 /* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
4 * See cxx source for full Copyright notice */
6 // Author: Mihaela Gheata, 01/09/2008
8 //==============================================================================
9 // AliAnalysisAlien - AliEn utility class. Provides interface for creating
10 // a personalized JDL, finding and creating a dataset.
11 //==============================================================================
13 #ifndef ALIANALYSISGRID_H
14 #include "AliAnalysisGrid.h"
29 class AliAnalysisManager;
30 class AliAnalysisTaskCfg;
33 class AliAnalysisAlien : public AliAnalysisGrid {
38 AliAnalysisAlien(const char *name);
39 virtual ~AliAnalysisAlien();
40 AliAnalysisAlien(const AliAnalysisAlien& other);
41 AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
43 virtual void AddIncludePath(const char *path);
44 virtual void AddRunNumber(Int_t run);
45 virtual void AddRunNumber(const char *run);
46 virtual void AddRunList(const char *runList);
47 virtual void AddDataFile(const char *lfn);
48 virtual void AddExternalPackage(const char *name);
49 virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;}
50 virtual void SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;}
51 virtual void SetArguments(const char *name="") {fArguments = name;}
52 virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;}
53 virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
54 virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
55 virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
56 virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;}
57 virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;}
58 virtual void SetPrice(Int_t price=1) {fPrice = price;}
59 virtual void SetRunRange(Int_t min, Int_t max) {fRunRange[0] = min; fRunRange[1] = max;}
60 virtual void SetJobTag(const char *tag="") {fJobTag = tag;}
61 virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;}
62 virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;}
63 virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;}
64 virtual void SetSplitMode(const char *type="se") {fSplitMode = type;}
65 virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;}
66 virtual void SetAPIVersion(const char *version) {fAPIVersion = version;}
67 virtual void SetROOTVersion(const char *version) {fROOTVersion = version;}
68 virtual void SetAliROOTVersion(const char *version) {fAliROOTVersion=version;}
69 virtual void SetUser(const char *user) {fUser = user;}
70 virtual void SetTTL(Int_t ttl=30000) {fTTL = ttl;}
71 virtual void SetGridWorkingDir(const char *name="workdir") {fGridWorkingDir = name;}
72 virtual void SetGridDataDir(const char *name) {fGridDataDir = name;}
73 virtual void SetDataPattern(const char *pattern="*AliESDs.root") {fDataPattern = pattern;}
74 virtual void SetFriendChainName(const char *name="") {fFriendChainName = name;}
75 virtual void SetDefaultOutputs(Bool_t flag);
76 virtual void SetGridOutputDir(const char *name="output") {fGridOutputDir = name;}
77 virtual void SetOutputArchive(const char *list="log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2");
78 virtual void SetOutputFiles(const char *list);
79 virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;}
80 virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;}
81 virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;}
82 virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;}
83 virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list;};
84 virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;}
85 virtual void SetMergeDirName(const char *name) {fMergeDirName = name;}
86 virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;}
87 virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;}
88 virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);}
89 virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;}
90 virtual void SetPreferedSE(const char *se);
91 virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;}
92 virtual void SetRunPrefix(const char *prefix);
93 virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
94 virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;}
95 virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;}
97 TGridJDL *GetGridJDL() const {return fGridJDL;}
98 TGridJDL *GetMergingJDL() const {return fMergingJDL;}
99 const char *GetGridOutputDir() const {return fGridOutputDir;}
101 void AddModule(AliAnalysisTaskCfg *module);
102 void AddModules(TObjArray *list);
103 AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename="");
104 Int_t GetNmodules() const;
105 AliAnalysisTaskCfg *GetModule(const char *name);
106 Bool_t LoadModules();
107 Bool_t GenerateTest(const char *modname="");
108 Bool_t CheckFileCopy(const char *alienpath);
109 virtual Bool_t CreateDataset(const char *pattern);
110 virtual Bool_t CreateJDL();
111 virtual void EnablePackage(const char *package);
112 static Bool_t DirectoryExists(const char *lfn);
113 static Bool_t FileExists(const char *lfn);
114 static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
115 const char *GetListOfFiles(const char *type);
116 Bool_t CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl="");
117 static AliAnalysisManager *LoadAnalysisManager(const char *fname);
118 static Bool_t MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0);
119 virtual Bool_t MergeOutputs();
120 virtual void Print(Option_t *option="") const;
121 virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
122 static Bool_t SetupPar(const char *package);
123 virtual Bool_t Submit();
124 virtual Bool_t SubmitMerging();
125 static Int_t SubmitSingleJob(const char *query);
126 virtual void WriteAnalysisFile();
127 virtual void WriteAnalysisMacro();
128 virtual void WriteMergingMacro();
129 virtual void WriteMergeExecutable();
130 virtual void WriteExecutable();
131 virtual Bool_t WriteJDL(Bool_t copy);
132 virtual void WriteProductionFile(const char *filename) const;
133 virtual void WriteValidationScript(Bool_t merge=kFALSE);
136 virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;}
137 virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;}
138 virtual const char *GetProofDataSet() const {return fProofDataSet.Data();}
139 virtual void SetProofParameter(const char *pname, const char *value);
140 const char *GetProofParameter(const char *pname) const;
141 virtual void SetProofReset(Int_t mode) {fProofReset = mode;}
142 virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;}
143 virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;}
144 virtual void SetRootVersionForProof(const char *version) {fRootVersionForProof = version;}
145 virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;}
146 // .txt file containing the list of files to be chained in test mode
147 virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;}
148 virtual TChain *GetChainForTestMode(const char *treeName) const;
152 Bool_t CheckInputData();
153 void CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags);
154 virtual Bool_t Connect();
155 virtual void SetDefaults();
158 Bool_t IsCollection(const char *lfn) const;
159 virtual Bool_t IsSingleOutput() const;
160 Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
161 Bool_t LoadModule(AliAnalysisTaskCfg *mod);
162 Bool_t CheckDependencies();
165 TGridJDL *fGridJDL; //! JDL maker
166 TGridJDL *fMergingJDL; //! JDL maker
167 Int_t fPrice; // Grid price for the job;
168 Int_t fTTL; // Time to live.
169 Int_t fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob
170 Int_t fMaxInitFailed; // Maximum initial consecutive subjobs accepted to fail
171 Int_t fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio
172 Int_t fNtestFiles; // Number of files used in the testing case
173 Int_t fRunRange[2]; // Run range
174 Int_t fNrunsPerMaster; // Number of runs per masterjob
175 Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk
176 Int_t fMaxMergeStages; // Maximum number of merging stages
177 Int_t fNsubmitted; // Number of jobs submitted
178 Int_t fProductionMode; // Production mode (0-off, 1-on)
179 Int_t fOutputToRunNo; // Use run number as output directory
180 Int_t fMergeViaJDL; // Enable merging via automatic JDL
181 Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access
182 Int_t fOverwriteMode; // Overwrite existing files if any
183 Int_t fNreplicas; // Number of replicas for the output files
184 Int_t fNproofWorkers; // Number of workers in proof mode
185 Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
186 Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard
187 TString fRunNumbers; // List of runs to be processed
188 TString fExecutable; // Executable script for AliEn job
189 TString fExecutableCommand; // Command(s) to be executed in the executable script
190 TString fArguments; // Arguments for the executable script
191 TString fExecutableArgs; // arguments added to the executable script after the analysis macro
192 TString fAnalysisMacro; // Root macro steering the analysis
193 TString fAnalysisSource; // User analysis implementation (.cxx) file(s)
194 TString fValidationScript; // Name of the validation script
195 TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
196 TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
197 TString fSplitMode; // Job split mode
198 TString fAPIVersion; // API version
199 TString fROOTVersion; // ROOT version
200 TString fAliROOTVersion; // AliROOT version
201 TString fExternalPackages; // External packages
202 TString fUser; // AliEn user name
203 TString fGridWorkingDir; // AliEn directory containing the input packages
204 TString fGridDataDir; // AliEn data production directory
205 TString fDataPattern; // Data pattern for 'find' command
206 TString fGridOutputDir; // AliEn directory (wrt work dir) where the output should be written
207 TString fOutputArchive; // List of output archives separated by blancs
208 TString fOutputFiles; // List of output files separated by blancs
209 TString fInputFormat; // Input format (xml-single)
210 TString fDatasetName; // Dataset xml file to be created
211 TString fJDLName; // JDL file to be generated
212 TString fTerminateFiles; // List of output files produced during Terminate
213 TString fMergeExcludes; // List of output files excluded from merging
214 TString fIncludePath; // Include path
215 TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment.
216 TString fFriendChainName; // File name to construct friend chain (for AOD)
217 TString fJobTag; // Job tag
218 TString fOutputSingle; // Directory name for the output when split is per file
219 TString fRunPrefix; // Run prefix to be applied to run numbers
220 TString fProofCluster; // Proof cluster name
221 TString fProofDataSet; // Proof dataset to be used
222 TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
223 TString fRootVersionForProof; // ROOT version to be used in PROOF mode. The default one taken if empty.
224 TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster
225 TString fMergeDirName; // Name of the directory that should be added to the output directory
226 TObjArray *fInputFiles; // List of input files to be processed by the job
227 TObjArray *fPackages; // List of packages to be used
228 TObjArray *fModules; // List of AliAnalysisTaskCfg modules
229 TMap fProofParam; // Key-value pairs for proof mode
231 ClassDef(AliAnalysisAlien, 19) // Class providing some AliEn utilities