PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kTRUE;  // switch of AOD filling for on the fly analysis
  35 Bool_t      kFilterAOD = kTRUE;
  36 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  37 //== general input and output variables
  38
  39 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  40 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  41 Int_t       iCentralitySelection  = 0;      // Use the centrality
  42 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  43 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  44 UInt_t      iPhysicsSelectionFlag = 1; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  45 Bool_t      useTender           = kFALSE; // use tender wagon
  46 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  47 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  48 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  49 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  50
  51
  52 //== general process variables
  53
  54 // ### Other flags to steer the analysis
  55 //==============================================================================
  56 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  57 Bool_t      kUseDate            = kFALSE; // use date in train name
  58 Bool_t      kUseDebug           = kTRUE; // activate debugging
  59 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  60 // From TError.h:
  61 // const Int_t kUnset    =  -1;
  62 // const Int_t kPrint    =   0;
  63 // const Int_t kInfo     =   1000;
  64 // const Int_t kWarning  =   2000;
  65 // const Int_t kError    =   3000;
  66 // const Int_t kBreak    =   4000;
  67 // const Int_t kSysError =   5000;
  68 // const Int_t kFatal    =   6000;
  69 Int_t         kUseSysInfo         = 0; // activate debugging
  70 Long64_t    kNumberOfEvents     = 1234567890; // number of events to process from the chain
  71 Bool_t      kUseMC              = kTRUE;  // use MC info
  72 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  73 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  74 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  75 Bool_t      kUseTR              = kFALSE;  // use track references
  76 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  77 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  78 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  79
  80
  81 // ### Analysis modules to be included. Some may not be yet fully implemented.
  82 //==============================================================================
  83 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  84 Int_t       iJETSUBTRACT        = 1;      // Jet background subtration
  85 TString     kDefaultJetBranch     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  86 TString     kDefaultJetBackgroundBranch            = "";      // is currently set when filled (jet clsuters
  87 TString     kDefaultJetBackgroundBranchCut1        = "";      // is currently set when filled (jet clsuters
  88 TString     kDefaultJetBackgroundBranch_extra     = "";      // is currently set when filled (jet clsuters)
  89 TString     kJetSubtractBranches     = "";      // is currently set when filled (jet clsuters
  90 TString     kJetSubtractBranchesCut1     = "";      // is currently set when filled (jet clsuters
  91 TString     kJetSubtractBranches_extra     = "";      // is currently set when filled (jet clsuters
  92
  93 TString     kDefaultJetBranchMC     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  94 TString     kDefaultJetBackgroundBranchMC     = "";      // is currently set when filled (jet clsuters
  95 TString     kDefaultJetBranchMC2     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  96 TString     kDefaultJetBackgroundBranchMC2     = "";      // is currently set when filled (jet clsuters
  97 TString     kJetSubtractMask1 = "B0";
  98 TString     kJetSubtractMask2 = "B%d";
  99 Int_t       iDIJETAN           = 1;
 100 Int_t       iJETANLib          = 1;
 101 Int_t       iPWG1QASym         = 0;      // Eva's QA task compiled on the fly...
 102 Int_t       iPWG4FastEmbedding = 0;      // Generate non-standard AOD for embedding
 103 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
 104 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
 105 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
 106 Int_t       iPWG4JetResponse   = 0;      // jet response matrix
 107 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
 108 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
 109 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
 110 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
 111 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
 112 Int_t       iPWG4Fragmentation = 1;      // Official Fragmentation
 113 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
 114 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
 115 Int_t       iPWG4PtTrackQA     = 0;      // Marta's QA tasks
 116 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
 117 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
 118 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
 119 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
 120 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
 121 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 122 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 123 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 124 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 125 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 126 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 127 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 128 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 129 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 130 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 131 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 132 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 133 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 134 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 135 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 136 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 137 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
 138 TString     kFastEmbeddingAOD  = "emb/AliAOD.root";
 139 TString     kFastEmbAODList    = "";
 140
 141 //==============================================================================
 142 // ### PROOF Steering varibales
 143 //==============================================================================
 144 //== proof setup variables
 145 TString     kProofCluster      = "alicecaf.cern.ch";
 146 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 147 TString     kProofAFversion          = "AF-v4-17";
 148 //== proof input and output variables
 149 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 150 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 151 TString     kProofOutdir       = "";
 152 Bool_t      kProofClearPackages = kFALSE;
 153 Int_t       kProofEvents = 10000;
 154 Int_t       kProofOffset = 0;
 155 //== proof process variables
 156
 157
 158 //==============================================================================
 159 // ### Grid plugin Steering varibiables
 160 //==============================================================================
 161 //== grid plugin setup variables
 162 Bool_t      kPluginUse         = kTRUE;   // do not change
 163 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 164 TString     kPluginRootVersion       = "v5-27-06b";  // *CHANGE ME IF MORE RECENT IN GRID*
 165 TString     kPluginAliRootVersion    = "v4-19-15-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 166 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 167 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 168 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 169 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 170 // TString kPluginExecutableCommand = "root -b -q";
 171 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 172
 173 // == grid plugin input and output variables
 174 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 175 Int_t         kGridMaxRunsFromList = 999999999;
 176 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 177 TString     kGridLocalRunList = "";
 178 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 179 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 180 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 181 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 182 TString     kGridPassPattern       = "";
 183 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 184 Int_t         kGridMaxMergeFiles      = 25; // Number of files merged in a chunk grid run range
 185 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 186 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 187 // == grid process variables
 188 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 189 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 190
 191 //==============================================================================
 192 // ### Local Steering variables
 193 //==============================================================================
 194 //== local setup variables
 195 //== local input and output variables
 196 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 197 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 198 // == local process variables
 199
 200 TString kPluginMode = "";
 201 TString kAnalysisMode = "";
 202
 203
 204 // Temporaries.
 205 TString anaPars = "";
 206 TString anaLibs = "";
 207 TString anaLibsExtra = "";
 208 TString anaSources = "";
 209 // Function signatures
 210 class AliAnalysisAlien;
 211
 212 //______________________________________________________________________________
 213 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 214                            const char *plugin_mode="",
 215                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 216 {
 217 // Main analysis train macro. If a configuration file is provided, all parameters
 218 // are taken from there but may be altered by CheckModuleFlags.
 219
 220   // these flag may be needed by the config file
 221   kPluginMode   = plugin_mode;
 222   kAnalysisMode = analysis_mode;
 223
 224   if (strlen(config_file) && !LoadConfig(config_file)) return;
 225   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 226   if(iOffset)kGridOffsetRunFromList = iOffset;
 227   if(iOffset)kProofOffset = iOffset;
 228
 229
 230    TString smode(analysis_mode);
 231    smode.ToUpper();
 232    if (kSaveTrain)WriteConfig();
 233    // Check compatibility of selected modules
 234    CheckModuleFlags(smode);
 235    //     gROOT->ProcessLine(".trace");
 236
 237    printf("==================================================================\n");
 238    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 239    printf("==================================================================\n");
 240                               printf("=  Configuring analysis train for:                               =\n");
 241    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 242    else                     printf("=  ESD analysis                                                  =\n");
 243    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 244    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 245    if (useTender)   printf("=  Using tender                                                =\n");
 246    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 247    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 248    printf("==================================================================\n");
 249
 250    char *printMask = ":: %20s  %10d\n";
 251    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 252    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 253    printf(printMask,"MC truth", (UInt_t)kUseMC);
 254    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 255    printf(printMask,"track refs", (UInt_t)kUseTR);
 256    printf(printMask,"tags", (UInt_t)kUseESDTags);
 257    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 258    printf(printMask,"debugging", (UInt_t)kUseDebug);
 259    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 260    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 261    printf(printMask,"JETAN subtract", (UInt_t)iJETSUBTRACT);
 262    printf(printMask,"PWG1 QA sym", iPWG1QASym);
 263    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 264    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 265    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 266    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 267    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 268    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 269    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 270    printf(printMask,"PWG4 UE",iPWG4UE);
 271    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 272    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 273    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 274    printf(printMask,"PWG4 Pt QA track",iPWG4PtTrackQA);
 275    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 276    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 277    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 278    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 279    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 280    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 281    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 282    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 283    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 284    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 285    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 286    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 287    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 288    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 289    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 290    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 291    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 292
 293    //==========================================================================
 294    // Connect to back-end system
 295    if (!Connect(smode)) {
 296       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 297       return;
 298    }
 299
 300    // Load common libraries and set include path
 301    if (!LoadCommonLibraries(smode)) {
 302       ::Error("AnalysisTrain", "Could not load common libraries");
 303       return;
 304    }
 305
 306
 307
 308    // Make the analysis manager and connect event handlers
 309    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 310    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 311    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 312    mgr->SetNSysInfo(0);
 313    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 314    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 315    mgr->SetSkipTerminate(kSkipTerminate);
 316
 317    // Load analysis specific libraries
 318    if (!LoadAnalysisLibraries(smode)) {
 319       ::Error("AnalysisTrain", "Could not load analysis libraries");
 320      return;
 321    }
 322
 323    // Create input handler (input container created automatically)
 324    if (iAODanalysis) {
 325    // AOD input handler
 326       AliAODInputHandler *aodH = new AliAODInputHandler();
 327       mgr->SetInputEventHandler(aodH);
 328       //      if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
 329       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 330    } else {
 331    // ESD input handler
 332       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 333       if (kUseESDTags) esdHandler->SetReadTags();
 334       esdHandler->SetReadFriends(kFALSE);
 335       mgr->SetInputEventHandler(esdHandler);
 336       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 337
 338    }
 339
 340    // Monte Carlo handler
 341    if (kUseMC && !iAODanalysis) {
 342       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 343       mgr->SetMCtruthEventHandler(mcHandler);
 344       mcHandler->SetReadTR(kUseTR);
 345    }
 346    // AOD output container, created automatically when setting an AOD handler
 347    if (iAODhandler) {
 348       // AOD output handler
 349       AliAODHandler* aodHandler   = new AliAODHandler();
 350       aodHandler->SetOutputFileName("AliAOD.root");
 351       aodHandler->SetFillAODforRun(kFillAOD);
 352       //
 353       mgr->SetOutputEventHandler(aodHandler);
 354       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 355       cout_aod->SetSpecialOutput();
 356    }
 357    // Debugging if needed
 358
 359    if (kUseDebug){
 360      mgr->SetDebugLevel(3);
 361    }
 362    if(kUseSysInfo>0){
 363      mgr->RegisterExtraFile("syswatch.root");
 364      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 365      kGridMergeExclude += "syswatch.root";
 366    }
 367    else{
 368      AliLog::SetGlobalLogLevel(AliLog::kError);
 369    }
 370
 371
 372    //==========================================================================
 373    // Create the chain. In this example it is created only from ALIEN files but
 374    // can be done to work in batch or grid mode as well.
 375    TChain *chain = CreateChain(smode, plugin_mode);
 376
 377    //==========================================================================
 378    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 379    // in the current workdir, but in AliEn they will be in the file catalog,
 380    // mapped from AliRoot and pecified in the jdl input list.
 381
 382    // For now connection to top input container and common AOD output container
 383    // is done in this macro, but in future these containers will be connected
 384    // from each task configuration macro.
 385
 386    //
 387    // Tender and supplies. Needs to be called for every event.
 388    //
 389
 390    if (useTender) {
 391       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 392       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 393       //      tender->SelectCollisionCandidates();
 394       tender->SetDebugLevel(2);
 395    }
 396
 397
 398    Float_t fTrackEtaWindow = 0.9;
 399    Float_t fJetEtaWindow   = 0.5;
 400
 401    /*
 402    if(kIsPbPb){// for pass1
 403      Float_t fTrackEtaWindow = 0.8;
 404      Float_t fJetEtaWindow   = 0.4;
 405    }
 406    */
 407
 408    if(iPhysicsSelection && !iAODanalysis){
 409      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 410      Int_t iTriggerHIC = 0;
 411      Bool_t rejectBkg = true;
 412      if(kIsPbPb){
 413        iTriggerHIC = 2;
 414        rejectBkg = false; // for the moment...
 415      }
 416      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
 417      iPhysicsSelectionFlag = AliVEvent::kMB;
 418      mgr->RegisterExtraFile("EventStat_temp.root");
 419      mgr->AddStatisticsTask();
 420    }
 421
 422    if(iCentralitySelection){
 423
 424      // has to run before AOD filter
 425      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
 426      //     const char* file1="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161.root";
 427      //     const char* file2="$ALICE_ROOT/ANALYSIS/macros/AliCentralityByFunction_137161.root";
 428      AliCentralitySelectionTask *taskC = AddTaskCentrality();
 429       if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 430    }
 431
 432    if (iESDfilter && !iAODanalysis) {
 433       //  ESD filter task configuration.
 434       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 435       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
 436       taskesdfilter->SetEnableFillAOD(!kFilterAOD);
 437       taskesdfilter->DisableV0s();
 438       taskesdfilter->DisableCascades();
 439       taskesdfilter->DisableKinks();
 440       taskesdfilter->DisablePmdClusters();
 441       taskesdfilter->DisableCaloClusters();
 442       taskesdfilter->DisableCells();
 443
 444       if(kIsMC){
 445         mgr->RegisterExtraFile("pyxsec_hists.root");
 446         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 447         kGridMergeExclude += "pyxsec_hists.root";
 448
 449       }
 450    }
 451
 452    // AOD tags
 453    if (kUseAODTags) {
 454       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 455       mgr->AddTask(tagTask);
 456       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 457                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 458       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 459       mgr->ConnectOutput(tagTask, 1, coutTags);
 460    }
 461
 462    if (iPWG4FastEmbedding) {
 463      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFastEmbedding.C");
 464      AliAnalysisTaskFastEmbedding *taskEmbedding = 0;
 465      if(kFastEmbAODList.Length()) taskEmbedding = AddTaskFastEmbedding(kFastEmbAODList, 1);
 466      else                         taskEmbedding = AddTaskFastEmbedding(kFastEmbeddingAOD, 0);
 467      taskEmbedding->SetJetBranch("jetsAOD_UA104_B0_Filter00256_Cut01000");
 468      // taskEmbedding->SetEvtSelecMode(AliAnalysisTaskFastEmbedding::kEventsAll);
 469      // taskEmbedding->SetDebugLevel(10);
 470    }
 471
 472     // Jet analysis
 473    if (iJETAN) {
 474       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 475       AliAnalysisTaskJets *taskjets = 0;
 476       if(iJETAN&1){
 477         /*
 478         taskjets = AddTaskJets(kHighPtFilterMask);
 479         taskjets->SetName("StandardJets");
 480         taskjets->SetNonStdBranch("");
 481         */
 482       }
 483       if(iJETAN&2){
 484         // Set only few jet finders  backgroudn subtraction w an wo
 485
 486         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 487         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 488
 489         // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 490         if(kIsPbPb){
 491           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 492           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 493         }
 494
 495         TString cTmp("");
 496
 497         // SICONE
 498         taskjets = AddTaskJets("AOD","SISCONE",0.4,kHighPtFilterMask,0.15,0); //no background subtraction to be done later....
 499         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 500         cTmp = taskjets->GetNonStdBranch();
 501         if(cTmp.Length()>0)kJetSubtractBranches += Form("%s ",cTmp.Data());
 502
 503         if(kUseAODMC){
 504           // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 505           if(kIsPbPb){
 506             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 507             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 508           }
 509           else{
 510             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 511             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 512           }
 513         }
 514         if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 515       }
 516       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 517    }
 518
 519
 520    if (iPWG4FastEmbedding && iJETAN) {
 521      AliAnalysisTaskJets *taskEmbJets = AddTaskJets("AODextra", "FASTJET", 0.4, kHighPtFilterMask);
 522      taskEmbJets->ReadAODFromOutput();
 523      kJetSubtractBranches_extra += Form("%s ", taskEmbJets->GetNonStdBranch());
 524
 525      taskEmbJets = AddTaskJets("AODextraonly", "FASTJET", 0.4, kHighPtFilterMask);
 526      taskEmbJets->ReadAODFromOutput();
 527
 528      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,0);
 529      taskEmbJets->ReadAODFromOutput();
 530      taskEmbJets = AddTaskJets("AODextraonly", "UA1", 0.4, kHighPtFilterMask,1.,0);
 531      taskEmbJets->ReadAODFromOutput();
 532      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,2);
 533      taskEmbJets->ReadAODFromOutput();
 534    }
 535
 536    if(iPWG4Cluster){
 537      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 538      AliAnalysisTaskJetCluster *taskCl = 0;
 539      Float_t fCenUp = 0;
 540      Float_t fCenLo = 0;
 541      if(kIsPbPb&&!kIsMC){
 542        fCenLo = 0;
 543        fCenUp = 80;
 544      }
 545      if(iPWG4Cluster&1){
 546
 547        if(kIsPbPb){
 548          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,0); // this one is for the background and random jets, random cones with no skip
 549          taskCl->SetBackgroundCalc(kTRUE);
 550          taskCl->SetNRandomCones(10);
 551          taskCl->SetDebugLevel(11);
 552          taskCl->SetCentralityCut(fCenLo,fCenUp);
 553          taskCl->SetGhostEtamax(fTrackEtaWindow);
 554          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 555
 556
 557          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,0); // this one is for the background and random jets, random cones with no skip
 558          taskCl->SetNRandomCones(10);
 559          taskCl->SetBackgroundCalc(kTRUE);
 560          taskCl->SetCentralityCut(fCenLo,fCenUp);
 561          taskCl->SetGhostEtamax(fTrackEtaWindow);
 562          kDefaultJetBackgroundBranchCut1 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 563
 564          if (iPWG4FastEmbedding) {
 565            AliAnalysisTaskJetCluster *taskClEmb = 0;
 566            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 567            taskClEmb->SetBackgroundCalc(kTRUE);
 568            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 569            taskClEmb->SetGhostEtamax(fTrackEtaWindow);
 570            kDefaultJetBackgroundBranch_extra = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskClEmb->GetJetOutputBranch());
 571
 572            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 573            taskClEmb->SetBackgroundCalc(kFALSE);
 574            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 575            taskClEmb->SetGhostEtamax(fTrackEtaWindow);
 576
 577            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 578            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 579            taskClEmb->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 580            kJetSubtractBranches_extra += Form("%s ",taskClEmb->GetJetOutputBranch());
 581
 582            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 583            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 584          }
 585
 586          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 587          taskCl->SetBackgroundCalc(kTRUE);
 588          taskCl->SetCentralityCut(fCenLo,fCenUp);
 589          taskCl->SetGhostEtamax(fTrackEtaWindow);
 590        }
 591        else{
 592          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data(),0.15); // this one is for the background jets
 593          taskCl->SetBackgroundCalc(kTRUE);
 594          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 595          taskCl->SetGhostEtamax(fTrackEtaWindow);
 596
 597          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data(),0.15);
 598          taskCl->SetBackgroundCalc(kTRUE);
 599          taskCl->SetGhostEtamax(fTrackEtaWindow);
 600        }
 601
 602        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),0.15);
 603        taskCl->SetCentralityCut(fCenLo,fCenUp);
 604        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 605        taskCl->SetNRandomCones(10);
 606        kDefaultJetBranch = taskCl->GetJetOutputBranch();
 607        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 608
 609        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),1.0);
 610        taskCl->SetCentralityCut(fCenLo,fCenUp);
 611        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 612        kJetSubtractBranchesCut1 += Form("%s ",taskCl->GetJetOutputBranch());
 613
 614        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data(),0.15);
 615        taskCl->SetCentralityCut(fCenLo,fCenUp);
 616        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 617        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 618
 619
 620
 621        if(kDeltaAODJetName.Length()==0&&kFilterAOD){
 622          if(kIsPbPb)taskCl->SetJetTriggerPtCut(0.0001);
 623          else taskCl->SetJetTriggerPtCut(20.);
 624        }
 625
 626        if(kUseAODMC){
 627          if(kIsPbPb){
 628            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 629            taskCl->SetBackgroundCalc(kTRUE);
 630            taskCl->SetGhostEtamax(0.9);
 631            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 632
 633            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 634            taskCl->SetBackgroundCalc(kTRUE);
 635            taskCl->SetGhostEtamax(fTrackEtaWindow);
 636            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch(),fTrackEtaWindow);
 637          }
 638          else{
 639            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 640            taskCl->SetBackgroundCalc(kTRUE);
 641            taskCl->SetGhostEtamax(fTrackEtaWindow);
 642            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 643
 644            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow); // this one is for the background and random jets
 645            taskCl->SetBackgroundCalc(kTRUE);
 646            taskCl->SetGhostEtamax(fTrackEtaWindow);
 647            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 648            // pp background calcs...
 649          }
 650
 651          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 652          taskCl->SetGhostEtamax(fTrackEtaWindow);
 653          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC.Data());
 654          kDefaultJetBranchMC = taskCl->GetJetOutputBranch();
 655
 656          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow);
 657          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC2.Data());
 658          kDefaultJetBranchMC2 = taskCl->GetJetOutputBranch();
 659
 660        }
 661
 662
 663        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 664      }
 665    }
 666
 667
 668    if(iJETSUBTRACT&&kJetSubtractBranches.Length()){
 669      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetBackgroundSubtract.C");
 670      AliAnalysisTaskJetBackgroundSubtract *taskSubtract = 0;
 671      if(kJetSubtractBranches.Length()){
 672
 673        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,3,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 674        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 675        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 676
 677        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,2,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 678        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());           taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 679        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 680
 681        //       taskSubtract->SetDebugLevel(3);
 682
 683        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,1,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 684        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());           taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 685        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 686
 687        if(kJetSubtractBranches.Contains(kDefaultJetBranch.Data())&&kIsPbPb){
 688          kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 689        }
 690
 691        // cut1
 692        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut1,1,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut1000");
 693        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 694        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 695        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 696      }
 697      if(kJetSubtractBranches_extra.Length()){
 698        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches_extra,1,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"extra");
 699        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 700        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 701        //taskSubtract->SetDebugLevel(3);
 702        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 703        if(kJetSubtractBranches_extra.Contains(kDefaultJetBranch.Data())){
 704          kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 705        }
 706      }
 707      if (!taskSubtract) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetBackgroundSubtrac cannot run for this train conditions - EXCLUDED");
 708    }
 709
 710    if (iDIJETAN) {
 711       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 712       AliAnalysisTaskDiJets *taskdijets = 0;
 713       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 714       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 715       if(iDIJETAN&2){
 716         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 717         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 718         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 719         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 720         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 721         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 722       }
 723    }
 724
 725    if(iPWG1QASym){
 726      gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
 727      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 728      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 729    }
 730
 731
 732
 733    if(iPWG4TmpSourceSara){
 734      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 735      AliAnalysisTaskEta *taskEta = AddTaskEta();
 736      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 737    }
 738
 739
 740    if(iPWG4JetServices){
 741      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 742      AliAnalysisTaskJetServices *taskjetServ = 0;
 743      taskjetServ = AddTaskJetServices();
 744      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 745      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 746      else taskjetServ->SetRunRange(110000,160000);
 747      taskjetServ->SetMCData(kIsMC);
 748      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 749      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 750      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 751      if(kIsPbPb){
 752        if(kDeltaAODJetName.Length()>0&&kFilterAOD)taskjetServ->SetFilterAODCollisions(kTRUE);
 753        //       else if(iAODanalysis)taskjetServ->SetFilterAODCollisions(kTRUE);
 754        taskjetServ->SetDebugLevel(3);
 755        taskjetServ->SetZVertexCut(8.);
 756      }
 757      if(iAODanalysis){
 758        //
 759        taskjetServ->SetAODInput(kTRUE);
 760      }
 761    }
 762
 763    if(iPWG4JetSpectrum){
 764      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 765      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 766      TString bkgClusters = kDefaultJetBackgroundBranch.Data();
 767      bkgClusters.ReplaceAll(Form("%s_",AliAODJetEventBackground::StdBranchName()),"");
 768
 769      if(iPWG4JetSpectrum&1){
 770        if(kIsPbPb){
 771          for(int i = 0;i<5;i++){
 772            TString tmp(kDefaultJetBranch.Data());
 773            //      tmp.ReplaceAll(Form(kJetSubtractMask2.Data(),1),kJetSubtractMask1.Data());
 774            //      tmp.ReplaceAll(Form(kJetSubtractMask2.Data(),1),kJetSubtractMask1.Data());
 775            tmp.ReplaceAll(Form(kJetSubtractMask2.Data(),1),Form(kJetSubtractMask1.Data(),0));
 776
 777            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),tmp.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 778            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 779            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 780
 781            //      taskjetSpectrum->SetDebugLevel(3);
 782            //      taskjetSpectrum->SetMinJetPt(10);
 783            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 784            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 785            if(i!=1){
 786              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,0);
 787              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
 788            }
 789            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 790
 791            TString tmpCut1(kDefaultJetBranch.Data());
 792            TString tmp2Cut1(kDefaultJetBranch.Data());
 793            tmp2Cut1.ReplaceAll(Form(kJetSubtractMask2.Data(),1),Form(kJetSubtractMask1.Data(),0));
 794            tmp2Cut1.ReplaceAll("00150","01000");
 795            tmpCut1.ReplaceAll("00150","01000");
 796
 797
 798            taskjetSpectrum = AddTaskJetSpectrum2(tmpCut1.Data(),tmp2Cut1.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 799            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 800            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 801            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 802            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 803            if(i!=1){
 804              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,0);
 805              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
 806            }
 807
 808            //
 809
 810            // the random jets...
 811            taskjetSpectrum = AddTaskJetSpectrum2("clustersAOD_KT04_B0_Filter00256_Cut00150_Skip00RandomConeSkip00",
 812                                                  "clustersAOD_KT04_B0_Filter00256_Cut00150_Skip00RandomCone_random",
 813                                                  kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 814
 815            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 816            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 817            taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,0);
 818            taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
 819            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 820            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 821
 822            taskjetSpectrum = AddTaskJetSpectrum2("clustersAOD_KT04_B0_Filter00256_Cut01000_Skip00RandomConeSkip00",
 823                                                  "clustersAOD_KT04_B0_Filter00256_Cut01000_Skip00RandomCone_random",
 824                                                  kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 825            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 826            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 827            taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,0);
 828            taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
 829            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 830            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 831
 832
 833            // check the old subtracted vs. the new subtracted
 834            /*
 835            TString tmp2(kDefaultJetBranch.Data());
 836            tmp2.ReplaceAll(Form(kJetSubtractMask2.Data(),1),Form(kJetSubtractMask2.Data(),2));
 837            taskjetSpectrum = AddTaskJetSpectrum2(tmp2.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 838            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 839            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 840            //      taskjetSpectrum->SetDebugLevel(3);
 841            //      taskjetSpectrum->SetMinJetPt(10);
 842            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 843            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 844            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 845            */
 846            // check the old subtracted vs. the new subtracted
 847            /*
 848            TString tmp3(kDefaultJetBranch.Data());
 849            tmp3.ReplaceAll(Form(kJetSubtractMask2.Data(),1),Form(kJetSubtractMask2.Data(),3));
 850
 851            taskjetSpectrum = AddTaskJetSpectrum2(tmp3.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 852            //      taskjetSpectrum->SetDebugLevel(3);
 853            //      taskjetSpectrum->SetMinJetPt(10);
 854            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 855            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 856            taskjetSpectrum->SetTrackEtaWindow(0.8);
 857            taskjetSpectrum->SetJetEtaWindow(0.4);
 858            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 859            */
 860
 861            taskjetSpectrum = AddTaskJetSpectrum2(Form("jetsAOD_UA104_B2_Filter%05d_Cut01000",kHighPtFilterMask),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 862            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 863            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 864            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 865            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 866            if(i!=1){
 867              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,0);
 868              taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
 869            }
 870            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 871
 872          }
 873        }
 874        else{ // ! PbPb
 875          Int_t i = 0;
 876
 877          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
 878                                                "",kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 879
 880
 881
 882          if(kDefaultJetBranchMC.Length()){
 883            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
 884                                                kDefaultJetBranchMC.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 885            //      taskjetSpectrum->SetMinJetPt(10);
 886            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 887            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 888            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 889            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 890            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 891          }
 892          if(kDefaultJetBranchMC2.Length()){
 893            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
 894                                                  kDefaultJetBranchMC2.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 895            //      taskjetSpectrum->SetMinJetPt(10);
 896            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
 897            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
 898            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 899            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 900            if(iAODanalysis)SetAODInput(taskjetSpectrum);
 901          }
 902
 903          /*
 904          TString tmp2(kDefaultJetBranch.Data());
 905          tmp2.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),2));
 906          taskjetSpectrum = AddTaskJetSpectrum2(tmp2.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 907          //      taskjetSpectrum->SetDebugLevel(3);
 908          //        taskjetSpectrum->SetMinJetPt(10);
 909          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 910          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 911          taskjetSpectrum->SetTrackEtaWindow(0.8);
 912          taskjetSpectrum->SetJetEtaWindow(0.4);
 913
 914          // check the old subtracted vs. the new subtracted
 915          TString tmp3(kDefaultJetBranch.Data());
 916          tmp3.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),3));
 917          taskjetSpectrum = AddTaskJetSpectrum2(tmp3.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
 918          //      taskjetSpectrum->SetDebugLevel(3);
 919          //        taskjetSpectrum->SetMinJetPt(10);
 920          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
 921          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
 922          taskjetSpectrum->SetTrackEtaWindow(0.8);
 923          taskjetSpectrum->SetJetEtaWindow(0.4);
 924          if(iAODanalysis)SetAODInput(taskjetSpectrum);
 925          */
 926        }
 927        if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
 928      }
 929    }
 930    AliAnalysisManager::SetCommonFileName("PWG4_Fragmentation.root");
 931    if(iPWG4Fragmentation){
 932      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
 933        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
 934        if(kUseAODMC){
 935
 936        }
 937        else{
 938          // Anti-kT
 939          taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, 1);
 940          taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, 2);
 941          taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, 3);
 942          taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, 4);
 943
 944          // UA1
 945          taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, 1);
 946          taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, 2);
 947          taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, 3);
 948          taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, 4);
 949
 950          // SISCONE
 951          /*
 952          taskFrag = AddTaskFragmentationFunction(1<<28,kHighPtFilterMask, 1);
 953          taskFrag = AddTaskFragmentationFunction(1<<29,kHighPtFilterMask, 1);
 954          taskFrag = AddTaskFragmentationFunction(1<<30,kHighPtFilterMask, 1);
 955          */
 956
 957          // Anti-kT B2 - B3
 958          taskFrag = AddTaskFragmentationFunction(1<<26,kHighPtFilterMask, 1);
 959          taskFrag = AddTaskFragmentationFunction(1<<27,kHighPtFilterMask, 1);
 960
 961
 962
 963        }
 964        if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
 965    }
 966
 967    if(iPWG4JetChem){
 968      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
 969      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
 970      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
 971    }
 972
 973    if (iPWG4JetResponse) {
 974      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetResponse.C");
 975      AliAnalysisTask *taskJetResponse = 0;
 976
 977      if(iJETAN){
 978         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 0);
 979         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 1);
 980
 981         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 0);
 982         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 2);
 983      }
 984      if(iPWG4Cluster){
 985         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 0);
 986         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 1);
 987      }
 988      if (!taskJetResponse) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetResponse cannot run for this train conditions - EXCLUDED");
 989
 990    }
 991
 992    if(iPWG4JCORRAN){
 993      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
 994      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
 995      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
 996      else{
 997        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
 998      }
 999    }
1000
1001    if(iPWG4UE){
1002      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
1003      AliAnalysisTaskUE *taskUE = 0;
1004      if(iPWG4UE&1)taskUE = AddTaskUE();
1005      if(iPWG4UE&2){
1006        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1007        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
1008        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
1009        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1010        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
1011        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
1012        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1013        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
1014        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
1015      }
1016
1017      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
1018    }
1019
1020    if(iPWG4LeadingUE){
1021      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
1022      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
1023      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
1024      //     taskLeadingUE->SetFilterBit(64);
1025    }
1026
1027
1028    if(iPWG4CorrectionsUE){
1029      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
1030      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
1031      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
1032      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
1033    }
1034
1035    if(iPWG4ThreeJets){
1036      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
1037      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
1038      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
1039    }
1040    if(iPWG4QGSep){
1041      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
1042      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
1043      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
1044    }
1045
1046
1047    if(iPWG4Minijet){
1048      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
1049      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
1050      // if we ha highmult trigger add another task
1051      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
1052    }
1053
1054    AliAnalysisManager::SetCommonFileName("PWG4_HighPtQA.root");
1055    if(iPWG4PtQAMC){
1056      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
1057      AliPWG4HighPtQAMC *taskQAMC = 0;
1058      if(kUseMC){
1059        if(iPWG4PtQAMC&1){
1060          taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
1061          taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
1062          taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),2);
1063          taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),3);
1064        }
1065      }
1066      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
1067    }
1068
1069    if(iPWG4PtTrackQA){
1070      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtTrackQA.C");
1071
1072      AddTaskPWG4HighPtTrackQAAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1073
1074    }
1075
1076    if(iPWG4PtQATPC){
1077      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
1078      AliPWG4HighPtQATPConly *taskQATPC = 0;
1079      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
1080      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
1081
1082  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
1083    }
1084
1085    if(iPWG4Cosmics){
1086      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
1087
1088      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
1089      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
1090
1091      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
1092    }
1093
1094
1095    if(iPWG4PtSpectra){
1096      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
1097      AddTaskPWG4HighPtSpectraAll(kGridDataSet.Data(),kIsPbPb);
1098    }
1099
1100    if(iPWG4KMeans){
1101      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
1102      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
1103      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
1104    }
1105
1106    if(iPWG4PartCorr){
1107      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
1108      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
1109      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
1110      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
1111      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
1112      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
1113    }
1114
1115    if(iPWG4CaloQA){
1116      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
1117      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
1118      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
1119      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
1120    }
1121
1122    if(iPWG4JetCorr){
1123      //     using namespace JetCorrelHD;
1124      TString cdir = gSystem->WorkingDirectory();
1125      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1126      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
1127      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
1128      gSystem->ChangeDirectory(cdir);
1129      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
1130    }
1131
1132    if(iPWG4Tagged){
1133      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
1134      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
1135      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
1136      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
1137    }
1138    if (iPWG4omega3pi) {
1139      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
1140      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
1141      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
1142  for these train conditions - EXCLUDED");
1143    }
1144
1145    // PWG4 gamma conversion analysis
1146    if (iPWG4GammaConv) {
1147       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
1148       TString cdir = gSystem->WorkingDirectory();
1149       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1150       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
1151       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1152       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1153       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
1154       //      TString kGCAnalysisCutSelectionId="9003562000100310";
1155       //      TString kGCAnalysisCutSelectionId="9003562000100312";
1156       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
1157       if(!kIsMC)gcArguments += " -mc-off";
1158       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
1159       gSystem->ChangeDirectory(cdir);
1160       taskGammaConversion->SelectCollisionCandidates();
1161       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
1162    }
1163
1164    if (iPWG4CaloConv) {
1165       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
1166       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
1167       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
1168    }
1169
1170
1171
1172    //==========================================================================
1173    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
1174    // Run the analysis
1175    //
1176    if (kPluginUse) {
1177       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1178       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1179    }
1180
1181    if (mgr->InitAnalysis()) {
1182      mgr->PrintStatus();
1183      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
1184      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
1185        TString alien_workdir = gGrid->GetHomeDirectory();
1186        if (iAODanalysis) alien_workdir += "analysisAOD";
1187        else              alien_workdir += "analysisESD";
1188        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1189        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1190        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
1191               alien_workdir.Data(),gridhandler->GetGridOutputDir());
1192
1193        TString dest;
1194        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1195        if(AliAnalysisAlien::FileExists(dest.Data())){
1196          Printf("%s exist on grid removing...",dest.Data());
1197          gGrid->Rm(dest.Data());
1198        }
1199        Printf("%s copy ...",dest.Data());
1200        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1201
1202
1203        TString dest;
1204        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1205        if(AliAnalysisAlien::FileExists(dest.Data())){
1206          Printf("%s exist on grid removing...",dest.Data());
1207          gGrid->Rm(dest.Data());
1208        }
1209        Printf("%s copy ...",dest.Data());
1210        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1211
1212        dest = Form("%s/%s/%s_merge_final.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1213        if(AliAnalysisAlien::FileExists(dest.Data())){
1214          Printf("%s exist on grid removing...",dest.Data());
1215          gGrid->Rm(dest.Data());
1216        }
1217        Printf("%s copy ...",dest.Data());
1218        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1219
1220
1221        /*
1222        dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
1223        if(AliAnalysisAlien::FileExists(dest.Data())){
1224          Printf("%s exist on grid removing...",dest.Data());
1225          gGrid->Rm(dest.Data());
1226        }
1227        TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
1228                       gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
1229        */
1230      }
1231      AliLog::SetGlobalLogLevel(AliLog::kError);
1232      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1233        TFile * fM = TFile::Open("manager_local.root","RECREATE");
1234        mgr->Write();
1235        fM->Close();
1236      }
1237
1238      // grmpf, aliroot error handler overwrites root
1239      gErrorIgnoreLevel = kErrorIgnoreLevel;
1240      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
1241      StartAnalysis(smode, chain);
1242      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1243        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
1244          mgr->ProfileTask(i);
1245        }
1246      }
1247      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
1248        // Offline mode path files
1249        //       PatchJDL();
1250        //       PatchAnalysisMacro();
1251      }
1252
1253      if (kSaveTrain && smode=="GRID") {
1254        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1255        TString alien_workdir = gGrid->GetHomeDirectory();
1256        if (iAODanalysis) alien_workdir += "analysisAOD";
1257        else              alien_workdir += "analysisESD";
1258        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1259        //     kGridOutdir = gridhandler->GetGridOutputDir();
1260        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
1261                 alien_workdir.Data());
1262        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
1263          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1264        if (strcmp(plugin_mode, "test"))
1265          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1266      }
1267    }
1268 }
1269
1270 //______________________________________________________________________________
1271 void StartAnalysis(const char *mode, TChain *chain) {
1272 // Start analysis.
1273    Int_t imode = -1;
1274    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1275    if (!strcmp(mode, "LOCAL")) imode = 0;
1276    if (!strcmp(mode, "PROOF")) imode = 1;
1277    if (!strcmp(mode, "GRID"))  imode = 2;
1278    switch (imode) {
1279       case 0:
1280          if (!chain) {
1281             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1282             return;
1283          }
1284          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1285          return;
1286       case 1:
1287          if (!kProofDataSet.Length()) {
1288             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
1289             return;
1290          }
1291          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
1292          return;
1293       case 2:
1294          if (kPluginUse) {
1295             if (!mgr->GetGridHandler()) {
1296                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
1297                return;
1298             }
1299             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
1300          } else {
1301             if (!chain) {
1302                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1303                return;
1304             }
1305             mgr->StartAnalysis(mode, chain);
1306             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1307          }
1308          return;
1309    }
1310 }
1311
1312 //______________________________________________________________________________
1313 void CheckModuleFlags(const char *mode) {
1314 // Checks selected modules and insure compatibility
1315    Int_t imode = -1;
1316    if (!strcmp(mode, "LOCAL")) imode = 0;
1317    if (!strcmp(mode, "PROOF")) imode = 1;
1318    if (!strcmp(mode, "GRID"))  imode = 2;
1319
1320
1321    if (kUseCPAR) {
1322      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
1323    }
1324
1325    if (imode==1) {
1326       if (!kUsePAR) {
1327          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
1328          kUsePAR = kTRUE;
1329       }
1330    }
1331    if (imode != 2) {
1332       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
1333       kPluginUse = kFALSE;
1334    }
1335
1336
1337    if(!kIsMC){
1338      // switch off anthin related to MC
1339      kUseMC = 0;
1340      kUseAODMC = 0;
1341      kUseTR = kFALSE;
1342    }
1343
1344    // Decide if we have PbPb
1345    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
1346      Printf("Using settings for Pb+Pb");
1347      kIsPbPb = true;
1348    }
1349
1350
1351
1352    if (iAODanalysis) {
1353    // AOD analysis
1354       if (kUseMC)
1355          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
1356       if (kUseAODTags)
1357          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
1358       kUseMC = kFALSE;
1359       kUseTR = kFALSE;
1360       kUseAODTags = kFALSE;
1361       if (iESDfilter)
1362          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
1363       iESDfilter   = 0;
1364       if (iPhysicsSelection)
1365          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
1366       iPhysicsSelection   = 0;
1367       if (!iAODhandler) {
1368          if (iJETAN)
1369             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
1370          iJETAN = 0;
1371          iDIJETAN = 0;
1372       }
1373       // Disable tasks that do not work yet on AOD data
1374       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
1375       iPWG4JCORRAN = 0;
1376       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1377       iPWG4PtQAMC        = 0;
1378       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
1379       iPWG4PtQATPC        = 0;
1380       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
1381       iPWG4Cosmics        = 0;
1382
1383       if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1384       iPWG4PtSpectra     = 0;
1385       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1386       iPWG4KMeans       = 0;
1387       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1388       iPWG4JetCorr = 0;
1389       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1390       iPWG4PartCorr = 0;
1391       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1392       iPWG4CaloQA = 0;
1393       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1394       iPWG4Tagged = 0;
1395       if (iPWG4omega3pi)
1396         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1397       iPWG4omega3pi = 0;
1398       if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
1399       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1400       iPWG4GammaConv = 0;
1401       iPWG1QASym     = 0;
1402       iCentralitySelection = 0;
1403    } else {
1404    // ESD analysis
1405
1406      if(kIsPbPb){
1407        iCentralitySelection = 1;
1408      }
1409
1410      if (!kUseMC){
1411        kUseTR = kFALSE;
1412
1413        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1414        kUseKinefilter = kFALSE;
1415        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1416        iPWG4PtQAMC        = 0;
1417        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1418        iPWG4CorrectionsUE = 0;
1419      }
1420      if (iJETAN){
1421        iESDfilter=1;
1422      }
1423       if (!iESDfilter){
1424         kUseKinefilter = kFALSE;
1425         kUseMuonfilter = kFALSE;
1426       }
1427       if(!iJETAN){
1428         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
1429       }
1430    }
1431    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtTrackQA||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
1432    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
1433    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1434
1435
1436    iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib||iJETAN;
1437    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1438
1439    if (iESDfilter) {iAODhandler=1;}
1440    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1441    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1442
1443
1444
1445 }
1446
1447 //______________________________________________________________________________
1448 Bool_t Connect(const char *mode) {
1449 // Connect <username> to the back-end system.
1450    Int_t imode = -1;
1451    if (!strcmp(mode, "LOCAL")) imode = 0;
1452    if (!strcmp(mode, "PROOF")) imode = 1;
1453    if (!strcmp(mode, "GRID"))  imode = 2;
1454    TString username = gSystem->Getenv("alien_API_USER");
1455    switch (imode) {
1456       case 0:
1457          break;
1458       case 1:
1459          if  (!username.Length()) {
1460             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1461                            1. Have called: alien-token-init <username>\n \
1462                            2. Have called: >source /tmp/gclient_env_$UID");
1463             return kFALSE;
1464          }
1465          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1466                 username.Data(), kProofCluster.Data());
1467          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1468 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1469          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1470          if (!gProof) {
1471             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1472                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1473             return kFALSE;
1474          }
1475          if(kProofClearPackages)gProof->ClearPackages();
1476
1477          if(kProofSaveToAlien){
1478            TGrid::Connect("alien://");
1479            if (gGrid) {
1480              TString homedir = gGrid->GetHomeDirectory();
1481              TString workdir = homedir + kTrainName;
1482              if (!gGrid->Cd(workdir)) {
1483                gGrid->Cd(homedir);
1484                if (gGrid->Mkdir(workdir)) {
1485                  gGrid->Cd(kTrainName);
1486                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1487                }
1488              }
1489              gGrid->Mkdir("proof_output");
1490              gGrid->Cd("proof_output");
1491              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1492            }
1493          }
1494          break;
1495       case 2:
1496          if  (!username.Length()) {
1497             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1498                            1. Have called: alien-token-init <username>\n \
1499                            2. Have called: >source /tmp/gclient_env_$UID");
1500             return kFALSE;
1501          }
1502          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1503             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1504                            "When using the AliEn plugin it is preferable to define the \
1505                            variable alien_CLOSE_SE in your environment.");
1506             return kFALSE;
1507          }
1508          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1509                 username.Data());
1510          TGrid::Connect("alien://");
1511          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1512          break;
1513       default:
1514          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1515          return kFALSE;
1516    }
1517    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1518    return kTRUE;
1519 }
1520
1521 //______________________________________________________________________________
1522 Bool_t LoadCommonLibraries(const char *mode)
1523 {
1524    if (!gSystem->Getenv("ALICE_ROOT")) {
1525       ::Error("AnalysisTrainPWG4Jets.C", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1526       return kFALSE;
1527    }
1528
1529    // Load common analysis libraries.
1530    Int_t imode = -1;
1531    if (!strcmp(mode, "LOCAL")) imode = 0;
1532    if (!strcmp(mode, "PROOF")) imode = 1;
1533    if (!strcmp(mode, "GRID"))  imode = 2;
1534    Bool_t success = kTRUE;
1535    // ROOT libraries
1536    gSystem->Load("libTree.so");
1537    gSystem->Load("libGeom.so");
1538    gSystem->Load("libVMC.so");
1539    gSystem->Load("libPhysics.so");
1540
1541    // Load framework classes. Par option ignored here.
1542    switch (imode) {
1543       case 0:
1544       case 2:
1545          if (kUseCPAR) {
1546             success &= LoadLibrary("STEERBase", mode, kTRUE);
1547             success &= LoadLibrary("ESD", mode, kTRUE);
1548             success &= LoadLibrary("AOD", mode, kTRUE);
1549             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1550             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1551             success &= LoadLibrary("OADB", mode, kTRUE);
1552             success &= LoadLibrary("ROOTFILES", mode, kTRUE);
1553             //            success &= LoadLibrary("EventMixing", mode,kTRUE);
1554             success &= LoadLibrary("CORRFW", mode, kTRUE);
1555          } else {
1556             success &= LoadLibrary("libSTEERBase.so", mode);
1557             success &= LoadLibrary("libESD.so", mode);
1558             success &= LoadLibrary("libAOD.so", mode);
1559             success &= LoadLibrary("libANALYSIS.so", mode);
1560             success &= LoadLibrary("libANALYSISalice.so", mode);
1561             success &= LoadLibrary("libOADB.so", mode, kTRUE);
1562             //            success &= LoadLibrary("libEventMixing.so", mode);
1563             success &= LoadLibrary("libCORRFW.so", mode);
1564             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1565          }
1566          break;
1567       case 1:
1568          Int_t ires = -1;
1569          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1570          if (ires < 0) {
1571             success &= LoadLibrary("STEERBase", mode);
1572             success &= LoadLibrary("ESD", mode);
1573             success &= LoadLibrary("AOD", mode);
1574             success &= LoadLibrary("ANALYSIS", mode);
1575             success &= LoadLibrary("ANALYSISalice", mode);
1576             success &= LoadLibrary("EventMixing", mode);
1577             success &= LoadLibrary("CORRFW", mode);
1578          } else {
1579             ires = gProof->EnablePackage(kProofAFversion);
1580             if (ires<0) success = kFALSE;
1581             success &= LoadLibrary("CORRFW", mode);
1582          }
1583          break;
1584       default:
1585          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1586          return kFALSE;
1587    }
1588    if (success) {
1589       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1590       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1591               gSystem->GetIncludePath());
1592    } else {
1593       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1594    }
1595
1596    return success;
1597 }
1598
1599 //______________________________________________________________________________
1600 Bool_t LoadAnalysisLibraries(const char *mode)
1601 {
1602 // Load common analysis libraries.
1603   Bool_t success = kTRUE;
1604   if (useTender) {
1605       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1606           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1607    }
1608    if (iESDfilter) {
1609      /*
1610       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1611           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1612      */
1613    }
1614    // JETAN
1615    if (iJETANLib) {
1616      // this part needs some rework in case we do not need the fastjed finders for processing
1617      if(iEMCUtilLibs){
1618        if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1619            !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1620      }
1621      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1622      if (!strcmp(mode, "PROOF")){
1623        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1624        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1625        // problem when loading siscone copiled with different gcc version??
1626        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1627        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1628      }
1629      if(!kUsePAR){
1630        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1631        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1632        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1633        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1634      }
1635      else{
1636        // par files plus FASTJET needs some extra work... need to change
1637        // the loading sequence in the auto generated .C file
1638        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1639        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1640        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1641        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1642      }
1643      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1644    }
1645    if(iPWG4JetTasks){
1646      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1647    }
1648
1649    if(iPWG1QASym){
1650      if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1651    }
1652    if(iPWG4TmpSourceSara){
1653      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1654      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1655    }
1656
1657    if (iPWG4PartCorrLibs) {
1658       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1659           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1660    }
1661    if(iPWG4JCORRAN){
1662      // PWG4 particle correlations
1663      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1664    }
1665    if (iPWG4JetCorr) {
1666      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1667    }
1668    if (iPWG4omega3pi) {
1669      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1670    }
1671    if (iPWG4GammaConvLib) {
1672       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1673    }
1674
1675    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1676    return kTRUE;
1677 }
1678
1679 //______________________________________________________________________________
1680 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1681 {
1682 // Load a module library in a given mode. Reports success.
1683    Int_t imode = -1;
1684    Int_t result;
1685    TString smodule(module);
1686    if (!strcmp(mode, "LOCAL")) imode = 0;
1687    if (!strcmp(mode, "PROOF")) imode = 1;
1688    if (!strcmp(mode, "GRID"))  imode = 2;
1689    TString mod(module);
1690    if (!mod.Length()) {
1691       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1692       return kFALSE;
1693    }
1694    // If a library is specified, just load it
1695    if (smodule.EndsWith(".so")) {
1696       mod.Remove(mod.Index(".so"));
1697       result = gSystem->Load(mod);
1698       if (result < 0) {
1699          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1700          return kFALSE;
1701       }
1702       if (rec) anaLibs += Form("%s.so ",mod.Data());
1703       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1704       return kTRUE;
1705    }
1706    // Check if the library is already loaded
1707    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1708       return kTRUE;
1709    switch (imode) {
1710       case 0:
1711       case 2:
1712          if (kUsePAR) {
1713             result = SetupPar(module);
1714             if (rec) anaPars += Form("%s.par ", module);
1715          } else {
1716             result = gSystem->Load(Form("lib%s.so", module));
1717             if (rec) anaLibs += Form("lib%s.so ", module);
1718          }
1719          break;
1720       case 1:
1721         if(!gSystem->AccessPathName(module)){
1722           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1723           gSystem->Exec(Form("rm -rf %s",module));
1724         }
1725          result = gProof->UploadPackage(module);
1726          if (result<0) {
1727             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1728             if (result<0) {
1729                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1730                return kFALSE;
1731             }
1732          }
1733          result = gProof->EnablePackage(module);
1734          break;
1735       default:
1736          return kFALSE;
1737    }
1738    if (result < 0) {
1739       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1740       return kFALSE;
1741    }
1742    return kTRUE;
1743 }
1744
1745
1746
1747 //______________________________________________________________________________
1748 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1749 {
1750 // Load a module library in a given mode. Reports success.
1751    Int_t imode = -1;
1752    Int_t result = -1;
1753    if (!strcmp(mode, "LOCAL")) imode = 0;
1754    if (!strcmp(mode, "PROOF")) imode = 1;
1755    if (!strcmp(mode, "GRID"))  imode = 2;
1756    TString ssource(source);
1757    TString basename = gSystem->BaseName(ssource.Data());
1758    if (!ssource.Length()) {
1759       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1760       return kFALSE;
1761    }
1762    // we have a source code so compile it
1763    if (ssource.EndsWith(".cxx")) {
1764      // need to copy it here other wise the path is also used on grid...
1765      ssource.Remove(ssource.Index(".cxx"));
1766      basename.Remove(basename.Index(".cxx"));
1767      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1768      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1769      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1770      // Path to code
1771      // only needed for local compilation, in grid and proof mode
1772      // the task headers are uploaded
1773      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1774      // Printf("LoadSources:: Including path %s",path.Data());
1775      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1776      Printf("LoadSources:: Loading...  path %s",basename.Data());
1777      switch (imode) {
1778      case 0:
1779        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1780        break;
1781      case 1:
1782        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1783        break;
1784      case 2:
1785        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1786        if (rec){
1787          // what we want to compile
1788          anaSources += Form("%s.cxx ",basename.Data());
1789          // what we need as input...
1790          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1791        }
1792        break;
1793      default:
1794        return kFALSE;
1795      }
1796    }
1797    if (result < 0) {
1798       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1799       return kFALSE;
1800    }
1801    return kTRUE;
1802 }
1803
1804
1805 //______________________________________________________________________________
1806 TChain *CreateChain(const char *mode, const char *plugin_mode)
1807 {
1808 // Create the input chain
1809    Int_t imode = -1;
1810    if (!strcmp(mode, "LOCAL")) imode = 0;
1811    if (!strcmp(mode, "PROOF")) imode = 1;
1812    if (!strcmp(mode, "GRID"))  imode = 2;
1813    TChain *chain = NULL;
1814    // Local chain
1815    switch (imode) {
1816       case 0:
1817          if (iAODanalysis) {
1818             if (!kLocalXMLDataset.Length()) {
1819                // Local AOD
1820                chain = new TChain("aodTree");
1821                TString line;
1822                ifstream in;
1823                in.open(kLocalDataList.Data());
1824                Int_t ic = 0;
1825                while (in.good()) {
1826                  in >> line;
1827                  if (line.Length() == 0) continue;
1828                  Printf("%d adding %s",ic,line.Data());
1829                  chain->Add(line.Data());
1830                  ic++;
1831                }
1832             } else {
1833                // Interactive AOD
1834                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1835             }
1836          } else {
1837            if (!kLocalXMLDataset.Length()) {
1838              // Local ESD
1839              chain = new TChain("esdTree");
1840              TString line;
1841              ifstream in;
1842              in.open(kLocalDataList.Data());
1843              while (in.good()) {
1844                in >> line;
1845                if (line.Length() == 0) continue;
1846                cout << " line = " << line << endl;
1847                chain->Add(line.Data());
1848              }
1849            } else {
1850              // Interactive ESD
1851                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1852            }
1853          }
1854          break;
1855       case 1:
1856          break;
1857       case 2:
1858          if (kPluginUse) {
1859 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1860 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1861          } else {
1862             TString           treeName = "esdTree";
1863             if (iAODanalysis) treeName = "aodTree";
1864             chain = CreateChainSingle("wn.xml", treeName);
1865          }
1866          break;
1867       default:
1868    }
1869    if (chain && chain->GetNtrees()) return chain;
1870    return NULL;
1871 }
1872
1873 //______________________________________________________________________________
1874 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1875 {
1876    printf("*******************************\n");
1877    printf("*** Getting the ESD Chain   ***\n");
1878    printf("*******************************\n");
1879    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
1880
1881    if (!myCollection) {
1882       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1883       return NULL ;
1884    }
1885
1886    TChain* chain = new TChain(treeName);
1887    myCollection->Reset() ;
1888    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1889    chain->ls();
1890    return chain;
1891 }
1892
1893 //______________________________________________________________________________
1894 Int_t SetupPar(char* pararchivename)
1895 {
1896    if (!pararchivename || !strlen(pararchivename)) return -1;
1897    char processline[1024];
1898    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1899       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1900          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1901         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1902                   Form("%s.par",pararchivename));
1903       } else {
1904          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1905          return -1;
1906       }
1907    }
1908    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1909    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1910
1911    TString ocwd = gSystem->WorkingDirectory();
1912    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1913
1914    // check for BUILD.sh and execute
1915    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1916       printf("*******************************\n");
1917       printf("*** Building PAR archive    ***\n");
1918       printf("*******************************\n");
1919       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1920          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1921          return -1;
1922       }
1923    }
1924
1925         // check for SETUP.C and execute
1926         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1927             printf("*******************************\n");
1928             printf("*** Setup PAR archive       ***\n");
1929             printf("*******************************\n");
1930             gROOT->Macro("PROOF-INF/SETUP.C");
1931         }
1932         if (!gSystem->ChangeDirectory(ocwd.Data())){
1933           Error("Change back directory",Form("Cannot change to %s",ocwd.Data()));
1934           return -1;
1935         }
1936    return 0;
1937 }
1938
1939 //______________________________________________________________________________
1940 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1941 {
1942 // Check if user has a valid token, otherwise make one. This has limitations.
1943 // One can always follow the standard procedure of calling alien-token-init then
1944 //   source /tmp/gclient_env_$UID in the current shell.
1945 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
1946    AliAnalysisAlien *plugin = new AliAnalysisAlien();
1947 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1948    plugin->SetRunMode(plugin_mode);
1949    if (kPluginUseProductionMode) plugin->SetProductionMode();
1950    plugin->SetJobTag(kJobTag);
1951    plugin->SetNtestFiles(1);
1952 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
1953 // Set versions of used packages
1954    plugin->SetAPIVersion("V1.1x");
1955    //   plugin->SetAPIVersion("V1.0x");
1956 //   plugin->SetAPIVersion("V2.4");
1957    plugin->SetROOTVersion(kPluginRootVersion);
1958    plugin->SetAliROOTVersion(kPluginAliRootVersion);
1959 // Declare input data to be processed.
1960 // Method 1: Create automatically XML collections using alien 'find' command.
1961 // Define production directory LFN
1962    plugin->SetGridDataDir(kGridDatadir.Data());
1963 // Set data search pattern
1964    if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.Jets.root");
1965    //   else              plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1966    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
1967 // ...then add run numbers to be considered
1968 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1969    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1970      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1971      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1972    }
1973
1974    if(kGridLocalRunList.Length()>0){
1975      ifstream in1;
1976      in1.open(kGridLocalRunList.Data());
1977      int iRun;
1978      int icount = 0;
1979      /*
1980      char c;
1981      char cLine[250];
1982      while(!in1.eof()){
1983        c = in1.get();
1984        if ( (c >= '0') && (c <= '9') )
1985          {
1986            in1.putback (c)s;
1987            in1>>iRun;
1988            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1989            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1990        }
1991      else
1992        {
1993          in1.putback (c);
1994          in1.getline(cLine,250);
1995
1996        }
1997      }
1998      */
1999
2000      Int_t nRun = 0;
2001
2002      // just use run numbers, negatives will be excluded
2003      while(in1>>iRun){
2004        if(iRun>=0){
2005          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
2006            Printf("AnalysisTrainPWG4Jets Adding run number from File %d: %s",nRun,Form(kGridRunPattern.Data(),iRun));
2007            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
2008
2009          }
2010          else{
2011            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2012          }
2013          nRun++;
2014        }
2015        else{
2016          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2017        }
2018      }
2019    }
2020
2021 // Method 2: Declare existing data files (raw collections, xml collections, root file)
2022 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
2023 // XML collections added via this method can be combined with the first method if
2024 // the content is compatible (using or not tags)
2025 //   plugin->AddDataFile("tag.xml");
2026 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
2027 // Define alien work directory where all files will be copied. Relative to alien $HOME.
2028    TString alien_workdir = "";
2029
2030    if (iAODanalysis)  alien_workdir += "analysisAOD";
2031    else               alien_workdir += "analysisESD";
2032    if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
2033    plugin->SetGridWorkingDir(alien_workdir.Data());
2034
2035    // Declare alien output directory. Relative to working directory.
2036    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2037    plugin->SetGridOutputDir(kGridOutdir);
2038
2039    // Add external packages
2040    if (iJETAN||iDIJETAN) {
2041       plugin->AddExternalPackage("boost::v1_43_0");
2042       plugin->AddExternalPackage("cgal::v3.6");
2043       plugin->AddExternalPackage("fastjet::v2.4.2");
2044    }
2045
2046
2047    // set extra libs before par file compilation
2048    anaLibs += kGridExtraFiles;
2049    anaLibs     = anaLibs.Strip();
2050    Printf("anaLibs %s",anaLibs.Data());
2051    Printf("anaLibsExtra %s",anaLibsExtra.Data());
2052
2053    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
2054    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
2055
2056    TString ana_sources = "";
2057    TString ana_add = "";
2058    if (kUsePAR && anaPars.Length()) {
2059       printf("%s\n", anaPars.Data());
2060       TObjArray *arr;
2061       TObjString *objstr;
2062       arr = anaPars.Tokenize(" ");
2063       TIter next(arr);
2064       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
2065       delete arr;
2066    }
2067
2068 // Declare the analysis source files names separated by blancs. To be compiled runtime
2069 // using ACLiC on the worker nodes.
2070    ana_sources = anaSources.Strip();
2071 // Declare all libraries (other than the default ones for the framework. These will be
2072 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
2073
2074    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
2075    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
2076    // Declare the output file names separated by blancs.
2077    // (can be like: file.root or file.root@ALICE::Niham::File)
2078    plugin->SetMergeExcludes(kGridMergeExclude);
2079    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
2080    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
2081    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
2082    // Use fastread option
2083    plugin->SetFastReadOption(kPluginFastReadOption);
2084    // UseOverwrite mode
2085    plugin->SetOverwriteMode(kPluginOverwriteMode);
2086    // Optionally define the files to be archived.
2087    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
2088    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
2089
2090    // Put default output files to archive
2091    TString listhists = "";
2092    TString listaods  = "";
2093    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2094    TIter next(mgr->GetOutputs());
2095    AliAnalysisDataContainer *output;
2096    while ((output=(AliAnalysisDataContainer*)next())) {
2097       const char *filename = output->GetFileName();
2098       if (!(strcmp(filename, "default"))) {
2099         if (!mgr->GetOutputEventHandler()) continue;
2100          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
2101          if (listaods.Length()) listaods += " ";
2102          listaods += filename;
2103       } else {
2104         if(!listhists.Contains(filename)){
2105           if (listhists.Length()) listhists += " ";
2106           listhists += filename;
2107         }
2108       }
2109    }
2110
2111    if (mgr->GetExtraFiles().Length()) {
2112      if (listaods.Length()) listaods += " ";
2113      listaods += mgr->GetExtraFiles();
2114    }
2115
2116    // if we do not fill the aod we do not need to store it
2117    //   kGridMergeExclude = listaods;
2118
2119    if(kSaveAOD>=0){
2120      TString outputFiles =  "";
2121      outputFiles += mgr->GetExtraFiles();
2122      if (listhists.Length()) outputFiles += " ";
2123      outputFiles += listhists;
2124      plugin->SetDefaultOutputs(kFALSE);
2125      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2126      // remove
2127      // no harm done when we try to remove something that is not there :)
2128      if(!(kSaveAOD&(1<<0))){
2129        outputFiles.ReplaceAll("AliAOD.root ","");
2130        listaods.ReplaceAll("AliAOD.root ","");
2131      }
2132      if(!(kSaveAOD&(1<<1))){
2133        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
2134        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
2135
2136      }
2137      if(!(kSaveAOD&(1<<2))){
2138        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2139        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2140      }
2141      if(!(kSaveAOD&(1<<3))){
2142        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2143        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2144      }
2145
2146      //
2147      plugin->SetDefaultOutputs(kFALSE);
2148      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2149      plugin->SetOutputFiles(outputFiles.Data());
2150    }
2151
2152    TString outputArchive;
2153    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
2154    listaods.ReplaceAll(" ", ",");
2155    listhists.ReplaceAll(" ", ",");
2156    if (listhists.Length()){
2157      outputArchive += " ";
2158      outputArchive += "root_archive.zip:";
2159      outputArchive += listhists;
2160      if (listaods.Length()){
2161        outputArchive += ",";
2162        outputArchive += listaods;
2163      }
2164      outputArchive += Form("@%s", kGridOutputStorages.Data());
2165    }
2166    else{
2167
2168      if (listaods.Length()){
2169        // we have only aod'ish output
2170        outputArchive += " ";
2171        outputArchive += "root_archive.zip:";
2172        outputArchive += listaods;
2173        outputArchive += Form("@%s", kGridOutputStorages.Data());
2174      }
2175      else{
2176        // no other outputs than std..
2177       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
2178      }
2179    }
2180
2181    plugin->SetDefaultOutputs(kFALSE);
2182    plugin->SetOutputArchive(outputArchive);
2183
2184
2185    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
2186    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
2187    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
2188    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
2189    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
2190    //   plugin->SetMaxInitFailed(5);
2191    // Optionally resubmit threshold.
2192    // plugin->SetMasterResubmitThreshold(90);
2193    // Optionally set time to live (default 30000 sec)
2194    plugin->SetTTL(54000); // 15h...
2195    // Optionally set input format (default xml-single)
2196    plugin->SetInputFormat("xml-single");
2197    // Optionally modify the name of the generated JDL (default analysis.jdl)
2198    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
2199    // Optionally modify the executable name (default analysis.sh)
2200    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
2201    // Optionally modify job price (default 1)
2202    plugin->SetPrice(1);
2203    // Optionally modify split mode (default 'se')
2204    plugin->SetSplitMode("se");
2205    return plugin;
2206 }
2207
2208 //______________________________________________________________________________
2209 void WriteConfig()
2210 {
2211 // Write train configuration in a file. The file name has the format:
2212 // train_[trainName]_ddMonthyyyy_time.C
2213    if (kUseDate) {
2214       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
2215       ifstream fdate("date.tmp");
2216       if (!fdate.is_open()) {
2217          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
2218          return;
2219       }
2220       const char date[64];
2221       fdate.getline(date,64);
2222       fdate.close();
2223       gSystem->Exec("rm date.tmp");
2224       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
2225    } else {
2226       kTrainName = Form("train_%s", kTrainName.Data());
2227    }
2228    TString cdir = gSystem->WorkingDirectory();
2229    gSystem->MakeDirectory(kTrainName);
2230    gSystem->ChangeDirectory(kTrainName);
2231    ofstream out;
2232    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
2233    if (out.bad()) {
2234       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
2235       return;
2236    }
2237    out << "{" << endl;
2238    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
2239    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
2240    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
2241    if (kProofUseAFPAR)
2242       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
2243    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
2244    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
2245    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
2246    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
2247    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
2248    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
2249    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
2250    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2251    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
2252    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
2253    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
2254    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
2255    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
2256    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
2257    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
2258    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
2259    out << "   kUseMC           = " << kUseMC << ";" << endl;
2260    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
2261    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
2262    out << "   kUseTR           = " << kUseTR << ";" << endl;
2263    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
2264    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
2265    out << "   // Analysis modules" << endl;
2266    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
2267    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
2268    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
2269    out << "   iJETAN          = " << iJETAN << ";" << endl;
2270    out << "// Configuration fot the wagons" << endl;
2271    out << "}" << endl;
2272    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
2273    gSystem->ChangeDirectory(cdir);
2274 }
2275
2276 //______________________________________________________________________________
2277 Bool_t LoadConfig(const char *filename)
2278 {
2279 // Read train configuration from file
2280    if (gSystem->AccessPathName(filename)) {
2281       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
2282       return kFALSE;
2283    }
2284    gROOT->ProcessLine(Form(".x %s", filename));
2285    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
2286    return kTRUE;
2287 }
2288
2289 Bool_t PatchJDL(){
2290   Printf(">>> Patching JDL");
2291   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2292   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
2293   TGridJDL *jdl = gridHandler->GetGridJDL();
2294   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
2295   gridHandler->WriteJDL(kFALSE);
2296   Printf("<<<  Patching JDL");
2297   return kTRUE;
2298 }
2299
2300 Bool_t PatchAnalysisMacro(){
2301   Printf(">>> Patching AnalysisMacro");
2302   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
2303
2304   ifstream in1;
2305   in1.open(Form("%s.C_tmp", kTrainName.Data()));
2306   char cLine[250];
2307   TString st;
2308   while(in1.getline(cLine,250)){
2309     st += cLine;
2310     st += "\n";
2311   }
2312   Int_t index= -1;
2313   index = st.Index("gSystem->Load(\"libPhysics\");");
2314   index += strlen("gSystem->Load(\"libPhysics\");");
2315   /*
2316     TObjArray *arr;
2317     TObjString *objstr;
2318     arr = anaLibs.Tokenize(" ");
2319     TIter next(arr);
2320
2321     add += "\n\n // added by CKB \n";
2322     while ((objstr=(TObjString*)next())){
2323       if(objstr->GetString().Contains("PWG3"))continue;
2324       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
2325     }
2326     delete arr;
2327     */
2328     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
2329   TString add = "";
2330
2331   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2332   add += "\n\n // added by CKB \n";
2333   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
2334   add += "\n gSystem->AddIncludePath(\"./\"); \n";
2335   add += "\n gSystem->SetFPEMask(); \n";
2336
2337
2338   if(gGrid&&kPluginAliRootVersion.Length()==0){
2339     /*
2340     add += "\n // Dirty hack for TRD reference data \n";
2341     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2342     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2343     add += "\"); \n";
2344     */
2345   }
2346
2347   add += "// BKC \n\n";
2348   st.Insert(index,add.Data());
2349
2350   if(kUseDebug){
2351     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2352   }
2353
2354   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2355     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
2356     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2357     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2358   }
2359
2360   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
2361     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
2362     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2363     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
2364   }
2365
2366   ofstream out;
2367   out.open(Form("%s.C", kTrainName.Data()));
2368   if (out.bad()) {
2369     return kFALSE;
2370   }
2371   out << st << endl;
2372   Printf("<<< Patching AnalysisMacro");
2373
2374
2375
2376
2377
2378   Printf(">>> Patching Merge Macro");
2379   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
2380
2381   ifstream in2;
2382   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
2383   TString st2;
2384   while(in2.getline(cLine,250)){
2385     st2 += cLine;
2386     st2 += "\n";
2387   }
2388   index = st2.Index("gSystem->Load(\"libPhysics\");");
2389   index += strlen("gSystem->Load(\"libPhysics\");");
2390   TString add2 = "";
2391   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
2392   if(gGrid&&kPluginAliRootVersion.Length()==0){
2393     /*
2394     add2 += "\n // Dirty hack for TRD reference data \n";
2395     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2396     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2397     add2 += "\"); \n";
2398     */
2399   }
2400   add2 += "// BKC \n\n";
2401   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2402   st2.Insert(index,add.Data());
2403
2404
2405   if(kUseDebug){
2406     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2407   }
2408
2409   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2410     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
2411     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2412     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2413   }
2414
2415   // do not exclude the extra files from merign, this is done explicitly in this train script
2416   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2417   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2418   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
2419
2420
2421   ofstream out2;
2422   out2.open(Form("%s_merge.C", kTrainName.Data()));
2423   if (out2.bad()) {
2424     return kFALSE;
2425   }
2426   out2 << st2 << endl;
2427   Printf("<<< Patching Merging Macro");
2428
2429
2430
2431   return kTRUE;
2432
2433 }