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Updates for QA and D0 analysis (ChiaraB)
[u/mrichter/AliRoot.git] / PWG3 / vertexingHF / AliAnalysisTaskSED0Mass.cxx
1 /**************************************************************************
2  * Copyright(c) 1998-2009, ALICE Experiment at CERN, All rights reserved. *
3  *                                                                        *
4  * Author: The ALICE Off-line Project.                                    *
5  * Contributors are mentioned in the code where appropriate.              *
6  *                                                                        *
7  * Permission to use, copy, modify and distribute this software and its   *
8  * documentation strictly for non-commercial purposes is hereby granted   *
9  * without fee, provided that the above copyright notice appears in all   *
10  * copies and that both the copyright notice and this permission notice   *
11  * appear in the supporting documentation. The authors make no claims     *
12  * about the suitability of this software for any purpose. It is          *
13  * provided "as is" without express or implied warranty.                  *
14  **************************************************************************/
15
16 /////////////////////////////////////////////////////////////
17 //
18 // AliAnalysisTaskSE for D0 candidates invariant mass histogram
19 // and comparison with the MC truth and cut variables distributions.
20 //
21 // Authors: A.Dainese, andrea.dainese@lnl.infn.it
22 // Chiara Bianchin, chiara.bianchin@pd.infn.it (invariant mass)
23 // Carmelo Di Giglio, carmelo.digiglio@ba.infn.it (like sign)
24 /////////////////////////////////////////////////////////////
25
26 #include <Riostream.h>
27 #include <TClonesArray.h>
28 #include <TCanvas.h>
29 #include <TNtuple.h>
30 #include <TList.h>
31 #include <TH1F.h>
32 #include <TH2F.h>
33 #include <TDatabasePDG.h>
34
35 #include <AliAnalysisDataSlot.h>
36 #include <AliAnalysisDataContainer.h>
37 #include "AliAnalysisManager.h"
38 #include "AliESDtrack.h"
39 #include "AliVertexerTracks.h"
40 #include "AliAODHandler.h"
41 #include "AliAODEvent.h"
42 #include "AliAODVertex.h"
43 #include "AliAODTrack.h"
44 #include "AliAODMCHeader.h"
45 #include "AliAODMCParticle.h"
46 #include "AliAODRecoDecayHF2Prong.h"
47 #include "AliAODRecoCascadeHF.h"
48 #include "AliAnalysisVertexingHF.h"
49 #include "AliAnalysisTaskSE.h"
50 #include "AliAnalysisTaskSED0Mass.h"
51 #include "AliNormalizationCounter.h"
52
53 ClassImp(AliAnalysisTaskSED0Mass)
54
55
56 //________________________________________________________________________
57 AliAnalysisTaskSED0Mass::AliAnalysisTaskSED0Mass():
58 AliAnalysisTaskSE(),
59 fOutputMass(0),
60 fDistr(0),
61 fNentries(0), 
62 fCuts(0),
63 fArray(0),
64 fReadMC(0),
65 fCutOnDistr(0),
66 fUsePid4Distr(0),
67 fCounter(0),
68 fNPtBins(1),
69 fLsNormalization(1.),
70 fFillOnlyD0D0bar(0)
71
72
73 {
74   // Default constructor
75 }
76
77 //________________________________________________________________________
78 AliAnalysisTaskSED0Mass::AliAnalysisTaskSED0Mass(const char *name,AliRDHFCutsD0toKpi* cuts):
79 AliAnalysisTaskSE(name),
80 fOutputMass(0), 
81 fDistr(0),
82 fNentries(0),
83 fCuts(0),
84 fArray(0),
85 fReadMC(0),
86 fCutOnDistr(0),
87 fUsePid4Distr(0),
88 fCounter(0),
89 fNPtBins(1),
90 fLsNormalization(1.),
91 fFillOnlyD0D0bar(0)
92
93 {
94   // Default constructor
95
96   fNPtBins=cuts->GetNPtBins();
97   // fTotPosPairs=new Int_t[fNPtBins];
98   // fTotNegPairs=new Int_t[fNPtBins];
99   // for(Int_t i=0;i<fNPtBins;i++) {fTotPosPairs[i]=0; fTotNegPairs[i]=0;}
100     
101   fCuts=cuts;
102
103   // Output slot #1 writes into a TList container (mass with cuts)
104   DefineOutput(1,TList::Class());  //My private output
105   // Output slot #2 writes into a TList container (distributions)
106   DefineOutput(2,TList::Class());  //My private output
107   // Output slot #3 writes into a TH1F container (number of events)
108   DefineOutput(3,TH1F::Class());  //My private output
109   // Output slot #4 writes into a TList container (cuts)
110   DefineOutput(4,AliRDHFCutsD0toKpi::Class());  //My private output
111   // Output slot #5 writes Normalization Counter 
112   DefineOutput(5,AliNormalizationCounter::Class());
113 }
114
115 //________________________________________________________________________
116 AliAnalysisTaskSED0Mass::~AliAnalysisTaskSED0Mass()
117 {
118    if (fOutputMass) {
119     delete fOutputMass;
120     fOutputMass = 0;
121   }
122   if (fDistr) {
123     delete fDistr;
124     fDistr = 0;
125   }
126   if (fCuts) {
127     delete fCuts;
128     fCuts = 0;
129   }
130   if (fNentries){
131     delete fNentries;
132     fNentries = 0;
133   }
134   if(fCounter){
135     delete fCounter;
136     fCounter=0;
137   }
138  
139 }  
140
141 //________________________________________________________________________
142 void AliAnalysisTaskSED0Mass::Init()
143 {
144   // Initialization
145
146   if(fDebug > 1) printf("AnalysisTaskSED0Mass::Init() \n");
147
148   
149   AliRDHFCutsD0toKpi* copyfCuts=new AliRDHFCutsD0toKpi(*fCuts);
150   const char* nameoutput=GetOutputSlot(4)->GetContainer()->GetName();
151   copyfCuts->SetName(nameoutput);
152   // Post the data
153   PostData(4,copyfCuts);
154
155
156   return;
157 }
158
159 //________________________________________________________________________
160 void AliAnalysisTaskSED0Mass::UserCreateOutputObjects()
161 {
162
163   // Create the output container
164   //
165   if(fDebug > 1) printf("AnalysisTaskSED0Mass::UserCreateOutputObjects() \n");
166
167   // Several histograms are more conveniently managed in a TList
168   fOutputMass = new TList();
169   fOutputMass->SetOwner();
170   fOutputMass->SetName("listMass");
171
172   fDistr = new TList();
173   fDistr->SetOwner();
174   fDistr->SetName("distributionslist");
175
176   TString nameMass=" ",nameSgn27=" ",nameSgn=" ", nameBkg=" ", nameRfl=" ",nameMassNocutsS =" ",nameMassNocutsB =" ", namedistr=" ";
177
178   for(Int_t i=0;i<fCuts->GetNPtBins();i++){
179
180     nameMass="histMass_";
181     nameMass+=i;
182     nameSgn27="histSgn27_";
183     nameSgn27+=i;
184     nameSgn="histSgn_";
185     nameSgn+=i;
186     nameBkg="histBkg_";
187     nameBkg+=i;
188     nameRfl="histRfl_";
189     nameRfl+=i;
190     nameMassNocutsS="hMassS_";
191     nameMassNocutsS+=i;
192     nameMassNocutsB="hMassB_";
193     nameMassNocutsB+=i;
194
195     //histograms of cut variable distributions
196
197     //  pT
198     namedistr="hptpiS_";
199     namedistr+=i;
200     TH1F *hptpiS = new TH1F(namedistr.Data(), "P_{T} distribution (pions);p_{T} [GeV/c]",200,0.,8.);
201
202     namedistr="hptKS_";
203     namedistr+=i;
204     TH1F *hptKS = new TH1F(namedistr.Data(), "P_{T} distribution (kaons);p_{T} [GeV/c]",200,0.,8.);
205
206     namedistr="hptB_";
207     namedistr+=i;
208     TH1F *hptB = new TH1F(namedistr.Data(), "P_{T} distribution;p_{T} [GeV/c]",200,0.,8.);
209
210     //  pT no mass cut
211     // namedistr="hptpiSnoMcut_";
212     // namedistr+=i;
213     // TH1F *hptpiSnoMcut = new TH1F(namedistr.Data(), "P_{T} distribution (pions);p_{T} [GeV/c]",200,0.,8.);
214
215     // namedistr="hptKSnoMcut_";
216     // namedistr+=i;
217     // TH1F *hptKSnoMcut = new TH1F(namedistr.Data(), "P_{T} distribution (kaons);p_{T} [GeV/c]",200,0.,8.);
218
219     // namedistr="hptB1prongnoMcut_";
220     // namedistr+=i;
221     // TH1F *hptB1pnoMcut = new TH1F(namedistr.Data(), "P_{T} distribution;p_{T} [GeV/c]",200,0.,8.);
222
223     // namedistr="hptB2prongsnoMcut_";
224     // namedistr+=i;
225     // TH1F *hptB2pnoMcut = new TH1F(namedistr.Data(), "P_{T} distribution;p_{T} [GeV/c]",200,0.,8.);
226     
227     // fDistr->Add(hptpiSnoMcut);
228     // fDistr->Add(hptKSnoMcut);
229     // fDistr->Add(hptB1pnoMcut);
230     // fDistr->Add(hptB2pnoMcut);
231
232
233     //  dca
234     namedistr="hdcaS_";
235     namedistr+=i;
236     TH1F *hdcaS = new TH1F(namedistr.Data(), "DCA distribution;dca [cm]",200,0.,0.1);
237     namedistr="hdcaB_";
238     namedistr+=i;
239     TH1F *hdcaB = new TH1F(namedistr.Data(), "DCA distribution;dca [cm]",200,0.,0.1);
240
241     //  costhetastar
242     namedistr="hcosthetastarS_";
243     namedistr+=i;
244     TH1F *hcosthetastarS = new TH1F(namedistr.Data(), "cos#theta* distribution;cos#theta*",200,-1.,1.);
245     namedistr="hcosthetastarB_";
246     namedistr+=i;
247     TH1F *hcosthetastarB = new TH1F(namedistr.Data(), "cos#theta* distribution;cos#theta*",200,-1.,1.);
248
249     // impact parameter
250     namedistr="hd0piS_";
251     namedistr+=i;
252     TH1F *hd0piS = new TH1F(namedistr.Data(), "Impact parameter distribution (pions);d0(#pi) [cm]",200,-0.1,0.1);
253
254     namedistr="hd0KS_";
255     namedistr+=i;
256     TH1F *hd0KS = new TH1F(namedistr.Data(), "Impact parameter distribution (kaons);d0(K) [cm]",200,-0.1,0.1);
257
258     namedistr="hd0B_";
259     namedistr+=i;
260     TH1F *hd0B = new TH1F(namedistr.Data(), "Impact parameter distribution (both);d0 [cm]",200,-0.1,0.1);
261
262     namedistr="hd0p0B_";
263     namedistr+=i;
264     TH1F *hd0p0B = new TH1F(namedistr.Data(), "Impact parameter distribution (prong +);d0 [cm]",200,-0.1,0.1);
265
266     namedistr="hd0p1B_";
267     namedistr+=i;
268     TH1F *hd0p1B = new TH1F(namedistr.Data(), "Impact parameter distribution (prong -);d0 [cm]",200,-0.1,0.1);
269
270     namedistr="hd0moresB_";
271     namedistr+=i;
272     TH1F *hd0moresB = new TH1F(namedistr.Data(), "Impact parameter distribution (both);d0 [cm]",200,-0.1,0.1);
273
274     namedistr="hd0d0moresB_";
275     namedistr+=i;
276     TH1F *hd0d0moresB = new TH1F(namedistr.Data(), "Impact parameter distribution (prong +);d0 [cm]",200,-0.001,0.001);
277
278     namedistr="hd0d0S_";
279     namedistr+=i;
280     TH1F *hd0d0S = new TH1F(namedistr.Data(), "d_{0}#timesd_{0} distribution;d_{0}#timesd_{0} [cm^{2}]",200,-0.001,0.001);
281     namedistr="hd0d0B_";
282     namedistr+=i;
283     TH1F *hd0d0B = new TH1F(namedistr.Data(), "d_{0}#timesd_{0} distribution;d_{0}#timesd_{0} [cm^{2}]",200,-0.001,0.001);
284
285     //decay lenght
286     namedistr="hdeclS_";
287     namedistr+=i;
288     TH1F *hdeclengthS = new TH1F(namedistr.Data(), "Decay Length distribution;Decay Length [cm]",200,0,0.15);
289
290     namedistr="hdeclB_";
291     namedistr+=i;
292     TH1F *hdeclengthB = new TH1F(namedistr.Data(), "Decay Length distribution;Decay Length [cm]",200,0,0.15);
293
294     namedistr="hnormdeclS_";
295     namedistr+=i;
296     TH1F *hnormdeclengthS = new TH1F(namedistr.Data(), "Normalized Decay Length distribution;Decay Length/Err ",200,0,6.);
297
298     namedistr="hnormdeclB_";
299     namedistr+=i;
300     TH1F *hnormdeclengthB = new TH1F(namedistr.Data(), "Normalized Decay Length distribution;Decay Length/Err ",200,0,6.);
301
302    //  costhetapoint
303     namedistr="hcosthetapointS_";
304     namedistr+=i;
305     TH1F *hcosthetapointS = new TH1F(namedistr.Data(), "cos#theta_{Point} distribution;cos#theta_{Point}",200,0,1.);
306     namedistr="hcosthetapointB_";
307     namedistr+=i;
308     TH1F *hcosthetapointB = new TH1F(namedistr.Data(), "cos#theta_{Point} distribution;cos#theta_{Point}",200,0,1.);
309
310     namedistr="hcosthetapointmoresB_";
311     namedistr+=i;
312     TH1F *hcosthetapointmoresB = new TH1F(namedistr.Data(), "cos#theta_{Point} distribution;cos#theta_{Point}",200,0,1.);
313
314    //  costhetapoint vs d0 or d0d0
315     namedistr="hcosthpointd0S_";
316     namedistr+=i;
317     TH2F *hcosthpointd0S= new TH2F(namedistr.Data(),"Correlation cos#theta_{Point}-d_{0};cos#theta_{Point};d_{0} [cm^{2}]",200,0,1.,200,-0.001,0.001);
318
319     namedistr="hcosthpointd0B_";
320     namedistr+=i;
321     TH2F *hcosthpointd0B= new TH2F(namedistr.Data(),"Correlation cos#theta_{Point}-d_{0};cos#theta_{Point};d_{0} [cm^{2}]",200,0,1.,200,-0.001,0.001);
322
323     namedistr="hcosthpointd0d0S_";
324     namedistr+=i;
325     TH2F *hcosthpointd0d0S= new TH2F(namedistr.Data(),"Correlation cos#theta_{Point}-d_{0}#timesd_{0};cos#theta_{Point};d_{0}#timesd_{0} [cm^{2}]",200,0,1.,200,-0.001,0.001);
326     namedistr="hcosthpointd0d0B_";
327     namedistr+=i;
328     TH2F *hcosthpointd0d0B= new TH2F(namedistr.Data(),"Correlation cos#theta_{Point}-d_{0}#timesd_{0};cos#theta_{Point};d_{0}#timesd_{0} [cm^{2}]",200,0,1.,200,-0.001,0.001);
329
330     fDistr->Add(hptpiS);
331     fDistr->Add(hptKS);
332     fDistr->Add(hptB);
333
334     fDistr->Add(hdcaS);
335     fDistr->Add(hdcaB);
336
337     fDistr->Add(hd0piS);
338     fDistr->Add(hd0KS);
339     fDistr->Add(hd0B);
340     fDistr->Add(hd0p0B);
341     fDistr->Add(hd0p1B);
342     fDistr->Add(hd0moresB);
343
344     fDistr->Add(hd0d0S);
345     fDistr->Add(hd0d0B);
346     fDistr->Add(hd0d0moresB);
347
348     fDistr->Add(hcosthetastarS);
349     fDistr->Add(hcosthetastarB);
350
351     fDistr->Add(hcosthetapointS);
352     fDistr->Add(hcosthetapointB);
353     fDistr->Add(hcosthetapointmoresB);
354
355     fDistr->Add(hdeclengthS);
356     fDistr->Add(hdeclengthB);
357
358     fDistr->Add(hnormdeclengthS);
359     fDistr->Add(hnormdeclengthB);
360
361     fDistr->Add(hcosthpointd0S);
362     fDistr->Add(hcosthpointd0B);
363
364     fDistr->Add(hcosthpointd0d0S);
365     fDistr->Add(hcosthpointd0d0B);
366
367     //histograms filled only when the secondary vertex is recalculated w/o the daughter tracks (as requested in the cut object)
368
369     if(fCuts->GetIsPrimaryWithoutDaughters()){
370       namedistr="hd0vmoresB_";
371       namedistr+=i;
372       TH1F *hd0vmoresB = new TH1F(namedistr.Data(), "Impact parameter distribution (both);d0 [cm]",200,-0.1,0.1);
373
374       namedistr="hd0d0vmoresB_";
375       namedistr+=i;
376       TH1F *hd0d0vmoresB = new TH1F(namedistr.Data(), "Impact parameter distribution (prong +);d0 [cm]",200,-0.001,0.001);
377
378
379       namedistr="hd0vpiS_";
380       namedistr+=i;
381       TH1F *hd0vpiS = new TH1F(namedistr.Data(), "Impact parameter distribution (pions)(vtx w/o these tracks);d0(#pi) [cm]",200,-0.1,0.1);
382
383       namedistr="hd0vKS_";
384       namedistr+=i;
385       TH1F *hd0vKS = new TH1F(namedistr.Data(), "Impact parameter distribution (kaons) (vtx w/o these tracks);d0(K) [cm]",200,-0.1,0.1);
386       namedistr="hd0vB_";
387       namedistr+=i;
388       TH1F *hd0vB = new TH1F(namedistr.Data(), "Impact parameter distribution (vtx w/o these tracks);d0 [cm]",200,-0.1,0.1);
389
390       namedistr="hd0vp0B_";
391       namedistr+=i;
392       TH1F *hd0vp0B = new TH1F(namedistr.Data(), "Impact parameter distribution (prong + ** vtx w/o these tracks);d0 [cm]",200,-0.1,0.1);
393
394       namedistr="hd0vp1B_";
395       namedistr+=i;
396       TH1F *hd0vp1B = new TH1F(namedistr.Data(), "Impact parameter distribution (prong - ** vtx w/o these tracks);d0 [cm]",200,-0.1,0.1);
397
398
399       namedistr="hd0d0vS_";
400       namedistr+=i;
401       TH1F *hd0d0vS = new TH1F(namedistr.Data(), "d_{0}#timesd_{0} distribution (vtx w/o these tracks);d_{0}#timesd_{0} [cm^{2}]",200,-0.001,0.001);
402       namedistr="hd0d0vB_";
403       namedistr+=i;
404       TH1F *hd0d0vB = new TH1F(namedistr.Data(), "d_{0}#timesd_{0} distribution (vtx w/o these tracks);d_{0}#timesd_{0} [cm^{2}]",200,-0.001,0.001);
405
406  
407       namedistr="hdeclvS_";
408       namedistr+=i;
409       TH1F *hdeclengthvS = new TH1F(namedistr.Data(), "Decay Length distribution (vtx w/o tracks);Decay Length [cm]",200,0,0.6);
410
411       namedistr="hdeclvB_";
412       namedistr+=i;
413       TH1F *hdeclengthvB = new TH1F(namedistr.Data(), "Decay Length distribution (vtx w/o tracks);Decay Length [cm]",200,0,0.6);
414
415       namedistr="hnormdeclvS_";
416       namedistr+=i;
417       TH1F *hnormdeclengthvS = new TH1F(namedistr.Data(), "Normalized Decay Length distribution (vtx w/o tracks);Decay Length/Err ",200,0,10.);
418
419       namedistr="hnormdeclvB_";
420       namedistr+=i;
421       TH1F *hnormdeclengthvB = new TH1F(namedistr.Data(), "Normalized Decay Length distribution (vtx w/o tracks);Decay Length/Err ",200,0,10.);
422
423  
424
425       fDistr->Add(hd0vpiS);
426       fDistr->Add(hd0vKS);
427       fDistr->Add(hd0vB);
428       fDistr->Add(hd0vp0B);
429       fDistr->Add(hd0vp1B);
430       fDistr->Add(hd0vmoresB);
431
432       fDistr->Add(hd0d0vS);
433       fDistr->Add(hd0d0vB);
434       fDistr->Add(hd0d0vmoresB);
435
436       fDistr->Add(hdeclengthvS);
437       fDistr->Add(hdeclengthvB);
438
439       fDistr->Add(hnormdeclengthvS);
440       fDistr->Add(hnormdeclengthvB);
441     }
442
443     //histograms of invariant mass distributions
444
445     TH1F* tmpMt = new TH1F(nameMass.Data(),"D^{0} invariant mass; M [GeV]; Entries",200,1.5648,2.1648);
446     TH1F *tmpMl=(TH1F*)tmpMt->Clone();
447     tmpMt->Sumw2();
448     tmpMl->Sumw2();
449
450     //to compare with AliAnalysisTaskCharmFraction
451     // TH1F* tmpS27t = new TH1F(nameSgn27.Data(),"D^{0} invariant mass in M(D^{0}) +/- 27 MeV - MC; M [GeV]; Entries",200,1.5648,2.1648);
452     // TH1F *tmpS27l=(TH1F*)tmpS27t->Clone();
453     // tmpS27t->Sumw2();
454     // tmpS27l->Sumw2();
455  
456     //distribution w/o cuts
457     //   TH1F* tmpMS = new TH1F(nameMassNocutsS.Data(),"D^{0} invariant mass; M [GeV]; Entries",300,0.7,3.);
458     TH1F* tmpMS = new TH1F(nameMassNocutsS.Data(),"D^{0} invariant mass; M [GeV]; Entries",300,1.5648,2.1648); //range (MD0-300MeV, mD0 + 300MeV)
459     TH1F *tmpMB=(TH1F*)tmpMS->Clone();
460     tmpMB->SetName(nameMassNocutsB.Data());
461     tmpMS->Sumw2();
462     tmpMB->Sumw2();
463
464     //MC signal and background
465     TH1F* tmpSt = new TH1F(nameSgn.Data(), "D^{0} invariant mass - MC; M [GeV]; Entries",200,1.5648,2.1648);
466     TH1F *tmpSl=(TH1F*)tmpSt->Clone();
467     tmpSt->Sumw2();
468     tmpSl->Sumw2();
469
470     TH1F* tmpBt = new TH1F(nameBkg.Data(), "Background invariant mass - MC; M [GeV]; Entries",200,1.5648,2.1648);
471     TH1F *tmpBl=(TH1F*)tmpBt->Clone();
472     tmpBt->Sumw2();
473     tmpBl->Sumw2();
474
475     //Reflection: histo filled with D0Mass which pass the cut (also) as D0bar and with D0bar which pass (also) the cut as D0
476     TH1F* tmpRt = new TH1F(nameRfl.Data(), "Reflected signal invariant mass - MC; M [GeV]; Entries",200,1.5648,2.1648);
477     TH1F *tmpRl=(TH1F*)tmpRt->Clone();
478     tmpRt->Sumw2();
479     tmpRl->Sumw2();
480   //  printf("Created histograms %s\t%s\t%s\t%s\n",tmpM->GetName(),tmpS->GetName(),tmpB->GetName(),tmpR->GetName());
481
482     fOutputMass->Add(tmpMt);
483     fOutputMass->Add(tmpSt);
484     //    fOutputMass->Add(tmpS27t);
485     fOutputMass->Add(tmpBt);
486     fOutputMass->Add(tmpRt);
487
488     fDistr->Add(tmpMS);
489     fDistr->Add(tmpMB);
490
491
492   }
493
494   if(fArray==1){
495     namedistr="hpospair";
496     TH1F* hpospair=new TH1F(namedistr.Data(),"Number of positive pairs",2*fCuts->GetNPtBins(),-0.5,fCuts->GetNPtBins()-0.5);
497     namedistr="hnegpair";
498     TH1F* hnegpair=new TH1F(namedistr.Data(),"Number of negative pairs",fCuts->GetNPtBins(),-0.5,2*fCuts->GetNPtBins()-0.5);
499     fDistr->Add(hpospair);
500     fDistr->Add(hnegpair);
501   }
502
503   const char* nameoutput=GetOutputSlot(3)->GetContainer()->GetName();
504
505   fNentries=new TH1F(nameoutput, "Integral(1,2) = number of AODs *** Integral(2,3) = number of candidates selected with cuts *** Integral(3,4) = number of D0 selected with cuts *** Integral(4,5) = events with good vertex ***  Integral(5,6) = pt out of bounds", 14,-0.5,13.5);
506
507   fNentries->GetXaxis()->SetBinLabel(1,"nEventsAnal");
508   fNentries->GetXaxis()->SetBinLabel(2,"nCandSel(Cuts)");
509   fNentries->GetXaxis()->SetBinLabel(3,"nD0Selected");
510   fNentries->GetXaxis()->SetBinLabel(4,"nEventsGoodVtxS");
511   fNentries->GetXaxis()->SetBinLabel(5,"ptbin = -1");
512   fNentries->GetXaxis()->SetBinLabel(6,"no daughter");
513   fNentries->GetXaxis()->SetBinLabel(7,"nCandSel(Tr)");
514   fNentries->GetXaxis()->SetBinLabel(8,"PID=0");
515   fNentries->GetXaxis()->SetBinLabel(9,"PID=1");
516   fNentries->GetXaxis()->SetBinLabel(10,"PID=2");
517   fNentries->GetXaxis()->SetBinLabel(11,"PID=3");
518   fNentries->GetXaxis()->SetBinLabel(12,"K");
519   fNentries->GetXaxis()->SetBinLabel(13,"Lambda");
520   fNentries->GetXaxis()->SetBinLabel(14,"Pile-up Rej");
521   fNentries->GetXaxis()->SetNdivisions(1,kFALSE);
522
523   fCounter = new AliNormalizationCounter(Form("%s",GetOutputSlot(5)->GetContainer()->GetName()));
524
525   // Post the data
526   PostData(1,fOutputMass);
527   PostData(2,fDistr);
528   PostData(3,fNentries);
529   PostData(5,fCounter);  
530   return;
531 }
532
533 //________________________________________________________________________
534 void AliAnalysisTaskSED0Mass::UserExec(Option_t */*option*/)
535 {
536   // Execute analysis for current event:
537   // heavy flavor candidates association to MC truth
538   //cout<<"I'm in UserExec"<<endl;
539
540
541     //cuts order
542     //       printf("    |M-MD0| [GeV]    < %f\n",fD0toKpiCuts[0]);
543     //     printf("    dca    [cm]  < %f\n",fD0toKpiCuts[1]);
544     //     printf("    cosThetaStar     < %f\n",fD0toKpiCuts[2]);
545     //     printf("    pTK     [GeV/c]    > %f\n",fD0toKpiCuts[3]);
546     //     printf("    pTpi    [GeV/c]    > %f\n",fD0toKpiCuts[4]);
547     //     printf("    |d0K|  [cm]  < %f\n",fD0toKpiCuts[5]);
548     //     printf("    |d0pi| [cm]  < %f\n",fD0toKpiCuts[6]);
549     //     printf("    d0d0  [cm^2] < %f\n",fD0toKpiCuts[7]);
550     //     printf("    cosThetaPoint    > %f\n",fD0toKpiCuts[8]);
551   
552
553   AliAODEvent *aod = dynamic_cast<AliAODEvent*> (InputEvent());
554
555   TString bname;
556   if(fArray==0){ //D0 candidates
557     // load D0->Kpi candidates
558     //cout<<"D0 candidates"<<endl;
559     bname="D0toKpi";
560   } else { //LikeSign candidates
561     // load like sign candidates
562     //cout<<"LS candidates"<<endl;
563     bname="LikeSign2Prong";
564   }
565
566   TClonesArray *inputArray=0;
567  
568   if(!aod && AODEvent() && IsStandardAOD()) {
569     // In case there is an AOD handler writing a standard AOD, use the AOD 
570     // event in memory rather than the input (ESD) event.    
571     aod = dynamic_cast<AliAODEvent*> (AODEvent());
572     // in this case the braches in the deltaAOD (AliAOD.VertexingHF.root)
573     // have to taken from the AOD event hold by the AliAODExtension
574     AliAODHandler* aodHandler = (AliAODHandler*) 
575       ((AliAnalysisManager::GetAnalysisManager())->GetOutputEventHandler());
576
577     if(aodHandler->GetExtensions()) {
578       AliAODExtension *ext = (AliAODExtension*)aodHandler->GetExtensions()->FindObject("AliAOD.VertexingHF.root");
579       AliAODEvent* aodFromExt = ext->GetAOD();
580       inputArray=(TClonesArray*)aodFromExt->GetList()->FindObject(bname.Data());
581     }
582   } else {
583     inputArray=(TClonesArray*)aod->GetList()->FindObject(bname.Data());
584   }
585
586
587   if(!inputArray) {
588     printf("AliAnalysisTaskSED0Mass::UserExec: input branch not found!\n");
589     return;
590   }
591   
592   // fix for temporary bug in ESDfilter
593   // the AODs with null vertex pointer didn't pass the PhysSel
594   if(!aod->GetPrimaryVertex() || TMath::Abs(aod->GetMagneticField())<0.001) return;
595
596
597   TClonesArray *mcArray = 0;
598   AliAODMCHeader *mcHeader = 0;
599
600   if(fReadMC) {
601     // load MC particles
602     mcArray = (TClonesArray*)aod->GetList()->FindObject(AliAODMCParticle::StdBranchName());
603     if(!mcArray) {
604       printf("AliAnalysisTaskSED0Mass::UserExec: MC particles branch not found!\n");
605       return;
606     }
607     
608     // load MC header
609     mcHeader = (AliAODMCHeader*)aod->GetList()->FindObject(AliAODMCHeader::StdBranchName());
610     if(!mcHeader) {
611       printf("AliAnalysisTaskSED0Mass::UserExec: MC header branch not found!\n");
612       return;
613     }
614   }
615   
616   //printf("VERTEX Z %f %f\n",vtx1->GetZ(),mcHeader->GetVtxZ());
617   
618   //histogram filled with 1 for every AOD
619   fNentries->Fill(0);
620   fCounter->StoreEvent(aod,fReadMC);   
621   if(!fCuts->IsEventSelected(aod)) {
622     if(fCuts->GetWhyRejection()==1) // rejected for pileup
623       fNentries->Fill(13);
624     return;
625   }
626   
627   // AOD primary vertex
628   AliAODVertex *vtx1 = (AliAODVertex*)aod->GetPrimaryVertex();
629
630   Bool_t isGoodVtx=kFALSE;
631
632    //vtx1->Print();
633   TString primTitle = vtx1->GetTitle();
634   if(primTitle.Contains("VertexerTracks") && vtx1->GetNContributors()>0) {
635     isGoodVtx=kTRUE;
636     fNentries->Fill(3);
637   }
638
639   // loop over candidates
640   Int_t nInD0toKpi = inputArray->GetEntriesFast();
641   if(fDebug>2) printf("Number of D0->Kpi: %d\n",nInD0toKpi);
642
643   // FILE *f=fopen("4display.txt","a");
644   // fprintf(f,"Number of D0->Kpi: %d\n",nInD0toKpi);
645   Int_t nSelectedloose=0,nSelectedtight=0;  
646   for (Int_t iD0toKpi = 0; iD0toKpi < nInD0toKpi; iD0toKpi++) {
647     //Int_t nPosPairs=0, nNegPairs=0;
648     //cout<<"inside the loop"<<endl;
649     AliAODRecoDecayHF2Prong *d = (AliAODRecoDecayHF2Prong*)inputArray->UncheckedAt(iD0toKpi);
650
651     //check daughters
652     if(!(d->GetDaughter(0) || d->GetDaughter(1))) {
653       AliDebug(1,"at least one daughter not found!");
654       fNentries->Fill(5);
655       continue;
656     }
657
658     // Bool_t unsetvtx=kFALSE;
659     // if(!d->GetOwnPrimaryVtx()) {
660     //   d->SetOwnPrimaryVtx(vtx1); // needed to compute all variables
661     //   unsetvtx=kTRUE;
662     // }
663   
664     
665     //check reco daughter in acceptance
666     /*
667     Double_t eta0=d->EtaProng(0);
668     Double_t eta1=d->EtaProng(1);
669     */
670     if ( fCuts->IsInFiducialAcceptance(d->Pt(),d->Y(421)) ) {
671       //if( TMath::Abs(eta0)<0.9 && TMath::Abs(eta1)<0.9 ){
672        //apply cuts on tracks
673       nSelectedloose++;
674       Int_t isSelected = fCuts->IsSelected(d,AliRDHFCuts::kTracks);
675       if(((AliAODTrack*)d->GetDaughter(0))->GetTPCNcls() < 70 || ((AliAODTrack*)d->GetDaughter(1))->GetTPCNcls() < 70) isSelected=kFALSE;
676       if (!isSelected) continue;
677       nSelectedtight++;
678       fNentries->Fill(6);       
679       if(fDebug>2) cout<<"tracks selected"<<endl;
680
681       Int_t ptbin=fCuts->PtBin(d->Pt());
682       if(ptbin==-1) {fNentries->Fill(4); continue;} //out of bounds
683       FillVarHists(aod,d,mcArray,fCuts,fDistr);
684       FillMassHists(aod,d,mcArray,fCuts,fOutputMass);
685     }
686   
687     //if(unsetvtx) d->UnsetOwnPrimaryVtx();
688   } //end for prongs
689   fCounter->StoreCandidates(aod,nSelectedloose,kTRUE);  
690   fCounter->StoreCandidates(aod,nSelectedtight,kFALSE);  
691   // Post the data
692   PostData(1,fOutputMass);
693   PostData(2,fDistr);
694   PostData(3,fNentries);
695   PostData(5,fCounter);
696   return;
697 }
698
699 //____________________________________________________________________________
700 void AliAnalysisTaskSED0Mass::FillVarHists(AliAODEvent* aod,AliAODRecoDecayHF2Prong *part, TClonesArray *arrMC, AliRDHFCutsD0toKpi *cuts, TList *listout){
701   //
702   // function used in UserExec to fill variable histograms:
703   //
704
705   //add distr here
706   UInt_t pdgs[2];
707     
708   Double_t mPDG=TDatabasePDG::Instance()->GetParticle(421)->Mass();
709   pdgs[0]=211;
710   pdgs[1]=321;
711   Double_t minvD0 = part->InvMassD0();
712   pdgs[1]=211;
713   pdgs[0]=321;
714   Double_t minvD0bar = part->InvMassD0bar();
715   //cout<<"inside mass cut"<<endl;
716
717   Int_t pdgDgD0toKpi[2]={321,211};
718   Int_t lab=-9999;
719   if(fReadMC) lab=part->MatchToMC(421,arrMC,2,pdgDgD0toKpi); //return MC particle label if the array corresponds to a D0, -1 if not (cf. AliAODRecoDecay.cxx)
720   //Double_t pt = d->Pt(); //mother pt
721   Int_t isSelected=3;
722   Int_t isSelectedPID=99;
723
724   //isSelectedPID = cuts->IsSelected(part,AliRDHFCuts::kPID); //0 rejected,1 D0,2 Dobar, 3 both
725   isSelectedPID = cuts->IsSelectedPID(part); //0 rejected,1 D0,2 Dobar, 3 both
726   if (isSelectedPID==0)fNentries->Fill(7);
727   if (isSelectedPID==1)fNentries->Fill(8);
728   if (isSelectedPID==2)fNentries->Fill(9);
729   if (isSelectedPID==3)fNentries->Fill(10);
730     //fNentries->Fill(8+isSelectedPID);
731
732   if(fCutOnDistr){
733     isSelected = cuts->IsSelected(part,AliRDHFCuts::kCandidate,aod); //cuts with variables recalculated with new vertex (w/o daughters)
734     if (!isSelected){
735       //cout<<"Not Selected"<<endl;
736       return;
737     }
738   }
739
740   Double_t invmasscut=0.03;
741
742   TString fillthispi="",fillthisK="",fillthis="";
743
744   Int_t ptbin=cuts->PtBin(part->Pt());
745
746   Double_t dz1[2],dz2[2],covar1[3],covar2[3];//,d0xd0proper,errd0xd0proper;
747   dz1[0]=-99; dz2[0]=-99;
748   Double_t d0[2];
749   Double_t decl[2]={-99,-99};
750   Bool_t recalcvtx=kFALSE;
751
752   if(fCuts->GetIsPrimaryWithoutDaughters()){
753     recalcvtx=kTRUE;
754     //recalculate vertex
755     AliAODVertex *vtxProp=0x0;
756     vtxProp=GetPrimaryVtxSkipped(aod,part);
757     if(vtxProp) {
758       part->SetOwnPrimaryVtx(vtxProp);
759       //Bool_t unsetvtx=kTRUE;
760       //Calculate d0 for daughter tracks with Vtx Skipped
761       AliESDtrack *esdtrack1=new AliESDtrack((AliVTrack*)part->GetDaughter(0));
762       AliESDtrack *esdtrack2=new AliESDtrack((AliVTrack*)part->GetDaughter(1));
763       esdtrack1->PropagateToDCA(vtxProp,aod->GetMagneticField(),1.,dz1,covar1);
764       esdtrack2->PropagateToDCA(vtxProp,aod->GetMagneticField(),1.,dz2,covar2);
765       delete vtxProp; vtxProp=NULL;
766       delete esdtrack1;
767       delete esdtrack2;
768     }
769
770     d0[0]=dz1[0];
771     d0[1]=dz2[0];
772
773     decl[0]=part->DecayLength();
774     decl[1]=part->NormalizedDecayLength();
775     part->UnsetOwnPrimaryVtx();
776   
777   }
778
779
780   if(!fCutOnDistr || (fCutOnDistr && isSelected)){ //if no cuts or cuts passed 
781     //printf("\nif no cuts or cuts passed\n");
782
783     //disable the PID
784     if(!fUsePid4Distr) isSelectedPID=0;
785     if((lab>=0 && fReadMC) || (!fReadMC && isSelectedPID)){ //signal (from MC or PID)
786    
787       //check pdg of the prongs
788       AliAODTrack *prong0=(AliAODTrack*)part->GetDaughter(0);
789       AliAODTrack *prong1=(AliAODTrack*)part->GetDaughter(1);
790       if(!prong0 || !prong1) {
791         return;
792       }
793       Int_t labprong[2];
794       if(fReadMC){
795         labprong[0]=prong0->GetLabel();
796         labprong[1]=prong1->GetLabel();
797       }
798       AliAODMCParticle *mcprong=0;
799       Int_t pdgProng[2]={0,0};
800
801       for (Int_t iprong=0;iprong<2;iprong++){
802         if(fReadMC && labprong[iprong]>=0) {
803           mcprong= (AliAODMCParticle*)arrMC->At(labprong[iprong]);
804           pdgProng[iprong]=mcprong->GetPdgCode();
805         }
806       }
807     
808
809       //no mass cut ditributions: ptbis
810         
811       // fillthispi="hptpiSnoMcut_";
812       // fillthispi+=ptbin;
813
814       // fillthisK="hptKSnoMcut_";
815       // fillthisK+=ptbin;
816
817       // if ((TMath::Abs(pdgProng[0]) == 211 && TMath::Abs(pdgProng[1]) == 321)
818       //     || (isSelectedPID==1 || isSelectedPID==3)){
819       //        ((TH1F*)listout->FindObject(fillthispi))->Fill(part->PtProng(0));
820       //        ((TH1F*)listout->FindObject(fillthisK))->Fill(part->PtProng(1));
821       // }
822
823       // if ((TMath::Abs(pdgProng[0]) == 321 && TMath::Abs(pdgProng[1]) == 211)
824       //     || (isSelectedPID==2 || isSelectedPID==3)){
825       //        ((TH1F*)listout->FindObject(fillthisK))->Fill(part->PtProng(0));
826       //        ((TH1F*)listout->FindObject(fillthispi))->Fill(part->PtProng(1));
827       // }
828       
829       //no mass cut ditributions: mass
830       fillthis="hMassS_";
831       fillthis+=ptbin;
832       
833       if ((fReadMC && ((AliAODMCParticle*)arrMC->At(lab))->GetPdgCode() == 421)
834           || (!fReadMC && (isSelectedPID==1 || isSelectedPID==3))){//D0
835         ((TH1F*)listout->FindObject(fillthis))->Fill(minvD0);
836       }
837       else { //D0bar
838         if(fReadMC || (!fReadMC && isSelectedPID > 1))
839         ((TH1F*)listout->FindObject(fillthis))->Fill(minvD0bar);
840       }
841
842       //apply cut on invariant mass on the pair
843       if(TMath::Abs(minvD0-mPDG)<invmasscut || TMath::Abs(minvD0bar-mPDG)<invmasscut){
844         
845         if(fArray==1) cout<<"LS signal: ERROR"<<endl;
846         for (Int_t iprong=0; iprong<2; iprong++){
847           AliAODTrack *prong=(AliAODTrack*)part->GetDaughter(iprong);
848           if (fReadMC) labprong[iprong]=prong->GetLabel();
849           
850           //cout<<"prong name = "<<prong->GetName()<<" label = "<<prong->GetLabel()<<endl;
851           Int_t pdgprong=0;
852           if(fReadMC && labprong[iprong]>=0) {
853             mcprong= (AliAODMCParticle*)arrMC->At(labprong[iprong]);
854             pdgprong=mcprong->GetPdgCode();
855           }
856
857           Bool_t isPionHere[2]={(isSelectedPID==1 || isSelectedPID==3) ? kTRUE : kFALSE,(isSelectedPID==2 || isSelectedPID==3) ? kTRUE : kFALSE};
858
859           if(TMath::Abs(pdgprong)==211 || isPionHere[iprong]) {
860             //cout<<"pi"<<endl;
861             
862             fillthispi="hptpiS_";
863             fillthispi+=ptbin;
864             ((TH1F*)listout->FindObject(fillthispi))->Fill(part->PtProng(iprong));
865             fillthispi="hd0piS_";
866             fillthispi+=ptbin;
867             ((TH1F*)listout->FindObject(fillthispi))->Fill(part->Getd0Prong(iprong));
868             if(recalcvtx) {
869
870               fillthispi="hd0vpiS_";
871               fillthispi+=ptbin;
872               ((TH1F*)listout->FindObject(fillthispi))->Fill(d0[iprong]);
873             }
874
875           }
876           
877           if(TMath::Abs(pdgprong)==321 || !isPionHere[iprong]) {
878             //cout<<"kappa"<<endl;
879             
880             fillthisK="hptKS_";
881             fillthisK+=ptbin;
882             ((TH1F*)listout->FindObject(fillthisK))->Fill(part->PtProng(iprong));
883             fillthisK="hd0KS_";
884             fillthisK+=ptbin;
885             ((TH1F*)listout->FindObject(fillthisK))->Fill(part->Getd0Prong(iprong));
886             if (recalcvtx){
887               fillthisK="hd0vKS_";
888               fillthisK+=ptbin;
889               ((TH1F*)listout->FindObject(fillthisK))->Fill(d0[iprong]);
890             }
891           }
892
893           fillthis="hcosthpointd0S_";
894           fillthis+=ptbin;        
895           ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),part->Getd0Prong(iprong));
896
897         } //end loop on prongs
898
899         fillthis="hdcaS_";
900         fillthis+=ptbin;          
901         ((TH1F*)listout->FindObject(fillthis))->Fill(part->GetDCA());
902
903         fillthis="hcosthetapointS_";
904         fillthis+=ptbin;          
905         ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle());
906
907         fillthis="hcosthpointd0d0S_";
908         fillthis+=ptbin;          
909         ((TH2F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),part->Prodd0d0());
910           
911         fillthis="hcosthetastarS_";
912         fillthis+=ptbin;
913         if ((fReadMC && ((AliAODMCParticle*)arrMC->At(lab))->GetPdgCode() == 421)) ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosThetaStarD0());
914         else {
915           if (fReadMC || isSelectedPID>1)((TH1F*)listout->FindObject(fillthis))->Fill(part->CosThetaStarD0bar());
916           if(isSelectedPID==1 || isSelectedPID==3)((TH1F*)listout->FindObject(fillthis))->Fill(part->CosThetaStarD0());
917         }
918         fillthis="hd0d0S_";
919         fillthis+=ptbin;
920         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Prodd0d0());
921
922         if(recalcvtx){
923           fillthis="hd0d0vS_";
924           fillthis+=ptbin;
925           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[0]*d0[1]);
926         }
927
928         fillthis="hdeclS_";
929         fillthis+=ptbin;
930         ((TH1F*)listout->FindObject(fillthis))->Fill(part->DecayLength());
931
932         fillthis="hnormdeclS_";
933         fillthis+=ptbin;
934         ((TH1F*)listout->FindObject(fillthis))->Fill(part->NormalizedDecayLength());
935
936         if(recalcvtx) {
937           fillthis="hdeclvS_";
938           fillthis+=ptbin;
939           ((TH1F*)listout->FindObject(fillthis))->Fill(decl[0]);
940
941           fillthis="hnormdeclvS_";
942           fillthis+=ptbin;
943           ((TH1F*)listout->FindObject(fillthis))->Fill(decl[1]);
944         }
945       } //end mass cut
946     
947     } else{ //Background or LS
948       //if(!fReadMC){
949       //cout<<"is background"<<endl;
950      
951       //no mass cut distributions: mass, ptbis
952       fillthis="hMassB_";
953       fillthis+=ptbin;
954       
955       if (!fCutOnDistr || (fCutOnDistr && (isSelected==1 || isSelected==3))) ((TH1F*)listout->FindObject(fillthis))->Fill(minvD0);
956       if (!fCutOnDistr || (fCutOnDistr && isSelected>1)) ((TH1F*)listout->FindObject(fillthis))->Fill(minvD0bar);
957
958       // fillthis="hptB1prongnoMcut_";
959       // fillthis+=ptbin;
960       
961       // ((TH1F*)listout->FindObject(fillthis))->Fill(part->PtProng(0));
962       
963       // fillthis="hptB2prongsnoMcut_";
964       // fillthis+=ptbin;
965       // ((TH1F*)listout->FindObject(fillthis))->Fill(part->PtProng(0));
966       // ((TH1F*)listout->FindObject(fillthis))->Fill(part->PtProng(1));
967
968       //apply cut on invariant mass on the pair
969       if(TMath::Abs(minvD0-mPDG)<invmasscut || TMath::Abs(minvD0bar-mPDG)<invmasscut){
970
971
972         AliAODTrack *prongg=(AliAODTrack*)part->GetDaughter(0);
973         if(!prongg) {
974           if(fDebug>2) cout<<"No daughter found";
975           return;
976         }
977         else{
978           if(fArray==1){
979             if(prongg->Charge()==1) {
980               //fTotPosPairs[ptbin]++;
981               ((TH1F*)fDistr->FindObject("hpospair"))->Fill(ptbin);
982             } else {
983               //fTotNegPairs[ptbin]++;
984               ((TH1F*)fDistr->FindObject("hnegpair"))->Fill(ptbin);
985             }
986           }
987         }
988         
989         //normalise pt distr to half afterwards
990         fillthis="hptB_";
991         fillthis+=ptbin;
992         ((TH1F*)listout->FindObject(fillthis))->Fill(part->PtProng(0));
993         ((TH1F*)listout->FindObject(fillthis))->Fill(part->PtProng(1));
994
995         fillthis="hd0p0B_";
996         fillthis+=ptbin;
997         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Getd0Prong(0));
998         fillthis="hd0p1B_";
999         fillthis+=ptbin;
1000         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Getd0Prong(1));
1001         fillthis="hd0B_";
1002         fillthis+=ptbin;
1003         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Getd0Prong(0));
1004         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Getd0Prong(1));
1005
1006         if(fReadMC){
1007           Int_t pdgMother[2]={0,0};
1008           Double_t factor[2]={1,1};
1009
1010           for(Int_t iprong=0;iprong<2;iprong++){
1011             AliAODTrack *prong=(AliAODTrack*)part->GetDaughter(iprong);
1012             lab=prong->GetLabel();
1013             if(lab>=0){
1014               AliAODMCParticle* mcprong=(AliAODMCParticle*)arrMC->At(lab);
1015               if(mcprong){
1016                 Int_t labmom=mcprong->GetMother();
1017                 if(labmom>=0){
1018                   AliAODMCParticle* mcmother=(AliAODMCParticle*)arrMC->At(labmom);
1019                   if(mcmother) pdgMother[iprong]=mcmother->GetPdgCode();
1020                 }
1021               }
1022             }
1023
1024             fillthis="hd0moresB_";
1025             fillthis+=ptbin;
1026           
1027             if(TMath::Abs(pdgMother[iprong])==310 || TMath::Abs(pdgMother[iprong])==130 || TMath::Abs(pdgMother[iprong])==321){ //K^0_S, K^0_L, K^+-
1028               if(part->PtProng(iprong)<=1)factor[iprong]=1./.7;
1029               else factor[iprong]=1./.6;
1030               fNentries->Fill(11);
1031             }
1032             
1033             if(TMath::Abs(pdgMother[iprong])==3122) { //Lambda
1034               factor[iprong]=1./0.25;
1035               fNentries->Fill(12);
1036             }
1037             fillthis="hd0moresB_";
1038             fillthis+=ptbin;
1039
1040             ((TH1F*)listout->FindObject(fillthis))->Fill(part->Getd0Prong(iprong),factor[iprong]);
1041
1042             if(recalcvtx){
1043               fillthis="hd0vmoresB_";
1044               fillthis+=ptbin;
1045               ((TH1F*)listout->FindObject(fillthis))->Fill(d0[iprong],factor[iprong]);
1046             }
1047
1048           }
1049
1050           fillthis="hd0d0moresB_";
1051           fillthis+=ptbin;
1052           ((TH1F*)listout->FindObject(fillthis))->Fill(part->Prodd0d0(),factor[0]*factor[1]);
1053
1054           if(recalcvtx){
1055             fillthis="hd0d0vmoresB_";
1056             fillthis+=ptbin;
1057             ((TH1F*)listout->FindObject(fillthis))->Fill(d0[0]*d0[1],factor[0]*factor[1]);
1058           }
1059           fillthis="hcosthetapointmoresB_";
1060           fillthis+=ptbin;
1061           ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),factor[0]*factor[1]);
1062         }
1063
1064         if(recalcvtx){
1065           fillthis="hd0vp0B_";
1066           fillthis+=ptbin;
1067           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[0]);
1068           fillthis="hd0vp1B_";
1069           fillthis+=ptbin;
1070           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[1]);
1071           
1072           fillthis="hd0vB_";
1073           fillthis+=ptbin;
1074           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[0]);
1075           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[1]);
1076         }  
1077
1078         fillthis="hcosthpointd0B_";
1079         fillthis+=ptbin;          
1080         ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),part->Getd0Prong(0));
1081         ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),part->Getd0Prong(1));
1082
1083
1084         fillthis="hdcaB_";
1085         fillthis+=ptbin;
1086         ((TH1F*)listout->FindObject(fillthis))->Fill(part->GetDCA());
1087
1088         fillthis="hcosthetastarB_";
1089         fillthis+=ptbin;
1090         if (!fCutOnDistr || (fCutOnDistr && (isSelected==1 || isSelected==3)))((TH1F*)listout->FindObject(fillthis))->Fill(part->CosThetaStarD0());
1091         if (!fCutOnDistr || (fCutOnDistr && isSelected>1))((TH1F*)listout->FindObject(fillthis))->Fill(part->CosThetaStarD0bar());      
1092
1093         fillthis="hd0d0B_";
1094         fillthis+=ptbin;
1095         ((TH1F*)listout->FindObject(fillthis))->Fill(part->Prodd0d0());
1096
1097         if(recalcvtx){
1098           fillthis="hd0d0vB_";
1099           fillthis+=ptbin;
1100           ((TH1F*)listout->FindObject(fillthis))->Fill(d0[0]*d0[1]);
1101         }
1102
1103         fillthis="hcosthetapointB_";
1104         fillthis+=ptbin;
1105         ((TH1F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle());
1106
1107         fillthis="hcosthpointd0d0B_";
1108         fillthis+=ptbin;
1109         ((TH2F*)listout->FindObject(fillthis))->Fill(part->CosPointingAngle(),part->Prodd0d0());
1110
1111         fillthis="hdeclB_";
1112         fillthis+=ptbin;
1113         ((TH1F*)listout->FindObject(fillthis))->Fill(part->DecayLength());
1114
1115         fillthis="hnormdeclB_";
1116         fillthis+=ptbin;
1117         ((TH1F*)listout->FindObject(fillthis))->Fill(part->NormalizedDecayLength());
1118
1119         if(recalcvtx) {
1120
1121           fillthis="hdeclvB_";
1122           fillthis+=ptbin;
1123           ((TH1F*)listout->FindObject(fillthis))->Fill(decl[0]);
1124
1125           fillthis="hnormdeclvB_";
1126           fillthis+=ptbin;
1127           ((TH1F*)listout->FindObject(fillthis))->Fill(decl[1]);
1128
1129         }
1130       }//mass cut       
1131     }//else (background)
1132   }
1133   return;
1134 }
1135 //____________________________________________________________________________
1136
1137 void AliAnalysisTaskSED0Mass::FillMassHists(AliAODEvent* aod,AliAODRecoDecayHF2Prong *part, TClonesArray *arrMC, AliRDHFCutsD0toKpi* cuts, TList *listout){
1138   //
1139   // function used in UserExec to fill mass histograms:
1140   //
1141
1142
1143   //  Double_t mPDG=TDatabasePDG::Instance()->GetParticle(421)->Mass();
1144
1145   Int_t isSelected=cuts->IsSelected(part,AliRDHFCuts::kCandidate,aod); //selected
1146
1147   //cout<<"is selected = "<<isSelected<<endl;
1148
1149   //cout<<"check cuts = "<<endl;
1150   //cuts->PrintAll();
1151   if (!isSelected){
1152     //cout<<"Not Selected"<<endl;
1153     //cout<<"Rejected because "<<cuts->GetWhy()<<endl;
1154     return;
1155   }
1156
1157
1158   if(fDebug>2)  cout<<"Candidate selected"<<endl;
1159
1160   Double_t invmassD0 = part->InvMassD0(), invmassD0bar = part->InvMassD0bar();
1161   //printf("SELECTED\n");
1162   Int_t ptbin=cuts->PtBin(part->Pt());
1163
1164   AliAODTrack *prong=(AliAODTrack*)part->GetDaughter(0);
1165   if(!prong) {
1166     AliDebug(2,"No daughter found");
1167     return;
1168   }
1169   else{
1170     // if(prong->Charge()==1) {
1171     //   ((TH1F*)fDistr->FindObject("hpospair"))->Fill(fCuts->GetNPtBins()+ptbin);
1172     //   //fTotPosPairs[ptbin]++;
1173     // } else {
1174     //   ((TH1F*)fDistr->FindObject("hnegpair"))->Fill(fCuts->GetNPtBins()+ptbin);
1175     //   //fTotNegPairs[ptbin]++;
1176     // }
1177   }
1178  
1179   // for(Int_t it=0;it<2;it++){
1180  
1181   //    //request on spd points to be addes
1182   //   if(/*nSPD==2 && */part->Pt() > 5. && (TMath::Abs(invmassD0-mPDG)<0.01 || TMath::Abs(invmassD0bar-mPDG)<0.01)){
1183   //     FILE *f=fopen("4display.txt","a");
1184   //     fprintf(f,"pt: %f \n Rapidity: %f \t Period Number: %x \t Run Number: %d \t BunchCrossNumb: %d \t OrbitNumber: %d\n",part->Pt(),part->Y(421),aod->GetPeriodNumber(),aod->GetRunNumber(),aod->GetBunchCrossNumber(),aod->GetOrbitNumber());
1185   //     fclose(f);
1186   //     //printf("PrimVtx NContributors: %d \n Prongs Rel Angle: %f \n \n",ncont,relangle);
1187   //   }
1188   // }
1189  
1190   TString fillthis="";
1191   Int_t pdgDgD0toKpi[2]={321,211};
1192   Int_t labD0=-1;
1193   if (fReadMC) labD0 = part->MatchToMC(421,arrMC,2,pdgDgD0toKpi); //return MC particle label if the array corresponds to a D0, -1 if not (cf. AliAODRecoDecay.cxx)
1194
1195   //count candidates selected by cuts
1196   fNentries->Fill(1);
1197   //count true D0 selected by cuts
1198   if (fReadMC && labD0>=0) fNentries->Fill(2);
1199
1200   if ((isSelected==1 || isSelected==3) && fFillOnlyD0D0bar<2) { //D0
1201     fillthis="histMass_";
1202     fillthis+=ptbin;
1203     //cout<<"Filling "<<fillthis<<endl;
1204
1205     //printf("Fill mass with D0");
1206     ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0);
1207  
1208     if(labD0>=0) {
1209       if(fArray==1) cout<<"LS signal ERROR"<<endl;
1210
1211       AliAODMCParticle *partD0 = (AliAODMCParticle*)arrMC->At(labD0);
1212       Int_t pdgD0 = partD0->GetPdgCode();
1213       //cout<<"pdg = "<<pdgD0<<endl;
1214       if (pdgD0==421){ //D0
1215         //cout<<"Fill S with D0"<<endl;
1216         fillthis="histSgn_";
1217         fillthis+=ptbin;
1218         ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0);
1219         // if(TMath::Abs(invmassD0 - mPDG) < 0.027){
1220         //   fillthis="histSgn27_";
1221         //   fillthis+=ptbin;
1222         //   ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0);
1223         // }
1224       } else{ //it was a D0bar
1225         fillthis="histRfl_";
1226         fillthis+=ptbin;
1227         ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0);
1228       }
1229     } else {//background
1230       fillthis="histBkg_";
1231       fillthis+=ptbin;
1232       ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0);
1233     }
1234       
1235   }
1236   if (isSelected>1 && (fFillOnlyD0D0bar==0 || fFillOnlyD0D0bar==2)) { //D0bar
1237     fillthis="histMass_";
1238     fillthis+=ptbin;
1239     //printf("Fill mass with D0bar");
1240     ((TH1F*)listout->FindObject(fillthis))->Fill(invmassD0bar);
1241  
1242     if(labD0>=0) {
1243       if(fArray==1) cout<<"LS signal ERROR"<<endl;
1244       AliAODMCParticle *partD0 = (AliAODMCParticle*)arrMC->At(labD0);
1245       Int_t pdgD0 = partD0->GetPdgCode();
1246       //cout<<" pdg = "<<pdgD0<<endl;
1247       if (pdgD0==-421){ //D0bar
1248         fillthis="histSgn_";
1249         fillthis+=ptbin;
1250         ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0bar);
1251         // if (TMath::Abs(invmassD0bar - mPDG) < 0.027){
1252         //   fillthis="histSgn27_";
1253         //   fillthis+=ptbin;
1254         //   ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0bar);
1255         // }
1256
1257           
1258       } else{
1259         fillthis="histRfl_";
1260         fillthis+=ptbin;
1261         ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0bar);
1262       }
1263     } else {//background or LS
1264       fillthis="histBkg_";
1265       fillthis+=ptbin;
1266       ((TH1F*)(listout->FindObject(fillthis)))->Fill(invmassD0bar);
1267     }
1268   }
1269
1270   return;
1271 }
1272
1273 //__________________________________________________________________________
1274 AliAODVertex* AliAnalysisTaskSED0Mass::GetPrimaryVtxSkipped(AliAODEvent *aodev,AliAODRecoDecayHF2Prong *d){
1275   //Calculate the primary vertex w/o the daughter tracks of the candidate
1276   
1277   Int_t skipped[2];
1278   Int_t nTrksToSkip=2;
1279   AliAODTrack *dgTrack = (AliAODTrack*)d->GetDaughter(0);
1280   if(!dgTrack){
1281     AliDebug(2,"no daughter found!");
1282     return 0x0;
1283   }
1284   skipped[0]=dgTrack->GetID();
1285   dgTrack = (AliAODTrack*)d->GetDaughter(1);
1286   if(!dgTrack){
1287     AliDebug(2,"no daughter found!");
1288     return 0x0;
1289   }
1290   skipped[1]=dgTrack->GetID();
1291
1292   AliESDVertex *vertexESD=0x0;
1293   AliAODVertex *vertexAOD=0x0;
1294   AliVertexerTracks *vertexer = new AliVertexerTracks(aodev->GetMagneticField());
1295   
1296   //
1297   vertexer->SetSkipTracks(nTrksToSkip,skipped);
1298   vertexer->SetMinClusters(4);  
1299   vertexESD = (AliESDVertex*)vertexer->FindPrimaryVertex(aodev); 
1300   if(!vertexESD) return vertexAOD;
1301   if(vertexESD->GetNContributors()<=0) { 
1302     AliDebug(2,"vertexing failed"); 
1303     delete vertexESD; vertexESD=NULL;
1304     return vertexAOD;
1305   }
1306   
1307   delete vertexer; vertexer=NULL;
1308   
1309   
1310   // convert to AliAODVertex
1311   Double_t pos[3],cov[6],chi2perNDF;
1312   vertexESD->GetXYZ(pos); // position
1313   vertexESD->GetCovMatrix(cov); //covariance matrix
1314   chi2perNDF = vertexESD->GetChi2toNDF();
1315   delete vertexESD; vertexESD=NULL;
1316   
1317   vertexAOD = new AliAODVertex(pos,cov,chi2perNDF);
1318   return vertexAOD;
1319   
1320 }
1321
1322
1323 //________________________________________________________________________
1324 void AliAnalysisTaskSED0Mass::Terminate(Option_t */*option*/)
1325 {
1326   // Terminate analysis
1327   //
1328   if(fDebug > 1) printf("AnalysisTaskSED0Mass: Terminate() \n");
1329
1330
1331   fOutputMass = dynamic_cast<TList*> (GetOutputData(1));
1332   if (!fOutputMass) {     
1333     printf("ERROR: fOutputMass not available\n");
1334     return;
1335   }
1336   fDistr = dynamic_cast<TList*> (GetOutputData(2));
1337   if (!fDistr) {
1338     printf("ERROR: fDistr not available\n");
1339     return;
1340   }
1341  
1342   fNentries = dynamic_cast<TH1F*>(GetOutputData(3));
1343   
1344   if(!fNentries){
1345     printf("ERROR: fNEntries not available\n");
1346     return;
1347   }
1348   fCuts = dynamic_cast<AliRDHFCutsD0toKpi*>(GetOutputData(4));
1349   if(!fCuts){
1350     printf("ERROR: fCuts not available\n");
1351     return;
1352   }
1353   fCounter = dynamic_cast<AliNormalizationCounter*>(GetOutputData(5));    
1354   if (!fCounter) {
1355     printf("ERROR: fCounter not available\n");
1356     return;
1357   }
1358   Int_t nptbins=fCuts->GetNPtBins();
1359   for(Int_t ipt=0;ipt<nptbins;ipt++){ 
1360
1361     if(fArray==1){ 
1362       fLsNormalization = 2.*TMath::Sqrt(((TH1F*)fDistr->FindObject("hpospair"))->Integral(nptbins+ipt+1,nptbins+ipt+2)*((TH1F*)fDistr->FindObject("hnegpair"))->Integral(nptbins+ipt+1,nptbins+ipt+2)); //after cuts
1363
1364
1365       if(fLsNormalization>1e-6) {
1366         
1367         TString massName="histMass_";
1368         massName+=ipt;
1369         ((TH1F*)fOutputMass->FindObject(massName))->Scale((1/fLsNormalization)*((TH1F*)fOutputMass->FindObject(massName))->GetEntries());
1370
1371       }
1372     
1373
1374       fLsNormalization = 2.*TMath::Sqrt(((TH1F*)fDistr->FindObject("hpospair"))->Integral(ipt+1,ipt+2)*((TH1F*)fDistr->FindObject("hnegpair"))->Integral(ipt+1,ipt+2)); 
1375       //fLsNormalization = 2.*TMath::Sqrt(fTotPosPairs[4]*fTotNegPairs[4]);
1376
1377       if(fLsNormalization>1e-6) {
1378
1379         TString nameDistr="hptB_";
1380         nameDistr+=ipt;
1381         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1382         nameDistr="hdcaB_";
1383         nameDistr+=ipt;
1384         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1385         nameDistr="hcosthetastarB_";
1386         nameDistr+=ipt;
1387         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1388         nameDistr="hd0B_";
1389         nameDistr+=ipt;
1390         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1391         nameDistr="hd0d0B_";
1392         nameDistr+=ipt;
1393         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1394         nameDistr="hcosthetapointB_";
1395         nameDistr+=ipt;
1396         ((TH1F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH1F*)fDistr->FindObject(nameDistr))->GetEntries());
1397         nameDistr="hcosthpointd0d0B_";
1398         nameDistr+=ipt;
1399         ((TH2F*)fDistr->FindObject(nameDistr))->Scale((1/fLsNormalization)*((TH2F*)fDistr->FindObject(nameDistr))->GetEntries());
1400
1401       }
1402     }
1403   }
1404   TString cvname,cstname;
1405
1406   if (fArray==0){
1407     cvname="D0invmass";
1408     cstname="cstat0";
1409   } else {
1410     cvname="LSinvmass";
1411     cstname="cstat1";
1412   }
1413
1414   TCanvas *cMass=new TCanvas(cvname,cvname);
1415   cMass->cd();
1416   ((TH1F*)fOutputMass->FindObject("histMass_3"))->Draw();
1417
1418   TCanvas* cStat=new TCanvas(cstname,Form("Stat%s",fArray ? "LS" : "D0"));
1419   cStat->cd();
1420   cStat->SetGridy();
1421   fNentries->Draw("htext0");
1422
1423   // TCanvas *ccheck=new TCanvas(Form("cc%d",fArray),Form("cc%d",fArray));
1424   // ccheck->cd();
1425
1426   return;
1427 }
1428