PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kTRUE;  // switch of AOD filling for on the fly analysis
  35 Bool_t      kFilterAOD = kTRUE;
  36 Float_t     kJetTriggerPtCut = 20; // pT for jet trigger in case of iFilter==2
  37 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  38 //== general input and output variables
  39
  40 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  41 Int_t       iFilterAnalysis       = 0;      // Analysis on input AOD's
  42 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  43 Int_t       iCentralitySelection  = 0;      // Use the centrality
  44 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  45 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  46 UInt_t      iPhysicsSelectionFlag = 1; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  47 Bool_t      useTender           = kFALSE; // use tender wagon
  48 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  49 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  50 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  51 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  52
  53
  54 //== general process variables
  55
  56 // ### Other flags to steer the analysis
  57 //==============================================================================
  58 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  59 Bool_t      kUseDate            = kFALSE; // use date in train name
  60 Bool_t      kUseDebug           = kTRUE; // activate debugging
  61 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  62 // From TError.h:
  63 // const Int_t kUnset    =  -1;
  64 // const Int_t kPrint    =   0;
  65 // const Int_t kInfo     =   1000;
  66 // const Int_t kWarning  =   2000;
  67 // const Int_t kError    =   3000;
  68 // const Int_t kBreak    =   4000;
  69 // const Int_t kSysError =   5000;
  70 // const Int_t kFatal    =   6000;
  71 Int_t         kUseSysInfo         = 0; // activate debugging
  72 Long64_t    kNumberOfEvents     = 1234567890; // number of events to process from the chain
  73 Bool_t      kUseMC              = kTRUE;  // use MC info
  74 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  75 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  76 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  77 Bool_t      kUseTR              = kFALSE;  // use track references
  78 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  79 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  80 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  81
  82
  83 // ### Analysis modules to be included. Some may not be yet fully implemented.
  84 //==============================================================================
  85 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  86 Int_t       iJETSUBTRACT        = 1;      // Jet background subtration
  87 TList       kJetListSpectrum;             // list of jets contains TObjString of possible jet finder names
  88 TExMap      kJetMapSpectrum;             // Maps the jet finder pairs to be used in the spectrum task second number negative no pair other wise (j1+1) + (1000 * (j2+1)) +10000 * (j3+1)
  89 TExMap      kJetBackMapSpectrum;             // Maps the jet finder pairs with the background branch used, just for countint of trackrefs
  90 Int_t       kJetMapOffset[3] = {10000,100,1};
  91 TString     kDefaultJetBranch     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  92 TString     kDefaultJetBackgroundBranch            = "";      // is currently set when filled (jet clsuters
  93 TString     kDefaultJetBackgroundBranchCut1        = "";      // is currently set when filled (jet clsuters
  94 TString     kDefaultJetBackgroundBranchCut2        = "";      // is currently set when filled (jet clsuters
  95 TString     kDefaultJetBackgroundBranch_extra     = "";      // is currently set when filled (jet clsuters)
  96 TString     kJetSubtractBranches     = "";      // is currently set when filled (jet clsuters
  97 TString     kJetSubtractBranchesCut1     = "";      // is currently set when filled (jet clsuters
  98 TString     kJetSubtractBranchesCut2     = "";      // is currently set when filled (jet clsuters
  99 TString     kJetSubtractBranches_extra     = "";      // is currently set when filled (jet clsuters
 100
 101 TString     kDefaultJetBranchMC     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 102 TString     kDefaultJetBackgroundBranchMC     = "";      // is currently set when filled (jet clsuters
 103 TString     kDefaultJetBranchMC2     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 104 TString     kDefaultJetBackgroundBranchMC2     = "";      // is currently set when filled (jet clsuters
 105 TString     kJetSubtractMask1 = "B0";
 106 TString     kJetSubtractMask2 = "B%d";
 107 Int_t       iDIJETAN           = 1;
 108 Int_t       iJETANLib          = 1;
 109 Int_t       iPWG1QASym         = 0;      // Eva's QA task compiled on the fly...
 110 Int_t       iPWG4FastEmbedding = 0;      // Generate non-standard AOD for embedding
 111 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
 112 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
 113 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
 114 Int_t       iPWG4JetResponse   = 0;      // jet response matrix
 115 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
 116 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
 117 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
 118 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
 119 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
 120 Int_t       iPWG4Fragmentation = 1;      // Official Fragmentation
 121 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
 122 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
 123 Int_t       iPWG4PtTrackQA     = 0;      // Marta's QA tasks
 124 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
 125 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
 126 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
 127 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
 128 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
 129 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 130 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 131 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 132 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 133 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 134 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 135 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 136 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 137 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 138 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 139 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 140 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 141 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 142 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 143 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 144 TString     kDeltaAODJetNameInput   = "";
 145 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 146 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
 147 TString     kFastEmbeddingAOD  = "emb/AliAOD.root";
 148 TString     kFastEmbAODList    = "";
 149
 150 //==============================================================================
 151 // ### PROOF Steering varibales
 152 //==============================================================================
 153 //== proof setup variables
 154 TString     kProofCluster      = "alicecaf.cern.ch";
 155 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 156 TString     kProofAFversion          = "AF-v4-17";
 157 //== proof input and output variables
 158 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 159 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 160 TString     kProofOutdir       = "";
 161 Bool_t      kProofClearPackages = kFALSE;
 162 Int_t       kProofEvents = 10000;
 163 Int_t       kProofOffset = 0;
 164 //== proof process variables
 165
 166
 167 //==============================================================================
 168 // ### Grid plugin Steering varibiables
 169 //==============================================================================
 170 //== grid plugin setup variables
 171 Bool_t      kPluginUse         = kTRUE;   // do not change
 172 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 173 TString     kPluginRootVersion       = "v5-28-00c";  // *CHANGE ME IF MORE RECENT IN GRID*
 174 TString     kPluginAliRootVersion    = "v4-21-01a-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 175 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 176 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 177 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 178 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 179 // TString kPluginExecutableCommand = "root -b -q";
 180 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 181
 182 // == grid plugin input and output variables
 183 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 184 Int_t         kGridMaxRunsFromList = 999999999;
 185 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 186 TString     kGridLocalRunList = "";
 187 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 188 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 189 TString     kGridExtraAliendirLevel = ""; // sub working directory not to confuse different run xmls
 190 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 191 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 192 TString     kGridPassPattern       = "";
 193 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 194 Int_t         kGridMaxMergeFiles      = 25; // Number of files merged in a chunk grid run range
 195 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 196 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 197 // == grid process variables
 198 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 199 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 200
 201 //==============================================================================
 202 // ### Local Steering variables
 203 //==============================================================================
 204 //== local setup variables
 205 //== local input and output variables
 206 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 207 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 208 // == local process variables
 209
 210 TString kPluginMode = "";
 211 TString kAnalysisMode = "";
 212
 213
 214 // Temporaries.
 215 TString anaPars = "";
 216 TString anaLibs = "";
 217 TString anaLibsExtra = "";
 218 TString anaSources = "";
 219 // Function signatures
 220 class AliAnalysisAlien;
 221 class AliAnalysisManager;
 222
 223 //______________________________________________________________________________
 224 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 225                            const char *plugin_mode="",
 226                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 227 {
 228 // Main analysis train macro. If a configuration file is provided, all parameters
 229 // are taken from there but may be altered by CheckModuleFlags.
 230
 231   // these flag may be needed by the config file
 232   kPluginMode   = plugin_mode;
 233   kAnalysisMode = analysis_mode;
 234
 235   if (strlen(config_file) && !LoadConfig(config_file)) return;
 236   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 237   if(iOffset)kGridOffsetRunFromList = iOffset;
 238   if(iOffset)kProofOffset = iOffset;
 239
 240
 241    TString smode(analysis_mode);
 242    smode.ToUpper();
 243    if (kSaveTrain)WriteConfig();
 244    // Check compatibility of selected modules
 245    CheckModuleFlags(smode);
 246    //     gROOT->ProcessLine(".trace");
 247
 248    printf("==================================================================\n");
 249    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 250    printf("==================================================================\n");
 251                               printf("=  Configuring analysis train for:                               =\n");
 252    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 253    else                     printf("=  ESD analysis                                                  =\n");
 254    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 255    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 256    if (useTender)   printf("=  Using tender                                                =\n");
 257    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 258    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 259    printf("==================================================================\n");
 260
 261    char *printMask = ":: %20s  %10d\n";
 262    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 263    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 264    printf(printMask,"MC truth", (UInt_t)kUseMC);
 265    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 266    printf(printMask,"track refs", (UInt_t)kUseTR);
 267    printf(printMask,"tags", (UInt_t)kUseESDTags);
 268    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 269    printf(printMask,"debugging", (UInt_t)kUseDebug);
 270    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 271    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 272    printf(printMask,"JETAN subtract", (UInt_t)iJETSUBTRACT);
 273    printf(printMask,"PWG1 QA sym", iPWG1QASym);
 274    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 275    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 276    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 277    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 278    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 279    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 280    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 281    printf(printMask,"PWG4 UE",iPWG4UE);
 282    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 283    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 284    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 285    printf(printMask,"PWG4 Pt QA track",iPWG4PtTrackQA);
 286    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 287    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 288    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 289    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 290    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 291    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 292    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 293    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 294    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 295    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 296    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 297    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 298    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 299    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 300    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 301    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 302    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 303
 304    //==========================================================================
 305    // Connect to back-end system
 306    if (!Connect(smode)) {
 307       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 308       return;
 309    }
 310
 311    // Load common libraries and set include path
 312    if (!LoadCommonLibraries(smode)) {
 313       ::Error("AnalysisTrain", "Could not load common libraries");
 314       return;
 315    }
 316
 317
 318
 319    // Make the analysis manager and connect event handlers
 320    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 321    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 322    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 323    mgr->SetNSysInfo(0);
 324    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 325    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 326    mgr->SetSkipTerminate(kSkipTerminate);
 327
 328    // Load analysis specific libraries
 329    if (!LoadAnalysisLibraries(smode)) {
 330       ::Error("AnalysisTrain", "Could not load analysis libraries");
 331      return;
 332    }
 333
 334    // Create input handler (input container created automatically)
 335    if (iAODanalysis) {
 336    // AOD input handler
 337       AliAODInputHandler *aodH = new AliAODInputHandler();
 338       mgr->SetInputEventHandler(aodH);
 339       if (kDeltaAODJetNameInput.Length()){
 340         Printf("Adding Friend %s",kDeltaAODJetNameInput.Data());
 341         aodH->AddFriend(kDeltaAODJetNameInput.Data());
 342       }
 343       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 344    } else {
 345    // ESD input handler
 346       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 347       if (kUseESDTags) esdHandler->SetReadTags();
 348       esdHandler->SetReadFriends(kFALSE);
 349       mgr->SetInputEventHandler(esdHandler);
 350       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 351
 352    }
 353
 354    // Monte Carlo handler
 355    if (kUseMC && !iAODanalysis) {
 356       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 357       mgr->SetMCtruthEventHandler(mcHandler);
 358       mcHandler->SetReadTR(kUseTR);
 359    }
 360    // AOD output container, created automatically when setting an AOD handler
 361    if (iAODhandler) {
 362       // AOD output handler
 363       AliAODHandler* aodHandler   = new AliAODHandler();
 364       aodHandler->SetOutputFileName("AliAOD.root");
 365       aodHandler->SetFillAODforRun(kFillAOD);
 366       //
 367       mgr->SetOutputEventHandler(aodHandler);
 368       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 369       cout_aod->SetSpecialOutput();
 370    }
 371    // Debugging if needed
 372
 373    if (kUseDebug){
 374      mgr->SetDebugLevel(3);
 375    }
 376    if(kUseSysInfo>0){
 377      mgr->RegisterExtraFile("syswatch.root");
 378      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 379      kGridMergeExclude += "syswatch.root";
 380    }
 381    else{
 382      AliLog::SetGlobalLogLevel(AliLog::kError);
 383    }
 384
 385
 386    //==========================================================================
 387    // Create the chain. In this example it is created only from ALIEN files but
 388    // can be done to work in batch or grid mode as well.
 389    TChain *chain = CreateChain(smode, plugin_mode);
 390
 391    //==========================================================================
 392    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 393    // in the current workdir, but in AliEn they will be in the file catalog,
 394    // mapped from AliRoot and pecified in the jdl input list.
 395
 396    // For now connection to top input container and common AOD output container
 397    // is done in this macro, but in future these containers will be connected
 398    // from each task configuration macro.
 399
 400    //
 401    // Tender and supplies. Needs to be called for every event.
 402    //
 403
 404    if (useTender) {
 405       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 406       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 407       //      tender->SelectCollisionCandidates();
 408       tender->SetDebugLevel(2);
 409    }
 410
 411
 412    Float_t fTrackEtaWindow = 0.9;
 413    Float_t fJetEtaWindow   = 0.5;
 414
 415    /*
 416    if(kIsPbPb){// for pass1
 417      Float_t fTrackEtaWindow = 0.8;
 418      Float_t fJetEtaWindow   = 0.4;
 419    }
 420    */
 421
 422
 423    if(iPhysicsSelection && !iAODanalysis){
 424      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 425      Int_t iTriggerHIC = 0;
 426      Bool_t rejectBkg = true;
 427      if(kIsPbPb){
 428        iTriggerHIC = 2;
 429        rejectBkg = false; // for the moment...
 430      }
 431      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
 432
 433      mgr->RegisterExtraFile("EventStat_temp.root");
 434      mgr->AddStatisticsTask();
 435    }
 436    else{
 437      iPhysicsSelectionFlag = AliVEvent::kMB;
 438    }
 439
 440    if(kIsPbPb&&!iAODanalysis){
 441
 442      // has to run before AOD filter
 443      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
 444      AliCentralitySelectionTask *taskC = AddTaskCentrality();
 445       if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 446
 447
 448      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskEventplane.C");
 449      AliEPSelectionTask *taskEP = AddTaskEventplane();
 450      if (!taskEP) ::Warning("AnalysisTrainPWG4Jets", "AliEventplan cannot run for this train conditions - EXCLUDED");
 451    }
 452
 453    if (iESDfilter && !iAODanalysis) {
 454       //  ESD filter task configuration.
 455       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 456       // switch on centrality make for PbPb
 457       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter); // carefull, if physics selection is enabled you may get not primary vertex pointer later on...
 458       taskesdfilter->SetEnableFillAOD(!kFilterAOD);
 459       taskesdfilter->DisableV0s();
 460       taskesdfilter->DisableCascades();
 461       taskesdfilter->DisableKinks();
 462       taskesdfilter->DisablePmdClusters();
 463       taskesdfilter->DisableCaloClusters();
 464       taskesdfilter->DisableCells();
 465
 466       if(kIsMC){
 467         mgr->RegisterExtraFile("pyxsec_hists.root");
 468         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 469         kGridMergeExclude += "pyxsec_hists.root";
 470
 471       }
 472    }
 473
 474    // AOD tags
 475    if (kUseAODTags) {
 476       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 477       mgr->AddTask(tagTask);
 478       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 479                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 480       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 481       mgr->ConnectOutput(tagTask, 1, coutTags);
 482    }
 483
 484    if (iPWG4FastEmbedding) {
 485      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFastEmbedding.C");
 486      AliAnalysisTaskFastEmbedding *taskEmbedding = 0;
 487      if(kFastEmbAODList.Length()) taskEmbedding = AddTaskFastEmbedding(kFastEmbAODList, 1);
 488      else                         taskEmbedding = AddTaskFastEmbedding(kFastEmbeddingAOD, 0);
 489      taskEmbedding->SetJetBranch("jetsAOD_UA104_B0_Filter00256_Cut01000");
 490      // taskEmbedding->SetEvtSelecMode(AliAnalysisTaskFastEmbedding::kEventsAll);
 491      // taskEmbedding->SetDebugLevel(10);
 492    }
 493
 494     // Jet analysis
 495    if (iJETAN) {
 496       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 497       AliAnalysisTaskJets *taskjets = 0;
 498       if(iJETAN&1){
 499         /*
 500         taskjets = AddTaskJets(kHighPtFilterMask);
 501         taskjets->SetName("StandardJets");
 502         taskjets->SetNonStdBranch("");
 503         */
 504       }
 505       if(iJETAN&2){
 506         // Set only few jet finders  backgroudn subtraction w an wo
 507
 508         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 509         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 510         TString cTmp("");
 511         cTmp = taskjets->GetNonStdBranch();
 512         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 513
 514         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,0); // no background subtraction
 515         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 516         TString cTmp("");
 517         cTmp = taskjets->GetNonStdBranch();
 518         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 519
 520
 521         // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 522         if(kIsPbPb){
 523           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 524           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 525           cTmp = taskjets->GetNonStdBranch();
 526           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 527           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,2); // background subtraction
 528           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 529           cTmp = taskjets->GetNonStdBranch();
 530           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 531         }
 532
 533
 534
 535         // SICONE
 536         /*
 537         taskjets = AddTaskJets("AOD","SISCONE",0.4,kHighPtFilterMask,0.15,0); //no background subtraction to be done later....
 538         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 539         cTmp = taskjets->GetNonStdBranch();
 540         if(cTmp.Length()>0)kJetSubtractBranches += Form("%s ",cTmp.Data());
 541         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 542         */
 543         if(kUseAODMC){
 544           // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 545           if(kIsPbPb){
 546             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 547             cTmp = taskjets->GetNonStdBranch();
 548             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 549             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 550             cTmp = taskjets->GetNonStdBranch();
 551             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 552           }
 553           else{
 554             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 555             cTmp = taskjets->GetNonStdBranch();
 556             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 557             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 558             cTmp = taskjets->GetNonStdBranch();
 559             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 560           }
 561         }
 562         if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 563       }
 564       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 565    }
 566
 567
 568    if (iPWG4FastEmbedding && iJETAN) {
 569      AliAnalysisTaskJets *taskEmbJets = AddTaskJets("AODextra", "FASTJET", 0.4, kHighPtFilterMask);
 570      taskEmbJets->ReadAODFromOutput();
 571      kJetSubtractBranches_extra += Form("%s ", taskEmbJets->GetNonStdBranch());
 572
 573      taskEmbJets = AddTaskJets("AODextraonly", "FASTJET", 0.4, kHighPtFilterMask);
 574      taskEmbJets->ReadAODFromOutput();
 575
 576      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,0);
 577      taskEmbJets->ReadAODFromOutput();
 578      taskEmbJets = AddTaskJets("AODextraonly", "UA1", 0.4, kHighPtFilterMask,1.,0);
 579      taskEmbJets->ReadAODFromOutput();
 580      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,2);
 581      taskEmbJets->ReadAODFromOutput();
 582    }
 583
 584    if(iPWG4Cluster){
 585      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 586      AliAnalysisTaskJetCluster *taskCl = 0;
 587      Float_t fCenUp = 0;
 588      Float_t fCenLo = 0;
 589      if(kIsPbPb&&!kIsMC){
 590        fCenLo = 0;
 591        fCenUp = 80;
 592      }
 593      if(iPWG4Cluster&1){
 594
 595        if(kIsPbPb){
 596          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,0); // this one is for the background and random jets, random cones with no skip
 597          taskCl->SetBackgroundCalc(kTRUE);
 598          taskCl->SetNRandomCones(1);
 599          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 600          //      taskCl->SetDebugLevel(11);
 601          taskCl->SetCentralityCut(fCenLo,fCenUp);
 602          taskCl->SetGhostEtamax(fTrackEtaWindow);
 603          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 604          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 605          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 606          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 607          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 608          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 609
 610          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,0); // this one is for the background and random jets, random cones with no skip
 611          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 612          taskCl->SetNRandomCones(1);
 613          taskCl->SetBackgroundCalc(kTRUE);
 614          taskCl->SetCentralityCut(fCenLo,fCenUp);
 615          taskCl->SetGhostEtamax(fTrackEtaWindow);
 616          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 617          kDefaultJetBackgroundBranchCut1 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 618          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 619          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 620          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 621          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 622          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 623
 624          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),2.0,fTrackEtaWindow,0); // this one is for the background and random jets, random cones with no skip
 625          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 626          taskCl->SetNRandomCones(1);
 627          taskCl->SetBackgroundCalc(kTRUE);
 628          taskCl->SetCentralityCut(fCenLo,fCenUp);
 629          taskCl->SetGhostEtamax(fTrackEtaWindow);
 630          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 631          kDefaultJetBackgroundBranchCut2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 632          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 633          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 634          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 635          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 636          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 637
 638
 639          if (iPWG4FastEmbedding) {
 640            AliAnalysisTaskJetCluster *taskClEmb = 0;
 641            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 642          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 643            taskClEmb->SetBackgroundCalc(kTRUE);
 644            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 645            taskClEmb->SetGhostEtamax(fTrackEtaWindow);
 646            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 647            kDefaultJetBackgroundBranch_extra = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskClEmb->GetJetOutputBranch());
 648
 649            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 650            taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 651            taskClEmb->SetBackgroundCalc(kFALSE);
 652            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 653            taskClEmb->SetGhostEtamax(fTrackEtaWindow);
 654            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 655
 656            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 657          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 658            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 659            taskClEmb->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 660            kJetSubtractBranches_extra += Form("%s ",taskClEmb->GetJetOutputBranch());
 661            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 662
 663            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 664            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 665            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 666          }
 667
 668          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 669          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 670          taskCl->SetBackgroundCalc(kTRUE);
 671          taskCl->SetCentralityCut(fCenLo,fCenUp);
 672          taskCl->SetGhostEtamax(fTrackEtaWindow);
 673          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 674          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 675        }
 676        else{
 677          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data(),0.15); // this one is for the background jets
 678          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 679          taskCl->SetBackgroundCalc(kTRUE);
 680          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 681          taskCl->SetGhostEtamax(fTrackEtaWindow);
 682          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 683          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 684
 685          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data(),0.15);
 686          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 687          taskCl->SetBackgroundCalc(kTRUE);
 688          taskCl->SetGhostEtamax(fTrackEtaWindow);
 689          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 690          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 691        }
 692
 693        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),0.15);
 694        taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 695        taskCl->SetCentralityCut(fCenLo,fCenUp);
 696        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 697
 698
 699        if(iFilterAnalysis==2){
 700          taskCl->SetJetTriggerPtCut(kJetTriggerPtCut);
 701        }
 702
 703
 704        //       taskCl->SetDebugLevel(3);
 705
 706        taskCl->SetNRandomCones(1);
 707        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 708        kDefaultJetBranch = taskCl->GetJetOutputBranch();
 709        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 710        kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip02");
 711        kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 712        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 713        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 714        kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 715
 716        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),1.0);
 717        taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 718        taskCl->SetCentralityCut(fCenLo,fCenUp);
 719        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 720        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 721        kJetSubtractBranchesCut1 += Form("%s ",taskCl->GetJetOutputBranch());
 722        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 723
 724
 725        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),2.0);
 726        taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 727        taskCl->SetCentralityCut(fCenLo,fCenUp);
 728        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 729        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 730        kJetSubtractBranchesCut2 += Form("%s ",taskCl->GetJetOutputBranch());
 731        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 732
 733
 734        // tmp track qa...
 735        /*
 736        taskCl = AddTaskJetCluster("AOD","",1<<8,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),2.0);
 737        taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 738        taskCl->SetCentralityCut(fCenLo,fCenUp);
 739        taskCl->SetFilterMask(1<<4|1<<8,1);
 740        */
 741        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data(),0.15);
 742        taskCl->SetCentralityCut(fCenLo,fCenUp);
 743        taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 744        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 745        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 746        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 747        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 748
 749        if(kUseAODMC){
 750          if(kIsPbPb){
 751            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 752            taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 753            taskCl->SetBackgroundCalc(kTRUE);
 754            taskCl->SetGhostEtamax(0.9);
 755            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 756            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 757          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 758
 759            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 760          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 761            taskCl->SetBackgroundCalc(kTRUE);
 762            taskCl->SetGhostEtamax(fTrackEtaWindow);
 763            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch(),fTrackEtaWindow);
 764            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 765            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 766          }
 767          else{
 768            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 769            taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 770            taskCl->SetBackgroundCalc(kTRUE);
 771            taskCl->SetGhostEtamax(fTrackEtaWindow);
 772            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 773          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 774
 775            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 776            taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 777            taskCl->SetBackgroundCalc(kTRUE);
 778            taskCl->SetGhostEtamax(fTrackEtaWindow);
 779            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 780            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 781            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 782            // pp background calcs...
 783          }
 784
 785          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 786          taskCl->SetGhostEtamax(fTrackEtaWindow);
 787          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 788          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC.Data());
 789          kDefaultJetBranchMC = taskCl->GetJetOutputBranch();
 790          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 791          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 792
 793          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 794          taskCl->SetEventSelection(kTRUE); // saves some computing time, not all vertices are processed
 795          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC2.Data());
 796          kDefaultJetBranchMC2 = taskCl->GetJetOutputBranch();
 797          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 798          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 799        }
 800
 801
 802        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 803      }
 804    }
 805
 806
 807    if(iJETSUBTRACT&&kJetSubtractBranches.Length()){
 808      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetBackgroundSubtract.C");
 809      AliAnalysisTaskJetBackgroundSubtract *taskSubtract = 0;
 810      if(kJetSubtractBranches.Length()){
 811
 812
 813
 814
 815        for(int iB = 1;iB<3;iB++){
 816          if(iB>2)continue;
 817          taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 818          taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());         taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 819          if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 820          //      taskSubtract->SetDebugLevel(10);
 821          TString cTmp;
 822          TObjArray *objArr = kJetSubtractBranches.Tokenize(" ");
 823          for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 824            TObjString *ostr = (TObjString*)objArr->At(iJB);
 825            cTmp = ostr->GetString().Data();
 826            cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 827            kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 828          }
 829
 830          //     taskSubtract->SetDebugLevel(3);
 831          if(iB==2){
 832            if(kJetSubtractBranches.Contains(kDefaultJetBranch.Data())&&kIsPbPb){
 833              kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 834            }
 835          }
 836
 837        }
 838
 839        //
 840        // cut1
 841        Int_t iB = 2;
 842        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut1,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut1000");
 843        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 844        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 845        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 846
 847        objArr = kJetSubtractBranchesCut1.Tokenize(" ");
 848        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 849          TObjString *ostr = (TObjString*)objArr->At(iJB);
 850          cTmp = ostr->GetString().Data();
 851          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 852          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 853        }
 854
 855        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut2,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut2000");
 856        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 857        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 858        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 859
 860        objArr = kJetSubtractBranchesCut2.Tokenize(" ");
 861        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 862          TObjString *ostr = (TObjString*)objArr->At(iJB);
 863          cTmp = ostr->GetString().Data();
 864          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 865          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 866        }
 867
 868      }
 869      if(kJetSubtractBranches_extra.Length()){
 870        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches_extra,2,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"extra");
 871        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 872        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 873        //taskSubtract->SetDebugLevel(3);
 874        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 875        if(kJetSubtractBranches_extra.Contains(kDefaultJetBranch.Data())){
 876          kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 877        }
 878      }
 879      if (!taskSubtract) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetBackgroundSubtrac cannot run for this train conditions - EXCLUDED");
 880    }
 881
 882    if (iDIJETAN) {
 883       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 884       AliAnalysisTaskDiJets *taskdijets = 0;
 885       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 886       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 887       if(iDIJETAN&2){
 888         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 889         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 890         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 891         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 892         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 893         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 894       }
 895    }
 896
 897    if(iPWG1QASym){
 898      gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
 899      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 900      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 901    }
 902
 903
 904
 905    if(iPWG4TmpSourceSara){
 906      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 907      AliAnalysisTaskEta *taskEta = AddTaskEta();
 908      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 909    }
 910
 911
 912    if(iPWG4JetServices){
 913      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 914      AliAnalysisTaskJetServices *taskjetServ = 0;
 915      taskjetServ = AddTaskJetServices("/Users/kleinb/Downloads/PWG4_JetTasksOutput_110816a_000139107_tmp.root");
 916      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 917      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 918      else taskjetServ->SetRunRange(110000,160000);
 919      taskjetServ->SetMCData(kIsMC);
 920      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 921      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 922      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 923      taskjetServ->SetTrackEtaWindow(fTrackEtaWindow);
 924      taskjetServ->SetFilterMask(kHighPtFilterMask);
 925      if(kIsPbPb)taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPbPb);
 926      else taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPP);
 927      if(kIsPbPb){
 928        if(kDeltaAODJetName.Length()>0&&kFilterAOD)taskjetServ->SetFilterAODCollisions(kTRUE);
 929        //       else if(iAODanalysis)taskjetServ->SetFilterAODCollisions(kTRUE);
 930        //       taskjetServ->SetDebugLevel(3);
 931        taskjetServ->SetZVertexCut(8.);
 932      }
 933      if(iAODanalysis){
 934        //
 935        taskjetServ->SetAODInput(kTRUE);
 936      }
 937    }
 938
 939    if(iPWG4JetSpectrum){
 940      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 941      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 942      TString bkgClusters = kDefaultJetBackgroundBranch.Data();
 943      bkgClusters.ReplaceAll(Form("%s_",AliAODJetEventBackground::StdBranchName()),"");
 944      Printf("############# Possible jet branches ###################");
 945      for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 946        TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 947        Printf("%3d: %s",iJF+1,objStr->GetString().Data());
 948      }
 949
 950      // Printf("Type q to exit");if(getchar()=='q')return;
 951      if(iPWG4JetSpectrum&1){
 952        if(kIsPbPb){
 953          for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 954            Long64_t value = kJetMapSpectrum(iJF+1);
 955            Printf("iJF: %d value: %d", iJF+1,(Int_t)value);
 956            if(value==0)continue;
 957            TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 958            TString bName1 = objStr->GetString().Data();
 959            TString bName2[3];
 960
 961            TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(iJF);
 962            TString bBkgName1("");
 963            TString bBkgName2[3];
 964
 965            Long64_t valueBkg1 = kJetBackMapSpectrum(iJF+1);
 966            if(valueBkg1>0){
 967              TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(valueBkg1-1);
 968              bBkgName1 = objStrBkg->GetString().Data();
 969            }
 970            Int_t iPartner = 0;
 971            if(value>0){
 972              Int_t iJF2 = -1;
 973              for(int i = 0;i<3;i++){
 974                iJF2 = value/kJetMapOffset[i]-1;
 975                value = value%kJetMapOffset[i];
 976                Printf("%d %d", iJF2+1,(Int_t)value);
 977                if(iJF2>=0&&iJF2<kJetListSpectrum.GetSize()){
 978                  TObjString *objStr2 = (TObjString*)kJetListSpectrum.At(iJF2);
 979                  bName2[iPartner] = objStr2->GetString().Data();
 980                  Long64_t valueBkg2 = kJetBackMapSpectrum(iJF2+1);
 981                  if(valueBkg2>0){
 982                    TObjString *objStrBkg2 = (TObjString*)kJetListSpectrum.At(valueBkg2-1);
 983                    bBkgName2[iPartner] = objStrBkg2->GetString().Data();
 984                  }
 985                  iPartner++;
 986                }
 987              }
 988            }
 989
 990
 991            // loop over all centralities
 992            for(int ic = 0;ic<5;ic++){
 993              if(ic!=0)continue;
 994              Bool_t bDone = kFALSE;
 995              for(int i = 0;i<TMath::Max(iPartner,1);i++){
 996                if(bName2[i].Length()){
 997                  taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
 998                  bDone = kTRUE;
 999                }
1000                else{
1001                  if(!bDone){
1002                    taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
1003                    bDone = kTRUE;
1004                  }
1005                  else{
1006                    continue;
1007                  }
1008                }
1009                Printf("%s/%s %s/%s",bName1.Data(),bBkgName1.Data(),bName2[i].Data(),bBkgName2[i].Data());
1010
1011                // setting all the other things...
1012                taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1013                taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1014
1015                // negative values do not fill the track histos
1016                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,-1);
1017                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,-1);
1018                if(!bName1.Contains("ANTIKT")||bName1.Contains("Cone")){
1019                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,-1);
1020                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRec,-1);
1021                }
1022
1023
1024                if(bName2[i].Length()==0){
1025                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
1026                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,0);
1027                }
1028                if(iAODanalysis==1){
1029                  taskjetSpectrum->SetAODJetInput(kTRUE);
1030                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1031                }
1032                else if (iAODanalysis==2){
1033                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1034                  taskjetSpectrum->SetAODJetInput(kFALSE);
1035                }
1036                //              taskjetSpectrum->SetDebugLevel(11);
1037                taskjetSpectrum->SetBranchBkgRec(bBkgName1.Data());
1038                taskjetSpectrum->SetBranchBkgGen(bBkgName2[i].Data());
1039              }
1040            }
1041          }
1042        }
1043        else{ // ! PbPb
1044          Int_t i = 0;
1045
1046          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1047                                                "",kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1048
1049
1050
1051          if(kDefaultJetBranchMC.Length()){
1052            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1053                                                kDefaultJetBranchMC.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1054            //      taskjetSpectrum->SetMinJetPt(10);
1055            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1056            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1057            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1058            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1059            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1060          }
1061          if(kDefaultJetBranchMC2.Length()){
1062            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1063                                                  kDefaultJetBranchMC2.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1064            //      taskjetSpectrum->SetMinJetPt(10);
1065            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1066            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1067            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1068            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1069            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1070          }
1071
1072          /*
1073          TString tmp2(kDefaultJetBranch.Data());
1074          tmp2.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),2));
1075          taskjetSpectrum = AddTaskJetSpectrum2(tmp2.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1076          //      taskjetSpectrum->SetDebugLevel(3);
1077          //        taskjetSpectrum->SetMinJetPt(10);
1078          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1079          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1080          taskjetSpectrum->SetTrackEtaWindow(0.8);
1081          taskjetSpectrum->SetJetEtaWindow(0.4);
1082
1083          // check the old subtracted vs. the new subtracted
1084          TString tmp3(kDefaultJetBranch.Data());
1085          tmp3.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),3));
1086          taskjetSpectrum = AddTaskJetSpectrum2(tmp3.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1087          //      taskjetSpectrum->SetDebugLevel(3);
1088          //        taskjetSpectrum->SetMinJetPt(10);
1089          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1090          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1091          taskjetSpectrum->SetTrackEtaWindow(0.8);
1092          taskjetSpectrum->SetJetEtaWindow(0.4);
1093          if(iAODanalysis)SetAODInput(taskjetSpectrum);
1094          */
1095        }
1096        if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
1097      }
1098    }
1099    AliAnalysisManager::SetCommonFileName("PWG4_Fragmentation.root");
1100    if(iPWG4Fragmentation){
1101      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
1102        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
1103        if(kUseAODMC){
1104
1105        }
1106        else{
1107
1108
1109          for(int ic = 1;ic < 5;ic++){
1110            // Anti-kT
1111            taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, ic);
1112            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1113            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1114
1115            // UA1
1116            taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, ic);
1117            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1118            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1119
1120          // SISCONE
1121            if(ic==1){
1122              /*
1123                taskFrag = AddTaskFragmentationFunction(1<<28,kHighPtFilterMask, ic);
1124                taskFrag = AddTaskFragmentationFunction(1<<29,kHighPtFilterMask, ic);
1125                taskFrag = AddTaskFragmentationFunction(1<<30,kHighPtFilterMask, ic);
1126              */
1127
1128
1129
1130              // Anti-kT B2 - B3
1131              if(!iAODanalysis==1){
1132                taskFrag = AddTaskFragmentationFunction(1<<26,kHighPtFilterMask, ic);
1133                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1134                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1135
1136                taskFrag = AddTaskFragmentationFunction(1<<27,kHighPtFilterMask, ic);
1137                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1138                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1139              }
1140            }
1141
1142          }
1143
1144
1145        }
1146        if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
1147    }
1148
1149    if(iPWG4JetChem){
1150      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
1151      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
1152      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
1153    }
1154
1155    if (iPWG4JetResponse) {
1156      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetResponse.C");
1157      AliAnalysisTask *taskJetResponse = 0;
1158
1159      if(iJETAN){
1160         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 0);
1161         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 1);
1162
1163         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 0);
1164         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 2);
1165      }
1166      if(iPWG4Cluster){
1167         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 0);
1168         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 1);
1169      }
1170      if (!taskJetResponse) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetResponse cannot run for this train conditions - EXCLUDED");
1171
1172    }
1173
1174    if(iPWG4JCORRAN){
1175      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
1176      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
1177      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
1178      else{
1179        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
1180      }
1181    }
1182
1183    if(iPWG4UE){
1184      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
1185      AliAnalysisTaskUE *taskUE = 0;
1186      if(iPWG4UE&1)taskUE = AddTaskUE();
1187      if(iPWG4UE&2){
1188        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1189        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
1190        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
1191        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1192        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
1193        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
1194        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1195        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
1196        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
1197      }
1198
1199      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
1200    }
1201
1202    if(iPWG4LeadingUE){
1203      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
1204      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
1205      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
1206      //     taskLeadingUE->SetFilterBit(64);
1207    }
1208
1209
1210    if(iPWG4CorrectionsUE){
1211      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
1212      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
1213      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
1214      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
1215    }
1216
1217    if(iPWG4ThreeJets){
1218      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
1219      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
1220      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
1221    }
1222    if(iPWG4QGSep){
1223      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
1224      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
1225      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
1226    }
1227
1228
1229    if(iPWG4Minijet){
1230      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
1231      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
1232      // if we ha highmult trigger add another task
1233      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
1234    }
1235
1236    AliAnalysisManager::SetCommonFileName("PWG4_HighPtQA.root");
1237    if(iPWG4PtQAMC){
1238      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
1239      AliPWG4HighPtQAMC *taskQAMC = 0;
1240      if(kUseMC){
1241        if(iPWG4PtQAMC&1){
1242          taskQAMC = AddTaskPWG4HighPtQAMCAll(kGridDataSet.Data());
1243        }
1244      }
1245      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
1246    }
1247
1248    if(iPWG4PtTrackQA){
1249      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtTrackQA.C");
1250      if(iPWG4PtTrackQA&2)AddTaskPWG4HighPtTrackQAAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1251      else AddTaskPWG4HighPtTrackQAAllReduced(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1252    }
1253
1254    if(iPWG4PtQATPC){
1255      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
1256      AliPWG4HighPtQATPConly *taskQATPC = 0;
1257      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
1258      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
1259
1260  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
1261    }
1262
1263    if(iPWG4Cosmics){
1264      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
1265
1266      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
1267      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
1268
1269      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
1270    }
1271
1272
1273    if(iPWG4PtSpectra){
1274      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
1275      AddTaskPWG4HighPtSpectraAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1276    }
1277
1278    if(iPWG4KMeans){
1279      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
1280      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
1281      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
1282    }
1283
1284    if(iPWG4PartCorr){
1285      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
1286      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
1287      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
1288      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
1289      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
1290      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
1291    }
1292
1293    if(iPWG4CaloQA){
1294      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
1295      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
1296      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
1297      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
1298    }
1299
1300    if(iPWG4JetCorr){
1301      //     using namespace JetCorrelHD;
1302      TString cdir = gSystem->WorkingDirectory();
1303      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1304      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
1305      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
1306      gSystem->ChangeDirectory(cdir);
1307      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
1308    }
1309
1310    if(iPWG4Tagged){
1311      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
1312      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
1313      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
1314      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
1315    }
1316    if (iPWG4omega3pi) {
1317      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
1318      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
1319      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
1320  for these train conditions - EXCLUDED");
1321    }
1322
1323    // PWG4 gamma conversion analysis
1324    if (iPWG4GammaConv) {
1325       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
1326       TString cdir = gSystem->WorkingDirectory();
1327       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1328       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
1329       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1330       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1331       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
1332       //      TString kGCAnalysisCutSelectionId="9003562000100310";
1333       //      TString kGCAnalysisCutSelectionId="9003562000100312";
1334       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
1335       if(!kIsMC)gcArguments += " -mc-off";
1336       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
1337       gSystem->ChangeDirectory(cdir);
1338       taskGammaConversion->SelectCollisionCandidates();
1339       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
1340    }
1341
1342    if (iPWG4CaloConv) {
1343       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
1344       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
1345       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
1346    }
1347
1348
1349
1350    //==========================================================================
1351    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
1352    // Run the analysis
1353    //
1354    if (kPluginUse) {
1355       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1356       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1357    }
1358
1359    if (mgr->InitAnalysis()) {
1360      mgr->PrintStatus();
1361      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
1362      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
1363        TString alien_workdir = gGrid->GetHomeDirectory();
1364        if (iAODanalysis) alien_workdir += "analysisAOD";
1365        else              alien_workdir += "analysisESD";
1366        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1367        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1368        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
1369               alien_workdir.Data(),gridhandler->GetGridOutputDir());
1370
1371        TString dest;
1372        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1373        if(AliAnalysisAlien::FileExists(dest.Data())){
1374          Printf("%s exist on grid removing...",dest.Data());
1375          gGrid->Rm(dest.Data());
1376        }
1377        Printf("%s copy ...",dest.Data());
1378        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1379
1380
1381        TString dest;
1382        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1383        if(AliAnalysisAlien::FileExists(dest.Data())){
1384          Printf("%s exist on grid removing...",dest.Data());
1385          gGrid->Rm(dest.Data());
1386        }
1387        Printf("%s copy ...",dest.Data());
1388        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1389
1390        dest = Form("%s/%s/%s_merge_final.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1391        if(AliAnalysisAlien::FileExists(dest.Data())){
1392          Printf("%s exist on grid removing...",dest.Data());
1393          gGrid->Rm(dest.Data());
1394        }
1395        Printf("%s copy ...",dest.Data());
1396        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1397      }
1398      AliLog::SetGlobalLogLevel(AliLog::kError);
1399      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1400        TFile * fM = TFile::Open("manager_local.root","RECREATE");
1401        mgr->Write();
1402        fM->Close();
1403      }
1404
1405      // grmpf, aliroot error handler overwrites root
1406      gErrorIgnoreLevel = kErrorIgnoreLevel;
1407      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
1408      StartAnalysis(smode, chain);
1409      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1410        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
1411          mgr->ProfileTask(i);
1412        }
1413      }
1414      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
1415        // Offline mode path files
1416        //       PatchJDL();
1417        //       PatchAnalysisMacro();
1418      }
1419
1420      if (kSaveTrain && smode=="GRID") {
1421        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1422        TString alien_workdir = gGrid->GetHomeDirectory();
1423        if (iAODanalysis) alien_workdir += "analysisAOD";
1424        else              alien_workdir += "analysisESD";
1425        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1426        //     kGridOutdir = gridhandler->GetGridOutputDir();
1427        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
1428                 alien_workdir.Data());
1429        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
1430          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1431        if (strcmp(plugin_mode, "test"))
1432          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1433      }
1434    }
1435 }
1436
1437 //______________________________________________________________________________
1438 void StartAnalysis(const char *mode, TChain *chain) {
1439 // Start analysis.
1440    Int_t imode = -1;
1441    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1442    if (!strcmp(mode, "LOCAL")) imode = 0;
1443    if (!strcmp(mode, "PROOF")) imode = 1;
1444    if (!strcmp(mode, "GRID"))  imode = 2;
1445    switch (imode) {
1446       case 0:
1447          if (!chain) {
1448             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1449             return;
1450          }
1451          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1452          return;
1453       case 1:
1454          if (!kProofDataSet.Length()) {
1455             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
1456             return;
1457          }
1458          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
1459          return;
1460       case 2:
1461          if (kPluginUse) {
1462             if (!mgr->GetGridHandler()) {
1463                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
1464                return;
1465             }
1466             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
1467          } else {
1468             if (!chain) {
1469                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1470                return;
1471             }
1472             //            mgr->StartAnalysis(mode, chain);
1473             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1474          }
1475          return;
1476    }
1477 }
1478
1479 //______________________________________________________________________________
1480 void CheckModuleFlags(const char *mode) {
1481 // Checks selected modules and insure compatibility
1482    Int_t imode = -1;
1483    if (!strcmp(mode, "LOCAL")) imode = 0;
1484    if (!strcmp(mode, "PROOF")) imode = 1;
1485    if (!strcmp(mode, "GRID"))  imode = 2;
1486
1487
1488    if (kUseCPAR) {
1489      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
1490    }
1491
1492    if (imode==1) {
1493       if (!kUsePAR) {
1494          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
1495          kUsePAR = kTRUE;
1496       }
1497    }
1498    if (imode != 2) {
1499       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
1500       kPluginUse = kFALSE;
1501    }
1502
1503
1504    if(!kIsMC){
1505      // switch off anthin related to MC
1506      kUseMC = 0;
1507      kUseAODMC = 0;
1508      kUseTR = kFALSE;
1509    }
1510
1511    // Decide if we have PbPb
1512    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
1513      Printf("Using settings for Pb+Pb");
1514      kIsPbPb = true;
1515    }
1516
1517
1518
1519    if (iAODanalysis) {
1520    // AOD analysis
1521       if (kUseMC)
1522          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
1523       if (kUseAODTags)
1524          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
1525       kUseMC = kFALSE;
1526       kUseTR = kFALSE;
1527       kUseAODTags = kFALSE;
1528       if (iESDfilter)
1529          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
1530       iESDfilter   = 0;
1531       if (iPhysicsSelection)
1532          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
1533       iPhysicsSelection   = 0;
1534       if (!iAODhandler) {
1535          if (iJETAN)
1536             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
1537          iJETAN = 0;
1538          iDIJETAN = 0;
1539       }
1540       // Disable tasks that do not work yet on AOD data
1541       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
1542       iPWG4JCORRAN = 0;
1543       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1544       iPWG4PtQAMC        = 0;
1545       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
1546       iPWG4PtQATPC        = 0;
1547       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
1548       iPWG4Cosmics        = 0;
1549
1550       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1551       iPWG4KMeans       = 0;
1552       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1553       iPWG4JetCorr = 0;
1554       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1555       iPWG4PartCorr = 0;
1556       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1557       iPWG4CaloQA = 0;
1558       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1559       iPWG4Tagged = 0;
1560       if (iPWG4omega3pi)
1561         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1562       iPWG4omega3pi = 0;
1563       if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
1564       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1565       iPWG4GammaConv = 0;
1566       iPWG1QASym     = 0;
1567       iCentralitySelection = 0;
1568    } else {
1569    // ESD analysis
1570
1571      if(kIsPbPb){
1572        iCentralitySelection = 1;
1573      }
1574
1575      if (!kUseMC){
1576        kUseTR = kFALSE;
1577
1578        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1579        kUseKinefilter = kFALSE;
1580        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1581        iPWG4PtQAMC        = 0;
1582        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1583        iPWG4CorrectionsUE = 0;
1584      }
1585      if (iJETAN){
1586        iESDfilter=1;
1587      }
1588       if (!iESDfilter){
1589         kUseKinefilter = kFALSE;
1590         kUseMuonfilter = kFALSE;
1591       }
1592       if(!iJETAN){
1593         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
1594       }
1595    }
1596    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtTrackQA||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
1597    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
1598    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1599
1600
1601    iEMCUtilLibs = iPWG4JetTasks||iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib||iJETAN;
1602    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1603
1604    if (iESDfilter) {iAODhandler=1;}
1605    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1606    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1607
1608
1609
1610 }
1611
1612 //______________________________________________________________________________
1613 Bool_t Connect(const char *mode) {
1614 // Connect <username> to the back-end system.
1615    Int_t imode = -1;
1616    if (!strcmp(mode, "LOCAL")) imode = 0;
1617    if (!strcmp(mode, "PROOF")) imode = 1;
1618    if (!strcmp(mode, "GRID"))  imode = 2;
1619    TString username = gSystem->Getenv("alien_API_USER");
1620    switch (imode) {
1621       case 0:
1622          break;
1623       case 1:
1624          if  (!username.Length()) {
1625             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1626                            1. Have called: alien-token-init <username>\n \
1627                            2. Have called: >source /tmp/gclient_env_$UID");
1628             return kFALSE;
1629          }
1630          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1631                 username.Data(), kProofCluster.Data());
1632          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1633 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1634          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1635          if (!gProof) {
1636             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1637                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1638             return kFALSE;
1639          }
1640          if(kProofClearPackages)gProof->ClearPackages();
1641
1642          if(kProofSaveToAlien){
1643            TGrid::Connect("alien://");
1644            if (gGrid) {
1645              TString homedir = gGrid->GetHomeDirectory();
1646              TString workdir = homedir + kTrainName;
1647              if (!gGrid->Cd(workdir)) {
1648                gGrid->Cd(homedir);
1649                if (gGrid->Mkdir(workdir)) {
1650                  gGrid->Cd(kTrainName);
1651                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1652                }
1653              }
1654              gGrid->Mkdir("proof_output");
1655              gGrid->Cd("proof_output");
1656              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1657            }
1658          }
1659          break;
1660       case 2:
1661          if  (!username.Length()) {
1662             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1663                            1. Have called: alien-token-init <username>\n \
1664                            2. Have called: >source /tmp/gclient_env_$UID");
1665             return kFALSE;
1666          }
1667          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1668             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1669                            "When using the AliEn plugin it is preferable to define the \
1670                            variable alien_CLOSE_SE in your environment.");
1671             return kFALSE;
1672          }
1673          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1674                 username.Data());
1675          TGrid::Connect("alien://");
1676          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1677          break;
1678       default:
1679          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1680          return kFALSE;
1681    }
1682    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1683    return kTRUE;
1684 }
1685
1686 //______________________________________________________________________________
1687 Bool_t LoadCommonLibraries(const char *mode)
1688 {
1689    if (!gSystem->Getenv("ALICE_ROOT")) {
1690       ::Error("AnalysisTrainPWG4Jets.C", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1691       return kFALSE;
1692    }
1693
1694    // Load common analysis libraries.
1695    Int_t imode = -1;
1696    if (!strcmp(mode, "LOCAL")) imode = 0;
1697    if (!strcmp(mode, "PROOF")) imode = 1;
1698    if (!strcmp(mode, "GRID"))  imode = 2;
1699    Bool_t success = kTRUE;
1700    // ROOT libraries
1701    gSystem->Load("libTree.so");
1702    gSystem->Load("libGeom.so");
1703    gSystem->Load("libVMC.so");
1704    gSystem->Load("libPhysics.so");
1705
1706    // Load framework classes. Par option ignored here.
1707    switch (imode) {
1708       case 0:
1709       case 2:
1710          if (kUseCPAR) {
1711             success &= LoadLibrary("STEERBase", mode, kTRUE);
1712             success &= LoadLibrary("ESD", mode, kTRUE);
1713             success &= LoadLibrary("AOD", mode, kTRUE);
1714             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1715             success &= LoadLibrary("OADB", mode, kTRUE);
1716             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1717             success &= LoadLibrary("ROOTFILES", mode, kTRUE);
1718             //            success &= LoadLibrary("EventMixing", mode,kTRUE);
1719             success &= LoadLibrary("CORRFW", mode, kTRUE);
1720          } else {
1721             success &= LoadLibrary("libSTEERBase.so", mode);
1722             success &= LoadLibrary("libESD.so", mode);
1723             success &= LoadLibrary("libAOD.so", mode);
1724             success &= LoadLibrary("libANALYSIS.so", mode);
1725             success &= LoadLibrary("libOADB.so", mode, kTRUE);
1726             success &= LoadLibrary("libANALYSISalice.so", mode);
1727             //            success &= LoadLibrary("libEventMixing.so", mode);
1728             success &= LoadLibrary("libCORRFW.so", mode);
1729             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1730          }
1731          break;
1732       case 1:
1733          Int_t ires = -1;
1734          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1735          if (ires < 0) {
1736             success &= LoadLibrary("STEERBase", mode);
1737             success &= LoadLibrary("ESD", mode);
1738             success &= LoadLibrary("AOD", mode);
1739             success &= LoadLibrary("ANALYSIS", mode);
1740             success &= LoadLibrary("ANALYSISalice", mode);
1741             success &= LoadLibrary("EventMixing", mode);
1742             success &= LoadLibrary("CORRFW", mode);
1743          } else {
1744             ires = gProof->EnablePackage(kProofAFversion);
1745             if (ires<0) success = kFALSE;
1746             success &= LoadLibrary("CORRFW", mode);
1747          }
1748          break;
1749       default:
1750          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1751          return kFALSE;
1752    }
1753    if (success) {
1754       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1755       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1756               gSystem->GetIncludePath());
1757    } else {
1758       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1759    }
1760
1761    return success;
1762 }
1763
1764 //______________________________________________________________________________
1765 Bool_t LoadAnalysisLibraries(const char *mode)
1766 {
1767 // Load common analysis libraries.
1768   Bool_t success = kTRUE;
1769   if (useTender) {
1770       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1771           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1772    }
1773    if (iESDfilter) {
1774      /*
1775       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1776           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1777      */
1778    }
1779    // JETAN
1780    if (iJETANLib) {
1781      // this part needs some rework in case we do not need the fastjed finders for processing
1782      if(iEMCUtilLibs){
1783        if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1784            !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1785      }
1786      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1787      if (!strcmp(mode, "PROOF")){
1788        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1789        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1790        // problem when loading siscone copiled with different gcc version??
1791        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1792        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1793      }
1794      if(!kUsePAR){
1795        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1796        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1797        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1798        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1799      }
1800      else{
1801        // par files plus FASTJET needs some extra work... need to change
1802        // the loading sequence in the auto generated .C file
1803        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1804        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1805        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1806        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1807      }
1808      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1809    }
1810    if(iPWG4JetTasks){
1811      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1812    }
1813
1814    if(iPWG1QASym){
1815      if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1816    }
1817    if(iPWG4TmpSourceSara){
1818      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1819      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1820    }
1821
1822    if (iPWG4PartCorrLibs) {
1823       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1824           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1825    }
1826    if(iPWG4JCORRAN){
1827      // PWG4 particle correlations
1828      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1829    }
1830    if (iPWG4JetCorr) {
1831      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1832    }
1833    if (iPWG4omega3pi) {
1834      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1835    }
1836    if (iPWG4GammaConvLib) {
1837       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1838    }
1839
1840    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1841    return kTRUE;
1842 }
1843
1844 //______________________________________________________________________________
1845 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1846 {
1847 // Load a module library in a given mode. Reports success.
1848    Int_t imode = -1;
1849    Int_t result;
1850    TString smodule(module);
1851    if (!strcmp(mode, "LOCAL")) imode = 0;
1852    if (!strcmp(mode, "PROOF")) imode = 1;
1853    if (!strcmp(mode, "GRID"))  imode = 2;
1854    TString mod(module);
1855    if (!mod.Length()) {
1856       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1857       return kFALSE;
1858    }
1859    // If a library is specified, just load it
1860    if (smodule.EndsWith(".so")) {
1861       mod.Remove(mod.Index(".so"));
1862       result = gSystem->Load(mod);
1863       if (result < 0) {
1864          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1865          return kFALSE;
1866       }
1867       if (rec) anaLibs += Form("%s.so ",mod.Data());
1868       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1869       return kTRUE;
1870    }
1871    // Check if the library is already loaded
1872    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1873       return kTRUE;
1874    switch (imode) {
1875       case 0:
1876       case 2:
1877          if (kUsePAR) {
1878             result = SetupPar(module);
1879             if (rec) anaPars += Form("%s.par ", module);
1880          } else {
1881             result = gSystem->Load(Form("lib%s.so", module));
1882             if (rec) anaLibs += Form("lib%s.so ", module);
1883          }
1884          break;
1885       case 1:
1886         if(!gSystem->AccessPathName(module)){
1887           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1888           gSystem->Exec(Form("rm -rf %s",module));
1889         }
1890          result = gProof->UploadPackage(module);
1891          if (result<0) {
1892             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1893             if (result<0) {
1894                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1895                return kFALSE;
1896             }
1897          }
1898          result = gProof->EnablePackage(module);
1899          break;
1900       default:
1901          return kFALSE;
1902    }
1903    if (result < 0) {
1904       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1905       return kFALSE;
1906    }
1907    return kTRUE;
1908 }
1909
1910
1911
1912 //______________________________________________________________________________
1913 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1914 {
1915 // Load a module library in a given mode. Reports success.
1916    Int_t imode = -1;
1917    Int_t result = -1;
1918    if (!strcmp(mode, "LOCAL")) imode = 0;
1919    if (!strcmp(mode, "PROOF")) imode = 1;
1920    if (!strcmp(mode, "GRID"))  imode = 2;
1921    TString ssource(source);
1922    TString basename = gSystem->BaseName(ssource.Data());
1923    if (!ssource.Length()) {
1924       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1925       return kFALSE;
1926    }
1927    // we have a source code so compile it
1928    if (ssource.EndsWith(".cxx")) {
1929      // need to copy it here other wise the path is also used on grid...
1930      ssource.Remove(ssource.Index(".cxx"));
1931      basename.Remove(basename.Index(".cxx"));
1932      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1933      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1934      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1935      // Path to code
1936      // only needed for local compilation, in grid and proof mode
1937      // the task headers are uploaded
1938      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1939      // Printf("LoadSources:: Including path %s",path.Data());
1940      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1941      Printf("LoadSources:: Loading...  path %s",basename.Data());
1942      switch (imode) {
1943      case 0:
1944        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1945        break;
1946      case 1:
1947        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1948        break;
1949      case 2:
1950        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1951        if (rec){
1952          // what we want to compile
1953          anaSources += Form("%s.cxx ",basename.Data());
1954          // what we need as input...
1955          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1956        }
1957        break;
1958      default:
1959        return kFALSE;
1960      }
1961    }
1962    if (result < 0) {
1963       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1964       return kFALSE;
1965    }
1966    return kTRUE;
1967 }
1968
1969
1970 //______________________________________________________________________________
1971 TChain *CreateChain(const char *mode, const char *plugin_mode)
1972 {
1973 // Create the input chain
1974    Int_t imode = -1;
1975    if (!strcmp(mode, "LOCAL")) imode = 0;
1976    if (!strcmp(mode, "PROOF")) imode = 1;
1977    if (!strcmp(mode, "GRID"))  imode = 2;
1978    TChain *chain = NULL;
1979    // Local chain
1980    switch (imode) {
1981       case 0:
1982          if (iAODanalysis) {
1983             if (!kLocalXMLDataset.Length()) {
1984                // Local AOD
1985                chain = new TChain("aodTree");
1986                TString line;
1987                ifstream in;
1988                in.open(kLocalDataList.Data());
1989                Int_t ic = 0;
1990                while (in.good()) {
1991                  in >> line;
1992                  if (line.Length() == 0) continue;
1993                  Printf("%d adding %s",ic,line.Data());
1994                  chain->Add(line.Data());
1995                  ic++;
1996                }
1997             } else {
1998                // Interactive AOD
1999                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
2000             }
2001          } else {
2002            if (!kLocalXMLDataset.Length()) {
2003              // Local ESD
2004              chain = new TChain("esdTree");
2005              TString line;
2006              ifstream in;
2007              in.open(kLocalDataList.Data());
2008              while (in.good()) {
2009                in >> line;
2010                if (line.Length() == 0) continue;
2011                cout << " line = " << line << endl;
2012                chain->Add(line.Data());
2013              }
2014            } else {
2015              // Interactive ESD
2016                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
2017            }
2018          }
2019          break;
2020       case 1:
2021          break;
2022       case 2:
2023          if (kPluginUse) {
2024 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
2025 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
2026          } else {
2027             TString           treeName = "esdTree";
2028             if (iAODanalysis) treeName = "aodTree";
2029             chain = CreateChainSingle("wn.xml", treeName);
2030          }
2031          break;
2032       default:
2033    }
2034    if (chain && chain->GetNtrees()) return chain;
2035    return NULL;
2036 }
2037
2038 //______________________________________________________________________________
2039 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
2040 {
2041    printf("*******************************\n");
2042    printf("*** Getting the ESD Chain   ***\n");
2043    printf("*******************************\n");
2044    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
2045
2046    if (!myCollection) {
2047       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
2048       return NULL ;
2049    }
2050
2051    TChain* chain = new TChain(treeName);
2052    myCollection->Reset() ;
2053    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
2054    chain->ls();
2055    return chain;
2056 }
2057
2058 //______________________________________________________________________________
2059 Int_t SetupPar(char* pararchivename)
2060 {
2061    if (!pararchivename || !strlen(pararchivename)) return -1;
2062    char processline[1024];
2063    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
2064       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
2065          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
2066         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
2067                   Form("%s.par",pararchivename));
2068       } else {
2069          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
2070          return -1;
2071       }
2072    }
2073    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
2074    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
2075
2076    TString ocwd = gSystem->WorkingDirectory();
2077    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
2078
2079    // check for BUILD.sh and execute
2080    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
2081       printf("*******************************\n");
2082       printf("*** Building PAR archive    ***\n");
2083       printf("*******************************\n");
2084       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
2085          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
2086          return -1;
2087       }
2088    }
2089
2090         // check for SETUP.C and execute
2091         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
2092             printf("*******************************\n");
2093             printf("*** Setup PAR archive       ***\n");
2094             printf("*******************************\n");
2095             gROOT->Macro("PROOF-INF/SETUP.C");
2096         }
2097         if (!gSystem->ChangeDirectory(ocwd.Data())){
2098           Error("Change back directory",Form("Cannot change to %s",ocwd.Data()));
2099           return -1;
2100         }
2101    return 0;
2102 }
2103
2104 //______________________________________________________________________________
2105 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
2106 {
2107 // Check if user has a valid token, otherwise make one. This has limitations.
2108 // One can always follow the standard procedure of calling alien-token-init then
2109 //   source /tmp/gclient_env_$UID in the current shell.
2110 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
2111    AliAnalysisAlien *plugin = new AliAnalysisAlien();
2112 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
2113    plugin->SetRunMode(plugin_mode);
2114    if (kPluginUseProductionMode) plugin->SetProductionMode();
2115    plugin->SetJobTag(kJobTag);
2116    plugin->SetNtestFiles(1);
2117 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
2118 // Set versions of used packages
2119    plugin->SetAPIVersion("V1.1x");
2120    //   plugin->SetAPIVersion("V1.0x");
2121 //   plugin->SetAPIVersion("V2.4");
2122    plugin->SetROOTVersion(kPluginRootVersion);
2123    plugin->SetAliROOTVersion(kPluginAliRootVersion);
2124 // Declare input data to be processed.
2125 // Method 1: Create automatically XML collections using alien 'find' command.
2126 // Define production directory LFN
2127    plugin->SetGridDataDir(kGridDatadir.Data());
2128 // Set data search pattern
2129    if (iAODanalysis) plugin->SetDataPattern(Form(" %s/*/*AliAOD.root",kGridPassPattern.Data()));
2130    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
2131 // ...then add run numbers to be considered
2132 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
2133    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
2134      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
2135      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
2136    }
2137
2138    if(kGridLocalRunList.Length()>0){
2139      ifstream in1;
2140      in1.open(kGridLocalRunList.Data());
2141      int iRun;
2142      int icount = 0;
2143      Int_t nRun = 0;
2144      // just use run numbers, negatives will be excluded
2145      while(in1>>iRun){
2146        if(iRun>=0){
2147          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
2148            Printf("AnalysisTrainPWG4Jets Adding run number from File %d: %s",nRun,Form(kGridRunPattern.Data(),iRun));
2149            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
2150
2151          }
2152          else{
2153            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2154          }
2155          nRun++;
2156        }
2157        else{
2158          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2159        }
2160      }
2161    }
2162 // Method 2: Declare existing data files (raw collections, xml collections, root file)
2163 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
2164 // XML collections added via this method can be combined with the first method if
2165 // the content is compatible (using or not tags)
2166 //   plugin->AddDataFile("tag.xml");
2167 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
2168 // Define alien work directory where all files will be copied. Relative to alien $HOME.
2169    TString alien_workdir = "";
2170
2171    if (iAODanalysis)  alien_workdir += "analysisAOD";
2172    else               alien_workdir += "analysisESD";
2173        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
2174    plugin->SetGridWorkingDir(alien_workdir.Data());
2175
2176    // Declare alien output directory. Relative to working directory.
2177    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2178    plugin->SetGridOutputDir(kGridOutdir);
2179
2180    // Add external packages
2181    plugin->AddExternalPackage("boost::v1_43_0");
2182    plugin->AddExternalPackage("cgal::v3.6");
2183    plugin->AddExternalPackage("fastjet::v2.4.2");
2184
2185
2186    // set extra libs before par file compilation
2187    anaLibs += kGridExtraFiles;
2188    anaLibs     = anaLibs.Strip();
2189    Printf("anaLibs %s",anaLibs.Data());
2190    Printf("anaLibsExtra %s",anaLibsExtra.Data());
2191
2192    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
2193    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
2194
2195    TString ana_sources = "";
2196    TString ana_add = "";
2197    if (kUsePAR && anaPars.Length()) {
2198       printf("%s\n", anaPars.Data());
2199       TObjArray *arr;
2200       TObjString *objstr;
2201       arr = anaPars.Tokenize(" ");
2202       TIter next(arr);
2203       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
2204       delete arr;
2205    }
2206
2207 // Declare the analysis source files names separated by blancs. To be compiled runtime
2208 // using ACLiC on the worker nodes.
2209    ana_sources = anaSources.Strip();
2210 // Declare all libraries (other than the default ones for the framework. These will be
2211 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
2212
2213    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
2214    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
2215    // Declare the output file names separated by blancs.
2216    // (can be like: file.root or file.root@ALICE::Niham::File)
2217    plugin->SetMergeExcludes(kGridMergeExclude);
2218    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
2219    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
2220    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
2221    // Use fastread option
2222    plugin->SetFastReadOption(kPluginFastReadOption);
2223    // UseOverwrite mode
2224    plugin->SetOverwriteMode(kPluginOverwriteMode);
2225    // Optionally define the files to be archived.
2226    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
2227    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
2228
2229    // Put default output files to archive
2230    TString listhists = "";
2231    TString listaods  = "";
2232    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2233    TIter next(mgr->GetOutputs());
2234    AliAnalysisDataContainer *output;
2235    while ((output=(AliAnalysisDataContainer*)next())) {
2236       const char *filename = output->GetFileName();
2237       if (!(strcmp(filename, "default"))) {
2238         if (!mgr->GetOutputEventHandler()) continue;
2239          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
2240          if (listaods.Length()) listaods += " ";
2241          listaods += filename;
2242       } else {
2243         if(!listhists.Contains(filename)){
2244           if (listhists.Length()) listhists += " ";
2245           listhists += filename;
2246         }
2247       }
2248    }
2249
2250    if (mgr->GetExtraFiles().Length()) {
2251      if (listaods.Length()) listaods += " ";
2252      listaods += mgr->GetExtraFiles();
2253    }
2254
2255    // if we do not fill the aod we do not need to store it
2256    //   kGridMergeExclude = listaods;
2257
2258    if(kSaveAOD>=0){
2259      TString outputFiles =  "";
2260      outputFiles += mgr->GetExtraFiles();
2261      if (listhists.Length()) outputFiles += " ";
2262      outputFiles += listhists;
2263      plugin->SetDefaultOutputs(kFALSE);
2264      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2265      // remove
2266      // no harm done when we try to remove something that is not there :)
2267      if(!(kSaveAOD&(1<<0))){
2268        outputFiles.ReplaceAll("AliAOD.root ","");
2269        listaods.ReplaceAll("AliAOD.root ","");
2270      }
2271      if(!(kSaveAOD&(1<<1))){
2272        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
2273        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
2274
2275      }
2276      if(!(kSaveAOD&(1<<2))){
2277        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2278        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2279      }
2280      if(!(kSaveAOD&(1<<3))){
2281        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2282        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2283      }
2284
2285      //
2286      plugin->SetDefaultOutputs(kFALSE);
2287      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2288      plugin->SetOutputFiles(outputFiles.Data());
2289    }
2290
2291    TString outputArchive;
2292    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
2293    listaods.ReplaceAll(" ", ",");
2294    listhists.ReplaceAll(" ", ",");
2295    if (listhists.Length()){
2296      outputArchive += " ";
2297      outputArchive += "root_archive.zip:";
2298      outputArchive += listhists;
2299      if (listaods.Length()){
2300        outputArchive += ",";
2301        outputArchive += listaods;
2302      }
2303      outputArchive += Form("@%s", kGridOutputStorages.Data());
2304    }
2305    else{
2306
2307      if (listaods.Length()){
2308        // we have only aod'ish output
2309        outputArchive += " ";
2310        outputArchive += "root_archive.zip:";
2311        outputArchive += listaods;
2312        outputArchive += Form("@%s", kGridOutputStorages.Data());
2313      }
2314      else{
2315        // no other outputs than std..
2316       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
2317      }
2318    }
2319
2320    plugin->SetDefaultOutputs(kFALSE);
2321    plugin->SetOutputArchive(outputArchive);
2322
2323
2324    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
2325    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
2326    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
2327    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
2328    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
2329    //   plugin->SetMaxInitFailed(5);
2330    // Optionally resubmit threshold.
2331    // plugin->SetMasterResubmitThreshold(90);
2332    // Optionally set time to live (default 30000 sec)
2333    plugin->SetTTL(80000); // 22h...
2334    // Optionally set input format (default xml-single)
2335    plugin->SetInputFormat("xml-single");
2336    // Optionally modify the name of the generated JDL (default analysis.jdl)
2337    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
2338    // Optionally modify the executable name (default analysis.sh)
2339    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
2340    // Optionally modify job price (default 1)
2341    plugin->SetPrice(1);
2342    // Optionally modify split mode (default 'se')
2343    plugin->SetSplitMode("se");
2344    return plugin;
2345 }
2346
2347 //______________________________________________________________________________
2348 void WriteConfig()
2349 {
2350 // Write train configuration in a file. The file name has the format:
2351 // train_[trainName]_ddMonthyyyy_time.C
2352    if (kUseDate) {
2353       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
2354       ifstream fdate("date.tmp");
2355       if (!fdate.is_open()) {
2356          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
2357          return;
2358       }
2359       const char date[64];
2360       fdate.getline(date,64);
2361       fdate.close();
2362       gSystem->Exec("rm date.tmp");
2363       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
2364    } else {
2365       kTrainName = Form("train_%s", kTrainName.Data());
2366    }
2367    TString cdir = gSystem->WorkingDirectory();
2368    gSystem->MakeDirectory(kTrainName);
2369    gSystem->ChangeDirectory(kTrainName);
2370    ofstream out;
2371    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
2372    if (out.bad()) {
2373       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
2374       return;
2375    }
2376    out << "{" << endl;
2377    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
2378    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
2379    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
2380    if (kProofUseAFPAR)
2381       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
2382    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
2383    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
2384    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
2385    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
2386    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
2387    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
2388    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
2389    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2390    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
2391    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
2392    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
2393    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
2394    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
2395    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
2396    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
2397    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
2398    out << "   kUseMC           = " << kUseMC << ";" << endl;
2399    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
2400    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
2401    out << "   kUseTR           = " << kUseTR << ";" << endl;
2402    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
2403    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
2404    out << "   // Analysis modules" << endl;
2405    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
2406    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
2407    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
2408    out << "   iJETAN          = " << iJETAN << ";" << endl;
2409    out << "// Configuration fot the wagons" << endl;
2410    out << "}" << endl;
2411    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
2412    gSystem->ChangeDirectory(cdir);
2413 }
2414
2415 //______________________________________________________________________________
2416 Bool_t LoadConfig(const char *filename)
2417 {
2418 // Read train configuration from file
2419    if (gSystem->AccessPathName(filename)) {
2420       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
2421       return kFALSE;
2422    }
2423    gROOT->ProcessLine(Form(".x %s", filename));
2424    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
2425    return kTRUE;
2426 }
2427
2428 Bool_t PatchJDL(){
2429   Printf(">>> Patching JDL");
2430   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2431   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
2432   TGridJDL *jdl = gridHandler->GetGridJDL();
2433   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
2434   gridHandler->WriteJDL(kFALSE);
2435   Printf("<<<  Patching JDL");
2436   return kTRUE;
2437 }
2438
2439 Bool_t PatchAnalysisMacro(){
2440   Printf(">>> Patching AnalysisMacro");
2441   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
2442
2443   ifstream in1;
2444   in1.open(Form("%s.C_tmp", kTrainName.Data()));
2445   char cLine[250];
2446   TString st;
2447   while(in1.getline(cLine,250)){
2448     st += cLine;
2449     st += "\n";
2450   }
2451   Int_t index= -1;
2452   index = st.Index("gSystem->Load(\"libPhysics\");");
2453   index += strlen("gSystem->Load(\"libPhysics\");");
2454   /*
2455     TObjArray *arr;
2456     TObjString *objstr;
2457     arr = anaLibs.Tokenize(" ");
2458     TIter next(arr);
2459
2460     add += "\n\n // added by CKB \n";
2461     while ((objstr=(TObjString*)next())){
2462       if(objstr->GetString().Contains("PWG3"))continue;
2463       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
2464     }
2465     delete arr;
2466     */
2467     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
2468   TString add = "";
2469
2470   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2471   add += "\n\n // added by CKB \n";
2472   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
2473   add += "\n gSystem->AddIncludePath(\"./\"); \n";
2474   add += "\n gSystem->SetFPEMask(); \n";
2475
2476
2477   if(gGrid&&kPluginAliRootVersion.Length()==0){
2478     /*
2479     add += "\n // Dirty hack for TRD reference data \n";
2480     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2481     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2482     add += "\"); \n";
2483     */
2484   }
2485
2486   add += "// BKC \n\n";
2487   st.Insert(index,add.Data());
2488
2489   if(kUseDebug){
2490     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2491   }
2492
2493   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2494     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
2495     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2496     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2497   }
2498
2499   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
2500     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
2501     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2502     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
2503   }
2504
2505   ofstream out;
2506   out.open(Form("%s.C", kTrainName.Data()));
2507   if (out.bad()) {
2508     return kFALSE;
2509   }
2510   out << st << endl;
2511   Printf("<<< Patching AnalysisMacro");
2512
2513
2514
2515
2516
2517   Printf(">>> Patching Merge Macro");
2518   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
2519
2520   ifstream in2;
2521   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
2522   TString st2;
2523   while(in2.getline(cLine,250)){
2524     st2 += cLine;
2525     st2 += "\n";
2526   }
2527   index = st2.Index("gSystem->Load(\"libPhysics\");");
2528   index += strlen("gSystem->Load(\"libPhysics\");");
2529   TString add2 = "";
2530   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
2531   if(gGrid&&kPluginAliRootVersion.Length()==0){
2532     /*
2533     add2 += "\n // Dirty hack for TRD reference data \n";
2534     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2535     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2536     add2 += "\"); \n";
2537     */
2538   }
2539   add2 += "// BKC \n\n";
2540   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2541   st2.Insert(index,add.Data());
2542
2543
2544   if(kUseDebug){
2545     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2546   }
2547
2548   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2549     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
2550     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2551     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2552   }
2553
2554   // do not exclude the extra files from merign, this is done explicitly in this train script
2555   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2556   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2557   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
2558
2559
2560   ofstream out2;
2561   out2.open(Form("%s_merge.C", kTrainName.Data()));
2562   if (out2.bad()) {
2563     return kFALSE;
2564   }
2565   out2 << st2 << endl;
2566   Printf("<<< Patching Merging Macro");
2567
2568
2569
2570   return kTRUE;
2571
2572 }