3 void AddAnalysisTasks();
4 class AliAnalysisAlien;
5 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode);
7 Int_t runNumbers[5] = {117222};
10 Bool_t doQAsym = 1; // output ok
11 Bool_t doVZERO = 1; // output ok but there is a 2nd file
12 Bool_t doVertex = 1; // output ok
13 Bool_t doSPD = 1; // output ok, needs RP
14 Bool_t doFMD = 1; // output ok
15 Bool_t doTPC = 1; // output ok
16 Bool_t doEventStat = 0; // output ok
17 Bool_t doSDD = 1; // outout ok needs RP
18 Bool_t doSSDdEdx = 1; // testing
20 Bool_t doTRD = 1; // TRD
21 Bool_t doITS = 1; // ITS
22 Bool_t doCALO = 1; // Calorimeter
23 Bool_t doMUONTrig = 1; // MUON trigger
24 Bool_t doImpParRes = 1; // Impact parameter resolution
25 Bool_t doMUON = 1; // MUON QA
27 Bool_t doMUONEff = 0; // MUON efficiency NEEDS geometry
28 Bool_t doV0 = 0; // V0 recosntruction performance NEEDS MCtruth
30 TString train_name = "QA";
31 //TString train_name = "TR019_PASS6";
32 TString job_tag = "QA16sim_LHC10d: PWG1 QA train";
33 //TString job_tag = "TR019: LHC09d-Pass6 ESD filtering w. PhysSelection -> AOD (including muon deltas)";
34 TString root_version = "v5-26-00b-6";
35 TString aliroot_version = "v4-20-01-AN";
36 TString grid_datadir = " /alice/sim/LHC10c9";
37 //TString grid_datadir = "/alice/data/2009/LHC09d";
38 //TString data_pattern = "*ESDs/pass2/*ESDs.root";
39 TString data_pattern = "*ESDs.root";
40 TString alien_outdir = "";
41 //TString alien_outdir = "/alice/cern.ch/user/m/mgheata/analysisDATA/output_QA007_PASS1_7TeV/000114917";
42 //TString alien_outdir = "/alice/data/2009/LHC09d/analysis/PASS6/AOD";
43 TString mergeExcludes;
45 Bool_t useProductionMode = kTRUE;
46 Bool_t useMergeViaJDL = kTRUE;
47 Bool_t useFastReadOption = kTRUE;
48 Bool_t useOverwriteMode = kTRUE;
49 Bool_t useDevelopmentVersion = kFALSE;
51 void PilotAnalysis(const char *plugin_mode = "full")
53 TGrid::Connect("alien://");
54 if (!gGrid || !gGrid->IsConnected()) {
55 ::Error("PilotAnalysis", "No grid connection");
58 // Write configuration
59 TString cdir = gSystem->WorkingDirectory();
60 gSystem->MakeDirectory(train_name);
61 gSystem->ChangeDirectory(train_name);
63 out.open(Form("%sConfig.C",train_name.Data()), ios::out);
65 out << " train_name = " << "\"" << train_name.Data() << "\";" << endl;
66 out << " root_version = " << "\"" << root_version.Data() << "\";" << endl;
67 out << " aliroot_version = " << "\"" << aliroot_version.Data() << "\";" << endl;
68 out << " grid_datadir = " << "\"" << grid_datadir.Data() << "\";" << endl;
69 if (!alien_outdir.Length()) alien_outdir = Form("output_%s",train_name.Data());
70 out << " alien_outdir = " << "\"" << alien_outdir.Data() << "\";" << endl;
71 out << " doAOD = " << doAOD << ";" << endl;
72 out << " doQAsim = " << doQAsym << ";" << endl;
73 out << " doVZERO = " << doVZERO << ";" << endl;
74 out << " doVertex = " << doVertex << ";" << endl;
75 out << " doSPD = " << doSPD << ";" << endl;
76 out << " doSDD = " << doSDD << ";" << endl;
77 out << " doSSDdEdx = " << doSSDdEdx << ";" << endl;
78 out << " doFMD = " << doFMD << ";" << endl;
79 out << " doTPC = " << doTPC << ";" << endl;
80 out << " doTRD = " << doTRD << ";" << endl;
81 out << " doImpParRes = " << doImpParRes << ";" << endl;
82 out << " doMUON = " << doMUON << ";" << endl;
83 out << " doEventStat = " << doEventStat << ";" << endl;
88 gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
91 AliAnalysisManager *mgr = new AliAnalysisManager("PilotAnalysis", "Production train");
92 mgr->SetNSysInfo(100);
94 AliESDInputHandlerRP *esdHandler = new AliESDInputHandlerRP();
95 esdHandler->SetReadFriends(kTRUE);
96 esdHandler->SetActiveBranches("ESDfriend");
97 mgr->SetInputEventHandler(esdHandler);
100 AliAODHandler* aodHandler = new AliAODHandler();
101 aodHandler->SetOutputFileName("AliAOD.root");
102 if (!mergeExcludes.IsNull()) mergeExcludes += " ";
103 mergeExcludes += "AliAOD.root";
104 mgr->SetOutputEventHandler(aodHandler);
107 mgr->SetDebugLevel(0);
108 mgr->SetSaveCanvases(kTRUE);
113 AliAnalysisAlien *alienHandler = CreateAlienHandler(plugin_mode);
114 mgr->SetGridHandler(alienHandler);
115 if (mgr->InitAnalysis()) {
117 mgr->StartAnalysis("grid");
118 TString alien_workdir = gGrid->GetHomeDirectory();
119 alien_workdir += "analysisDATA";
120 TString configName = Form("%s/%sConfig.C", alien_workdir.Data(), train_name.Data());
121 if (strcmp(plugin_mode, "test")) {
122 printf("=== Registering configuration file <%s>===\n", configName.Data());
123 if (AliAnalysisAlien::FileExists(configName.Data())) gGrid->Rm(configName.Data());
124 TFile::Cp(Form("file:%sConfig.C",train_name.Data()), Form("alien://%s", configName.Data()));
131 gSystem->Load("libANALYSIS");
132 gSystem->Load("libANALYSISalice");
133 gSystem->Load("libCORRFW");
134 gSystem->Load("libTENDER");
135 gSystem->Load("libPWG0base.so");
136 gSystem->Load("libPWG0dep.so");
137 gSystem->Load("libPWG0selectors.so");
138 gSystem->Load("libPWG1.so");
139 gSystem->Load("libPWG2.so");
140 gSystem->Load("libPWG2forward.so");
143 gSystem->Load("libEMCALUtils");
144 gSystem->Load("libPWG4PartCorrBase");
145 gSystem->Load("libPWG4PartCorrDep");
147 if(doMUONTrig || doAOD) {
148 gSystem->Load("libPWG3base");
149 gSystem->Load("libPWG3muon");
150 gSystem->Load("libPWG3muondep");
154 void AddAnalysisTasks()
156 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
157 mgr->SetCommonFileName("QAresults.root");
158 // AOD creation with collision events
160 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskESDFilter.C");
161 mgr->RegisterExtraFile("AliAOD.Muons.root");
162 mgr->RegisterExtraFile("AliAOD.Dimuons.root");
163 AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kFALSE, kTRUE, kTRUE, doEventStat);
166 // Event Statistics (Jan Fiete)
170 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
171 AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();
172 // if (doMUON) physSelTask->GetPhysicsSelection()->SetUseMuonTriggers();
173 mgr->RegisterExtraFile("event_stat.root");
175 // Vertexing (A. Dainese)
178 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskVertexESD.C");
179 AliAnalysisTaskVertexESD* taskvertexesd = AddTaskVertexESD();
180 taskvertexesd->SelectCollisionCandidates();
183 // TPC QA (E. Sicking)
186 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
187 AliAnalysisTaskSE * taskqasim = AddTaskQAsym(0);
188 taskqasim->SelectCollisionCandidates();
191 // VZERO QA (C. Cheshkov)
194 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskVZEROQA.C");
195 AliAnalysisTaskSE * taskv0qa = AddTaskVZEROQA(0);
196 // taskv0qa->SelectCollisionCandidates();
199 // TPC (Jacek Otwinowski)
202 gROOT->LoadMacro("$(ALICE_ROOT)/PWG1/TPC/macros/AddTaskPerformanceTPCQA.C");
203 AliPerformanceTask *tpcQA = AddTaskPerformanceTPCQA(kFALSE, kTRUE);
206 // SPD (A. Mastroserio)
209 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskSPDQA.C");
210 AliAnalysisTaskSE* taskspdqa = AddTaskSPDQA();
211 taskspdqa->SelectCollisionCandidates();
217 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddSDDPoints.C");
218 AliAnalysisTaskSE* tasksdd = AddSDDPoints();
219 tasksdd->SelectCollisionCandidates();
222 // SSD dEdx (Marek Chojnacki)
225 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskdEdxSSDQA.C");
226 AliAnalysisTaskSE* taskssddedx = AddTaskdEdxSSDQA();
227 taskssddedx->SelectCollisionCandidates();
234 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskPerformanceITS.C");
235 AliAnalysisTaskITSTrackingCheck *itsQA = AddTaskPerformanceITS(kFALSE);
238 // TRD (Alex Bercuci, M. Fasel)
241 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTrainPerformanceTRD.C");
242 AddTrainPerformanceTRD("ALL");
246 // Calorimetry (Gustavo Conesa)
250 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
251 AliAnalysisTaskParticleCorrelation *taskCaloQA = AddTaskCalorimeterQA("ESD", kTRUE, kFALSE);
252 taskCaloQA->SetDebugLevel(0);
260 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskMTRchamberEfficiency.C");
261 AliAnalysisTaskTrigChEff *taskMuonTrig = AddTaskMTRchamberEfficiency();
269 gROOT->LoadMacro("$ALICE_ROOT/PWG3/muondep/AddTaskMUONTrackingEfficiency.C");
270 AliAnalysisTaskMuonTrackingEff *taskMuonTrackEff = AddTaskMUONTrackingEfficiency();
274 // V0-Decay Reconstruction (Ana Marin)
278 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskV0QA.C");
279 AliAnalysisTaskV0QA *taskv0QA = AddTaskV0QA(kFALSE);
281 // FMD (Hans Hjersing Dalsgaard)
284 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskFMD.C");
285 AliAnalysisTaskSE* taskfmd = AddTaskFMD();
286 taskfmd->SelectCollisionCandidates();
288 // Impact parameter resolution (xianbao.yuan@pd.infn.it, andrea.dainese@pd.infn.it)
291 gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskImpParRes.C");
292 AliAnalysisTaskSE* taskimpparres= AddTaskImpParRes();
293 taskimpparres->SelectCollisionCandidates();
295 // MUON QA (Philippe Pillot)
298 gROOT->LoadMacro("$ALICE_ROOT/PWG3/muon/AddTaskMuonQA.C");
299 AliAnalysisTaskSE* taskmuonqa= AddTaskMuonQA(kFALSE, kFALSE);
303 //______________________________________________________________________________
304 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
306 // Check if user has a valid token, otherwise make one. This has limitations.
307 // One can always follow the standard procedure of calling alien-token-init then
308 // source /tmp/gclient_env_$UID in the current shell.
309 if (!AliAnalysisGrid::CreateToken()) return NULL;
310 AliAnalysisAlien *plugin = new AliAnalysisAlien();
311 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
312 plugin->SetRunMode(plugin_mode);
313 if (useProductionMode) plugin->SetProductionMode();
314 plugin->SetJobTag(job_tag);
315 plugin->SetNtestFiles(1);
316 // Set versions of used packages
317 plugin->SetAPIVersion("V1.1x");
318 plugin->SetROOTVersion(root_version);
319 plugin->SetAliROOTVersion(aliroot_version);
320 // Declare input data to be processed.
321 // Method 1: Create automatically XML collections using alien 'find' command.
322 // Define production directory LFN
323 plugin->SetGridDataDir(grid_datadir);
324 // Set data search pattern
325 plugin->SetDataPattern(data_pattern);
326 // ...then add run numbers to be considered
327 // if (!iAODanalysis) plugin->SetRunRange(run_range[0], run_range[1]);
328 //plugin->SetRunPrefix("000");
329 // plugin->SetOutputSingleFolder("output");
330 plugin->SetOutputToRunNo();
331 // Int_t run_numbers[30] = {104065, 104155, 104157, 104159, 104160, 104315, 104316, 104320, 104321, 104439,
332 // 104792, 104793, 104799, 104800, 104801, 104802, 104803, 104821, 104824, 104825,
333 // 104841, 104845, 104849, 104852, 104865, 104867, 104876, 104892, 105143, 105160};
334 // Int_t run_numbers[8] = {114785, 114778, 114757, 114753, 114745, 114744, 114743, 114737};
335 // Int_t run_numbers[2] = {114785, 114917};
336 for (Int_t i=0; i<2; i++) {
337 if (!runNumbers[i]) break;
338 plugin->AddRunNumber(runNumbers[i]);
340 // Define alien work directory where all files will be copied. Relative to alien $HOME.
341 plugin->SetGridWorkingDir(train_name);
342 // Declare alien output directory. Relative to working directory.
343 if (alien_outdir.IsNull()) alien_outdir = Form("output_%s",train_name.Data());
344 plugin->SetGridOutputDir(alien_outdir);
346 if (useDevelopmentVersion) {
347 plugin->EnablePackage("STEERBase");
348 plugin->EnablePackage("ESD");
349 plugin->EnablePackage("AOD");
350 plugin->EnablePackage("ANALYSIS");
351 plugin->EnablePackage("ANALYSISalice");
354 // Declare the analysis source files names separated by blancs. To be compiled runtime
355 // using ACLiC on the worker nodes.
356 // Declare all libraries (other than the default ones for the framework. These will be
357 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
358 plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
360 plugin->SetAdditionalLibs("libTENDER.so libPWG0base.so libPWG0dep.so libPWG0selectors.so libPWG1.so libPWG2.so \
361 libPWG2forward.so libEMCALUtils.so libPWG4PartCorrBase.so libPWG4PartCorrDep.so \
362 libPWG3base.so libPWG3muon.so libPWG3muondep.so");
364 // Declare the output file names separated by blancs.
365 // (can be like: file.root or file.root@ALICE::Niham::File)
366 plugin->SetDefaultOutputs();
367 // plugin->SetMergeExcludes(mergeExclude);
368 plugin->SetMaxMergeFiles(20);
369 plugin->SetNrunsPerMaster(1);
370 // Optionally define the files to be archived.
371 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
373 // Put default output files to archive
374 TString listhists = "";
375 TString listaods = "";
376 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
377 TIter next(mgr->GetOutputs());
378 AliAnalysisDataContainer *output;
379 while ((output=(AliAnalysisDataContainer*)next())) {
380 const char *filename = output->GetFileName();
381 if (!(strcmp(filename, "default"))) {
382 if (!mgr->GetOutputEventHandler()) continue;
383 filename = mgr->GetOutputEventHandler()->GetOutputFileName();
384 if (listaods.Length()) listaods += ",";
385 listaods += filename;
387 if (listhists.Contains(filename)) continue;
388 if (listhists.Length()) listhists += ",";
389 listhists += filename;
392 if (mgr->GetExtraFiles().Length()) {
393 if (listhists.Length()) listhists += ",";
394 listhists += mgr->GetExtraFiles();
395 listhists.ReplaceAll(" ", ",");
397 if (listhists.Length()) listhists = Form("hist_archive.zip:%s", listhists.Data());
398 if (listaods.Length()) listaods = Form("aod_archive.zip:%s", listaods.Data());
399 if (!listhists.Length()) {
400 ::Fatal("AnalysisTrainNew", "No task output !");
402 TString outputArchive = "log_archive.zip:stdout,stderr@disk=4";
403 if (listaods.Length()) {
404 outputArchive += " ";
405 outputArchive += listaods;
406 outputArchive += "@disk=4";
408 if (listhists.Length()) {
409 outputArchive += " ";
410 outputArchive += listhists;
411 outputArchive += "@disk=4";
413 if (!mergeExcludes.IsNull()) plugin->SetMergeExcludes(mergeExcludes);
415 // if (iAODanalysis && iPWG3d2h)
416 // plugin->SetFriendChainName("AliAOD.VertexingHF.root");
417 // plugin->SetOutputArchive(outputArchive);
418 // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
419 plugin->SetAnalysisMacro(Form("%s.C", train_name.Data()));
420 // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
421 plugin->SetSplitMaxInputFileNumber(10);
422 // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
423 // plugin->SetMaxInitFailed(5);
424 // Optionally resubmit threshold.
425 // plugin->SetMasterResubmitThreshold(90);
426 // Optionally set time to live (default 30000 sec)
427 plugin->SetTTL(70000);
428 // Optionally set input format (default xml-single)
429 plugin->SetInputFormat("xml-single");
430 // Optionally modify the name of the generated JDL (default analysis.jdl)
431 plugin->SetJDLName(Form("%s.jdl", train_name.Data()));
432 // Optionally modify the executable name (default analysis.sh)
433 plugin->SetExecutable(Form("%s.sh", train_name.Data()));
434 // Optionally modify job price (default 1)
436 // Optionally modify split mode (default 'se')
437 plugin->SetSplitMode("se");
438 plugin->SetExecutableCommand("aliroot -b -q");
440 plugin->SetMergeViaJDL(useMergeViaJDL);
441 // Use fastread option
442 plugin->SetFastReadOption(useFastReadOption);
444 plugin->SetOverwriteMode(useOverwriteMode);