1 //===================== ANALYSIS TRAIN =========================================
2 // To use: copy this macro to your work directory, modify the global part to match
3 // your needs, then run root.
4 // root[0] .L AnalysisTrain.C
5 // Grid full mode as below (other modes: test, offline, submit, terminate)
6 // root[1] AnalysisTrainPWG-244Jets("grid", "full")
7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
8 // root[2] AnalysisTrainPWG4Jets("proof")
9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
10 // root[3] AnalysisTrainPWG4Jets("local")
11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
13 // If 'saveTrain' flag is set, the train will generate a directory name and run
14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
15 // One can replay at any time the train via:
16 // root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
18 // For Usage with fastjet run in "offline" first and then "submit"
19 // jdl and analysismacro are automatically patched after "offline" mode
21 // =============================================================================
22 // ### General Steering variables
23 // =============================================================================
24 //== general setup variables
25 TString kTrainName = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
26 TString kJobTag = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
32 Bool_t kUsePAR = kFALSE; // use par files for extra libs
33 Bool_t kUseCPAR = kFALSE; // use par files for common libs
34 Bool_t kFillAOD = kFALSE; // switch of AOD filling for on the fly analysis
35 Int_t kSaveAOD = 8; // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
36 //== general input and output variables
38 Int_t iAODanalysis = 1; // Analysis on input AOD's
39 Int_t iAODhandler = 1; // Analysis produces an AOD or dAOD's
40 Int_t iESDfilter = 0; // ESD to AOD filter (barrel + muon tracks)
41 Int_t iPhysicsSelection = 1; // ESD to AOD filter (barrel + muon tracks)
42 Bool_t useTender = kFALSE; // use tender wagon
43 Bool_t kUseKinefilter = kFALSE; // use Kinematics filter
44 Bool_t kUseMuonfilter = kFALSE; // use Kinematics filter
45 TString kCommonOutputFileName = "PWG4_JetTasksOutput.root";
46 TString kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
49 //== general process variables
51 // ### Other flags to steer the analysis
52 //==============================================================================
53 Bool_t kSkipTerminate = kTRUE; // Do not call Teminate
54 Bool_t kUseDate = kFALSE; // use date in train name
55 Bool_t kUseDebug = kTRUE; // activate debugging
56 Int_t kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
58 // const Int_t kUnset = -1;
59 // const Int_t kPrint = 0;
60 // const Int_t kInfo = 1000;
61 // const Int_t kWarning = 2000;
62 // const Int_t kError = 3000;
63 // const Int_t kBreak = 4000;
64 // const Int_t kSysError = 5000;
65 // const Int_t kFatal = 6000;
66 Int_t kUseSysInfo = 0; // activate debugging
67 Long64_t kNumberOfEvents = 1234567890; // number of events to process from the chain
68 Bool_t kUseMC = kTRUE; // use MC info
69 Bool_t kIsMC = kTRUE; // is MC info, if false it overwrites Use(AOD)MC
70 Bool_t kUseAODMC = kTRUE; // use MC infA
71 Bool_t kUseESDTags = kFALSE; // use ESD tags for selection
72 Bool_t kUseTR = kFALSE; // use track references
73 Bool_t kUseAODTags = kFALSE; // use AOD tags
74 Bool_t kSaveTrain = kFALSE; // save train configuration as:
77 // ### Analysis modules to be included. Some may not be yet fully implemented.
78 //==============================================================================
79 Int_t iJETAN = 1; // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
82 Int_t iPWG1QASym = 0; // Eva's QA task compiled on the fly...
83 Int_t iPWG4JetTasks = 0; // all jet tasks flag for lib laoding
84 Int_t iPWG4JetServices = 0; // jet spectrum analysis
85 Int_t iPWG4JetSpectrum = 0; // jet spectrum analysis
86 Int_t iPWG4JCORRAN = 0; // JCORRAN module
87 Int_t iPWG4UE = 0; // Underlying Event analysis
88 Int_t iPWG4LeadingUE = 0; // Underlying Event analysis
89 Int_t iPWG4CorrectionsUE = 0; // Underlying Event analysis
90 Int_t iPWG4TmpSourceSara = 0; // Underlying Event analysis not in svn
91 Int_t iPWG4Fragmentation = 0; // Official Fragmentation
92 Int_t iPWG4JetChem = 0; // Jet chemistry
93 Int_t iPWG4PtQAMC = 0; // Marta's QA tasks
94 Int_t iPWG4PtSpectra = 0; // Marta's QA tasks
95 Int_t iPWG4PtQATPC = 0; // Marta's QA tasks
96 Int_t iPWG4Cosmics = 0; // Marta's Cosmics Taks
97 Int_t iPWG4ThreeJets = 0; // Sona's thrust task
98 Int_t iPWG4KMeans = 0; // Andreas' KMeans task
99 Int_t iPWG4Cluster = 0; // CKB cluster task
100 Int_t iEMCUtilLibs = 0; // Flag to satisfy dependence on EMC utils
101 Int_t iPWG4PartCorrLibs = 0; // Gustavo's part corr analysis
102 Int_t iPWG4PartCorr = 0; // Gustavo's part corr analysis
103 Int_t iPWG4CaloQA = 0; // Gustavo's part corr analysis
104 Int_t iPWG4JetCorr = 0; // Paul's jet corr analysis
105 Int_t iPWG4Tagged = 0; // Gustavo's part corr analysis
106 Int_t iPWG4omega3pi = 0; // Omega to 3 pi analysis (PWG4)
107 Int_t iPWG4GammaConvLib = 0; // Gamma Conversio
108 Int_t iPWG4GammaConv = 0; // Gamma Conversio
109 Int_t iPWG4CaloConv = 0; // Gamma Conversio
110 Int_t kHighPtFilterMask = 16; // change depending on the used AOD Filter
111 TString kDeltaAODJetName = "AliAOD.Jets.root";
112 TString kDeltaAODJCORRANName = "AliAOD.JCORRAN.root";
113 TString kDeltaAODPartCorrName = "deltaAODPartCorr.root";
116 //==============================================================================
117 // ### PROOF Steering varibales
118 //==============================================================================
119 //== proof setup variables
120 TString kProofCluster = "alicecaf.cern.ch";
121 Bool_t kProofUseAFPAR = kFALSE; // use AF special par file
122 TString kProofAFversion = "AF-v4-17";
123 //== proof input and output variables
124 TString kProofDataSet = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
125 Bool_t kProofSaveToAlien = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
126 TString kProofOutdir = "";
127 Bool_t kProofClearPackages = kFALSE;
128 Int_t kProofEvents = 10000;
129 Int_t kProofOffset = 0;
130 //== proof process variables
133 //==============================================================================
134 // ### Grid plugin Steering varibiables
135 //==============================================================================
136 //== grid plugin setup variables
137 Bool_t kPluginUse = kTRUE; // do not change
138 Bool_t kPluginUseProductionMode = kFALSE; // use the plugin in production mode
139 TString kPluginRootVersion = "v5-27-06"; // *CHANGE ME IF MORE RECENT IN GRID*
140 TString kPluginAliRootVersion = "v4-19-15-AN"; // *CHANGE ME IF MORE RECENT IN GRID*
141 Bool_t kPluginMergeViaJDL = kTRUE; // merge via JDL
142 Bool_t kPluginFastReadOption = kFALSE; // use xrootd tweaks
143 Bool_t kPluginOverwriteMode = kTRUE; // overwrite existing collections
144 Int_t kPluginOutputToRunNumber = 1; // write the output to subdirs named after run number
145 // TString kPluginExecutableCommand = "root -b -q";
146 TString kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
148 // == grid plugin input and output variables
149 TString kGridDatadir = "/alice/sim/PDC_08b/LHC09a1/AOD/";
150 Int_t kGridMaxRunsFromList = 999999999;
151 TString kGridLocalRunList = "";
152 TString kGridOutdir = ""; // AliEn output directory. If blank will become output_<kTrainName>
153 TString kGridDataSet = ""; // sub working directory not to confuse different run xmls
154 Int_t kGridRunRange[2] = {0, -1}; // Set the run range
155 TString kGridRunPattern = "%03d"; // important for leading zeroes!!
156 TString kGridPassPattern = "";
157 TString kGridExtraFiles = ""; // files that will be added to the input list in the JDL...
158 Int_t kGridMaxMergeFiles = 12; // Number of files merged in a chunk grid run range
159 TString kGridMergeExclude = "AliAOD.root"; // Files that should not be merged
160 TString kGridOutputStorages = "disk=2"; // Make replicas on the storages
161 // == grid process variables
162 Int_t kGridRunsPerMaster = 100; // Number of runs per master job
163 Int_t kGridFilesPerJob = 100; // Maximum number of files per job (gives size of AOD)
165 //==============================================================================
166 // ### Local Steering variables
167 //==============================================================================
168 //== local setup variables
169 //== local input and output variables
170 TString kLocalXMLDataset = ""; // Change local xml dataset for local interactive analysis
171 TString kLocalDataList = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
172 // == local process variables
178 TString anaPars = "";
179 TString anaLibs = "";
180 TString anaLibsExtra = "";
181 TString anaSources = "";
182 // Function signatures
183 class AliAnalysisAlien;
185 //______________________________________________________________________________
186 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
187 const char *plugin_mode="",
188 const char *config_file="",Int_t iOffset = 0)
190 // Main analysis train macro. If a configuration file is provided, all parameters
191 // are taken from there but may be altered by CheckModuleFlags.
193 // these flag may be needed by the config file
194 kPluginMode = plugin_mode;
196 if (strlen(config_file) && !LoadConfig(config_file)) return;
198 if(iOffset)kProofOffset = iOffset;
199 TString smode(analysis_mode);
201 if (kSaveTrain)WriteConfig();
202 // Check compatibility of selected modules
203 CheckModuleFlags(smode);
204 // gROOT->ProcessLine(".trace");
206 printf("==================================================================\n");
207 printf("=========== RUNNING ANALYSIS TRAIN %s IN %s MODE ==========\n", kTrainName.Data(),smode.Data());
208 printf("==================================================================\n");
209 printf("= Configuring analysis train for: =\n");
210 if (iAODanalysis) printf("= AOD analysis =\n");
211 else printf("= ESD analysis =\n");
212 if (iPhysicsSelection) printf("= Physics selection =\n");
213 if (useTender) printf("= Using tender =\n");
214 if (iESDfilter) printf("= ESD filter =\n");
215 if (iJETAN) printf("= Jet analysis =\n");
216 printf("==================================================================\n");
218 char *printMask = ":: %20s %10d\n";
219 printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
220 printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
221 printf(printMask,"MC truth", (UInt_t)kUseMC);
222 printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
223 printf(printMask,"track refs", (UInt_t)kUseTR);
224 printf(printMask,"tags", (UInt_t)kUseESDTags);
225 printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
226 printf(printMask,"debugging", (UInt_t)kUseDebug);
227 printf(printMask,"PAR files", (UInt_t)kUsePAR);
228 printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
229 printf(printMask,"PWG1 QA sym", iPWG1QASym);
230 printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
231 printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
232 printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
233 printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
234 printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
235 printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
236 printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
237 printf(printMask,"PWG4 UE",iPWG4UE);
238 printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
239 printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
240 printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
241 printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
242 printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
243 printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
244 printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
245 printf(printMask,"PWG4 KMeans",iPWG4KMeans);
246 printf(printMask,"PWG4 Cluster",iPWG4Cluster);
247 printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
248 printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
249 printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
250 printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
251 printf(printMask,"PWG4 Tagged",iPWG4Tagged);
252 printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
253 printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
254 printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
255 printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
257 //==========================================================================
258 // Connect to back-end system
259 if (!Connect(smode)) {
260 ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
264 // Load common libraries and set include path
265 if (!LoadCommonLibraries(smode)) {
266 ::Error("AnalysisTrain", "Could not load common libraries");
272 // Make the analysis manager and connect event handlers
273 AliAnalysisManager *mgr = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
274 if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
275 if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
277 if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
278 if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
279 mgr->SetSkipTerminate(kSkipTerminate);
281 // Load analysis specific libraries
282 if (!LoadAnalysisLibraries(smode)) {
283 ::Error("AnalysisTrain", "Could not load analysis libraries");
287 // Create input handler (input container created automatically)
290 AliAODInputHandler *aodH = new AliAODInputHandler();
291 mgr->SetInputEventHandler(aodH);
292 if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
293 if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
296 AliESDInputHandler *esdHandler = new AliESDInputHandler();
297 if (kUseESDTags) esdHandler->SetReadTags();
298 esdHandler->SetReadFriends(kFALSE);
299 mgr->SetInputEventHandler(esdHandler);
300 // if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
304 // Monte Carlo handler
305 if (kUseMC && !iAODanalysis) {
306 AliMCEventHandler* mcHandler = new AliMCEventHandler();
307 mgr->SetMCtruthEventHandler(mcHandler);
308 mcHandler->SetReadTR(kUseTR);
310 // AOD output container, created automatically when setting an AOD handler
312 // AOD output handler
313 AliAODHandler* aodHandler = new AliAODHandler();
314 aodHandler->SetOutputFileName("AliAOD.root");
315 aodHandler->SetFillAODforRun(kFillAOD);
317 mgr->SetOutputEventHandler(aodHandler);
321 // aodHandler->SetCreateNonStandardAOD();
322 // if (iJETAN)aodHandler->SetOutputFileName(kDeltaAODJetName.Data());
324 AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
325 cout_aod->SetSpecialOutput();
327 // Debugging if needed
330 mgr->SetDebugLevel(3);
333 mgr->RegisterExtraFile("syswatch.root");
334 if(kGridMergeExclude.Length())kGridMergeExclude += " ";
335 kGridMergeExclude += "syswatch.root";
338 AliLog::SetGlobalLogLevel(AliLog::kError);
342 //==========================================================================
343 // Create the chain. In this example it is created only from ALIEN files but
344 // can be done to work in batch or grid mode as well.
345 TChain *chain = CreateChain(smode, plugin_mode);
347 //==========================================================================
348 // Load the tasks configuration macros for all wagons. These files are supposed now to be
349 // in the current workdir, but in AliEn they will be in the file catalog,
350 // mapped from AliRoot and pecified in the jdl input list.
352 // For now connection to top input container and common AOD output container
353 // is done in this macro, but in future these containers will be connected
354 // from each task configuration macro.
357 // Tender and supplies. Needs to be called for every event.
360 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
361 AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
362 // tender->SelectCollisionCandidates();
363 tender->SetDebugLevel(2);
368 if(iPhysicsSelection && !iAODanalysis){
369 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
370 AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,kTRUE,kTRUE); // last flag also adds information on
373 if (iESDfilter && !iAODanalysis) {
374 // ESD filter task configuration.
375 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
376 AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
377 taskesdfilter->SetEnableFillAOD(kFALSE);
379 mgr->RegisterExtraFile("pyxsec_hists.root");
380 if(kGridMergeExclude.Length())kGridMergeExclude += " ";
381 kGridMergeExclude += "pyxsec_hists.root";
388 AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
389 mgr->AddTask(tagTask);
390 AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag", TTree::Class(),
391 AliAnalysisManager::kOutputContainer, "AOD.tag.root");
392 mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
393 mgr->ConnectOutput(tagTask, 1, coutTags);
398 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
399 AliAnalysisTaskJets *taskjets = 0;
400 if(iJETAN&1)taskjets = AddTaskJets(kHighPtFilterMask);
402 UInt_t selection = 0;
404 selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time
405 selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
408 selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time;
409 selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
411 AddTaskJetsDelta(kDeltaAODJetName.Data(),kHighPtFilterMask,kUseAODMC,selection);
412 AddTaskJets("AOD","FASTKT",0.2,kHighPtFilterMask);
414 if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
418 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
419 AliAnalysisTaskJetCluster *taskCl = 0;
421 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.4,0,1); // this one is for the background jets
422 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.5,0,1); // this one is for the background jets
423 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.6,0,1); // this one is for the background jets
424 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.7,0,1); // this one is for the background jets
426 if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
429 UInt_t selection = 0;
430 if(!iAODanalysis) selection = 0xffffff;
431 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
432 selection&=~(1<<4); // exluded R = .04 already the dafault
433 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"KT",selection);
436 UInt_t selection = 0;
438 selection = 0xffffff;
439 selection &= ~(1<<1)&~(1<<3)&~(1<<5)&~(1<<7)&~(1<<9);
441 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
442 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"ANTIKT",selection);
443 // AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"ANTIKT",0.4,0,1);
449 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
450 AliAnalysisTaskDiJets *taskdijets = 0;
451 if(iDIJETAN&1)taskdijets = AddTaskDiJets();
452 if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
454 taskdijets = AddTaskDiJets("jetsAOD_CDF07");
455 taskdijets = AddTaskDiJets("jetsAOD_DA07");
456 taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
457 taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
458 taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
459 taskdijets = AddTaskDiJets("jetsAOD_UA107");
464 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
465 AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
466 if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
471 if(iPWG4TmpSourceSara){
472 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
473 AliAnalysisTaskEta *taskEta = AddTaskEta();
474 if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
477 if(iPWG4Fragmentation){
478 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
479 AliAnalysisTaskFragmentationFunction *taskFrag = 0;
481 taskFrag = AddTaskFragmentationFunction(1<<1,kHighPtFilterMask);
482 taskFrag = AddTaskFragmentationFunction(1<<2,kHighPtFilterMask);
483 taskFrag = AddTaskFragmentationFunction(1<<3,kHighPtFilterMask);
484 taskFrag = AddTaskFragmentationFunction(1<<5,kHighPtFilterMask);
485 taskFrag = AddTaskFragmentationFunction(1<<11); // w/o acceptance cuts
486 taskFrag = AddTaskFragmentationFunction(1<<12); // with acceptance cuts
488 taskFrag = AddTaskFragmentationFunction(1<<21); // w/o acceptance cuts
489 taskFrag = AddTaskFragmentationFunction(1<<22); // with acceptance cuts
493 taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask);
494 taskFrag = AddTaskFragmentationFunction(1<<10,kHighPtFilterMask);
495 taskFrag = AddTaskFragmentationFunction(1<<20,kHighPtFilterMask);
498 if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
503 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
504 AliAnalysisTask *taskChem = AddTaskJetChem();
505 if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
509 if(iPWG4JetServices){
510 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
511 AliAnalysisTaskJetServices *taskjetServ = 0;
512 taskjetServ = AddTaskJetServices();
513 if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
514 if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
515 else taskjetServ->SetRunRange(110000,160000);
516 taskjetServ->SetMCData(kIsMC);
517 taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
518 taskjetServ->SetDebugLevel(0);
521 if(iPWG4JetSpectrum){
522 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
523 AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
524 if(iPWG4JetSpectrum&1){
525 taskjetSpectrum = AddTaskJetSpectrum2("jets","","",kHighPtFilterMask,iPhysicsSelection);
527 // taskjetSpectrum = AddTaskJetSpectrum2("jets","tracks32",32,iPhysicsSelection); // tmp hack to give it a different name
528 // taskjetSpectrum = AddTaskJetSpectrum2("jets","64",64,iPhysicsSelection);
530 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","clustersAOD_ANTIKT04","",kHighPtFilterMask,iPhysicsSelection);
534 UInt_t eventSelection = AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
535 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
536 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
537 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
539 eventSelection = AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
540 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
541 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
543 eventSelection = AliAnalysisHelperJetTasks::kNone;
544 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
545 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
549 UInt_t eventSelection = AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
550 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
551 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
553 eventSelection = AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
554 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
555 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
558 if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
559 // taskjetSpectrum->SetDebugLevel(1);
562 if(iPWG4JetSpectrum&2){
563 UInt_t selection = 0;
565 selection = 0xffffff;
566 // switch off 07 radii
567 selection &= ~(1<<6)&~(1<<11)&~(1<<12)&~(1<<13)&~(1<<14);
569 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
570 AddTaskJetSpectrum2Delta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,selection,0,kTRUE);
574 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
575 AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
576 if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
578 if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
583 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
584 AliAnalysisTaskUE *taskUE = 0;
585 if(iPWG4UE&1)taskUE = AddTaskUE();
587 taskUE =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
588 // taskUE =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
589 taskUE =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
590 // taskUE =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
591 taskUE =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
592 taskUE =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
593 // taskUE =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
594 taskUE =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
595 taskUE =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
598 if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
602 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
603 AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
604 if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
605 // taskLeadingUE->SetFilterBit(64);
609 if(iPWG4CorrectionsUE){
610 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
611 AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
612 if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
613 if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
617 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
618 AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
619 if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
622 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
623 AliPWG4HighPtQAMC *taskQAMC = 0;
625 if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
626 if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
628 if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
632 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
633 AliPWG4HighPtQATPConly *taskQATPC = 0;
634 if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
635 if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
637 if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
641 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
643 AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
644 taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
646 if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
651 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
652 AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra(kGridDataSet.Data());
653 if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
656 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
657 AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
658 if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
662 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
663 AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
664 if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
665 AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
666 if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
667 if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
671 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
672 AliAnalysisTaskParticleCorrelation *taskcaloQA = AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
673 if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
674 // if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
678 // using namespace JetCorrelHD;
679 TString cdir = gSystem->WorkingDirectory();
680 gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
681 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
682 AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
683 gSystem->ChangeDirectory(cdir);
684 if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel cannot run for this train conditions - EXCLUDED");
688 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
689 AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
690 taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
691 if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons cannot run for this train conditions - EXCLUDED");
694 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
695 AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
696 if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
697 for these train conditions - EXCLUDED");
700 // PWG4 gamma conversion analysis
701 if (iPWG4GammaConv) {
702 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
703 TString cdir = gSystem->WorkingDirectory();
704 gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
705 // TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
706 // TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
707 // TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
708 TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
709 // TString kGCAnalysisCutSelectionId="9003562000100310";
710 // TString kGCAnalysisCutSelectionId="9003562000100312";
711 // gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
712 if(!kIsMC)gcArguments += " -mc-off";
713 AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
714 gSystem->ChangeDirectory(cdir);
715 taskGammaConversion->SelectCollisionCandidates();
716 if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
720 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
721 AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
722 if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
727 //==========================================================================
728 // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
732 AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
733 AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
736 if (mgr->InitAnalysis()) {
738 // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
739 if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
740 TString alien_workdir = gGrid->GetHomeDirectory();
741 if (iAODanalysis) alien_workdir += "analysisAOD";
742 else alien_workdir += "analysisESD";
743 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
744 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
745 printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
746 alien_workdir.Data(),gridhandler->GetGridOutputDir());
749 dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
750 if(AliAnalysisAlien::FileExists(dest.Data())){
751 // Printf("%s exist on grid removing...",dest.Data());
752 // gGrid->Rm(dest.Data());
754 TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
758 dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
759 if(AliAnalysisAlien::FileExists(dest.Data())){
760 // Printf("%s exist on grid removing...",dest.Data());
761 // gGrid->Rm(dest.Data());
763 TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
766 dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
767 if(AliAnalysisAlien::FileExists(dest.Data())){
768 Printf("%s exist on grid removing...",dest.Data());
769 gGrid->Rm(dest.Data());
771 TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
772 gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
774 AliLog::SetGlobalLogLevel(AliLog::kError);
775 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
776 TFile * fM = TFile::Open("manager_local.root","RECREATE");
781 // grmpf, aliroot error handler overwrites root
782 gErrorIgnoreLevel = kErrorIgnoreLevel;
783 if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
784 StartAnalysis(smode, chain);
785 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
786 for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
790 if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
791 // Offline mode path files
793 PatchAnalysisMacro();
796 if (kSaveTrain && smode=="GRID") {
797 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
798 TString alien_workdir = gGrid->GetHomeDirectory();
799 if (iAODanalysis) alien_workdir += "analysisAOD";
800 else alien_workdir += "analysisESD";
801 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
802 // kGridOutdir = gridhandler->GetGridOutputDir();
803 printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
804 alien_workdir.Data());
805 if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
806 gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
807 if (strcmp(plugin_mode, "test"))
808 TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
813 //______________________________________________________________________________
814 void StartAnalysis(const char *mode, TChain *chain) {
817 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
818 if (!strcmp(mode, "LOCAL")) imode = 0;
819 if (!strcmp(mode, "PROOF")) imode = 1;
820 if (!strcmp(mode, "GRID")) imode = 2;
824 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
827 mgr->StartAnalysis(mode, chain,kNumberOfEvents);
830 if (!kProofDataSet.Length()) {
831 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
834 mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
838 if (!mgr->GetGridHandler()) {
839 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
842 mgr->StartAnalysis("grid",chain,kNumberOfEvents);
845 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
848 mgr->StartAnalysis(mode, chain);
849 mgr->StartAnalysis(mode, chain,kNumberOfEvents);
855 //______________________________________________________________________________
856 void CheckModuleFlags(const char *mode) {
857 // Checks selected modules and insure compatibility
859 if (!strcmp(mode, "LOCAL")) imode = 0;
860 if (!strcmp(mode, "PROOF")) imode = 1;
861 if (!strcmp(mode, "GRID")) imode = 2;
865 kPluginAliRootVersion = ""; // NO aliroot if we use CPAR
870 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
875 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
881 // switch off anthin related to MC
890 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
892 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
895 kUseAODTags = kFALSE;
897 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
899 if (iPhysicsSelection)
900 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
901 iPhysicsSelection = 0;
904 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
908 // Disable tasks that do not work yet on AOD data
909 if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
911 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
913 if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
915 if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
918 if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
920 if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
922 if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
924 if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
926 if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
928 if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
931 ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
933 if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
934 if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
942 if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
943 kUseKinefilter = kFALSE;
944 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
946 if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
947 iPWG4CorrectionsUE = 0;
950 if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
957 kUseKinefilter = kFALSE;
958 kUseMuonfilter = kFALSE;
961 iPWG4JetSpectrum = iPWG4UE = iPWG4CorrectionsUE = iPWG4ThreeJets = iDIJETAN = 0;
964 iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4JetChem||iPWG4Fragmentation;
965 iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
966 iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
969 iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib;
970 iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
972 if (iESDfilter) {iAODhandler=1;}
973 if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
974 if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
980 //______________________________________________________________________________
981 Bool_t Connect(const char *mode) {
982 // Connect <username> to the back-end system.
984 if (!strcmp(mode, "LOCAL")) imode = 0;
985 if (!strcmp(mode, "PROOF")) imode = 1;
986 if (!strcmp(mode, "GRID")) imode = 2;
987 TString username = gSystem->Getenv("alien_API_USER");
992 if (!username.Length()) {
993 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
994 1. Have called: alien-token-init <username>\n \
995 2. Have called: >source /tmp/gclient_env_$UID");
998 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
999 username.Data(), kProofCluster.Data());
1000 gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1001 // TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1002 TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1004 if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1005 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1008 if(kProofClearPackages)gProof->ClearPackages();
1010 if(kProofSaveToAlien){
1011 TGrid::Connect("alien://");
1013 TString homedir = gGrid->GetHomeDirectory();
1014 TString workdir = homedir + kTrainName;
1015 if (!gGrid->Cd(workdir)) {
1017 if (gGrid->Mkdir(workdir)) {
1018 gGrid->Cd(kTrainName);
1019 ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1022 gGrid->Mkdir("proof_output");
1023 gGrid->Cd("proof_output");
1024 kProofOutdir = Form("alien://%s", gGrid->Pwd());
1029 if (!username.Length()) {
1030 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1031 1. Have called: alien-token-init <username>\n \
1032 2. Have called: >source /tmp/gclient_env_$UID");
1035 if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1036 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1037 "When using the AliEn plugin it is preferable to define the \
1038 variable alien_CLOSE_SE in your environment.");
1041 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1043 TGrid::Connect("alien://");
1044 if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1047 ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1050 ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1054 //______________________________________________________________________________
1055 Bool_t LoadCommonLibraries(const char *mode)
1057 // Load common analysis libraries.
1059 if (!strcmp(mode, "LOCAL")) imode = 0;
1060 if (!strcmp(mode, "PROOF")) imode = 1;
1061 if (!strcmp(mode, "GRID")) imode = 2;
1062 if (!gSystem->Getenv("ALICE_ROOT")) {
1063 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1066 Bool_t success = kTRUE;
1068 gSystem->Load("libTree.so");
1069 gSystem->Load("libGeom.so");
1070 gSystem->Load("libVMC.so");
1071 gSystem->Load("libPhysics.so");
1073 // Load framework classes. Par option ignored here.
1078 success &= LoadLibrary("STEERBase", mode, kTRUE);
1079 success &= LoadLibrary("ESD", mode, kTRUE);
1080 success &= LoadLibrary("AOD", mode, kTRUE);
1081 success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1082 success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1083 success &= LoadLibrary("CORRFW", mode, kTRUE);
1085 success &= LoadLibrary("libSTEERBase.so", mode);
1086 success &= LoadLibrary("libESD.so", mode);
1087 success &= LoadLibrary("libAOD.so", mode);
1088 success &= LoadLibrary("libANALYSIS.so", mode);
1089 success &= LoadLibrary("libANALYSISalice.so", mode);
1090 success &= LoadLibrary("libCORRFW.so", mode);
1091 gROOT->ProcessLine(".include $ALICE_ROOT/include");
1096 if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1098 success &= LoadLibrary("STEERBase", mode);
1099 success &= LoadLibrary("ESD", mode);
1100 success &= LoadLibrary("AOD", mode);
1101 success &= LoadLibrary("ANALYSIS", mode);
1102 success &= LoadLibrary("ANALYSISalice", mode);
1103 success &= LoadLibrary("CORRFW", mode);
1105 ires = gProof->EnablePackage(kProofAFversion);
1106 if (ires<0) success = kFALSE;
1107 success &= LoadLibrary("CORRFW", mode);
1111 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1115 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: SUCCESS");
1116 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1117 gSystem->GetIncludePath());
1119 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: FAILED");
1125 //______________________________________________________________________________
1126 Bool_t LoadAnalysisLibraries(const char *mode)
1128 // Load common analysis libraries.
1129 Bool_t success = kTRUE;
1131 if (!LoadLibrary("TENDER", mode, kTRUE) ||
1132 !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1136 if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1137 !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1142 // this part needs some rework in case we do not need the fastjed finders for processing
1143 if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1144 if (!strcmp(mode, "PROOF")){
1145 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1146 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1147 // problem when loading siscone copiled with different gcc version??
1148 // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1149 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1152 if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1153 if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1154 if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1155 if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1158 // par files plus FASTJET needs some extra work... need to change
1159 // the loading sequence in the auto generated .C file
1160 if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1161 if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1162 if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1163 if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1165 if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1168 if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1172 if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1174 if(iPWG4TmpSourceSara){
1175 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1176 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1181 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1182 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskJetChem.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1187 if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1188 !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1191 if (iPWG4PartCorrLibs) {
1192 if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1193 !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1196 // PWG4 particle correlations
1197 if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1200 if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1202 if (iPWG4omega3pi) {
1203 if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1205 if (iPWG4GammaConvLib) {
1206 if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1209 ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries: SUCCESS");
1213 //______________________________________________________________________________
1214 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1216 // Load a module library in a given mode. Reports success.
1219 TString smodule(module);
1220 if (!strcmp(mode, "LOCAL")) imode = 0;
1221 if (!strcmp(mode, "PROOF")) imode = 1;
1222 if (!strcmp(mode, "GRID")) imode = 2;
1223 TString mod(module);
1224 if (!mod.Length()) {
1225 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1228 // If a library is specified, just load it
1229 if (smodule.EndsWith(".so")) {
1230 mod.Remove(mod.Index(".so"));
1231 result = gSystem->Load(mod);
1233 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1236 if (rec) anaLibs += Form("%s.so ",mod.Data());
1237 if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1240 // Check if the library is already loaded
1241 if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1247 result = SetupPar(module);
1248 if (rec) anaPars += Form("%s.par ", module);
1250 result = gSystem->Load(Form("lib%s.so", module));
1251 if (rec) anaLibs += Form("lib%s.so ", module);
1255 if(!gSystem->AccessPathName(module)){
1256 ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1257 gSystem->Exec(Form("rm -rf %s",module));
1259 result = gProof->UploadPackage(module);
1261 result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1263 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1267 result = gProof->EnablePackage(module);
1273 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1281 //______________________________________________________________________________
1282 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1284 // Load a module library in a given mode. Reports success.
1287 if (!strcmp(mode, "LOCAL")) imode = 0;
1288 if (!strcmp(mode, "PROOF")) imode = 1;
1289 if (!strcmp(mode, "GRID")) imode = 2;
1290 TString ssource(source);
1291 TString basename = gSystem->BaseName(ssource.Data());
1292 if (!ssource.Length()) {
1293 ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1296 // we have a source code so compile it
1297 if (ssource.EndsWith(".cxx")) {
1298 // need to copy it here other wise the path is also used on grid...
1299 ssource.Remove(ssource.Index(".cxx"));
1300 basename.Remove(basename.Index(".cxx"));
1301 Printf("LoadSources:: Copying... path %s{cxx,h}",ssource.Data());
1302 gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1303 gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1305 // only needed for local compilation, in grid and proof mode
1306 // the task headers are uploaded
1307 // path.Remove(path.Index(gSystem->BaseName(path.Data())));
1308 // Printf("LoadSources:: Including path %s",path.Data());
1309 // if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1310 Printf("LoadSources:: Loading... path %s",basename.Data());
1313 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1316 result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1319 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1321 // what we want to compile
1322 anaSources += Form("%s.cxx ",basename.Data());
1323 // what we need as input...
1324 anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1332 ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1339 //______________________________________________________________________________
1340 TChain *CreateChain(const char *mode, const char *plugin_mode)
1342 // Create the input chain
1344 if (!strcmp(mode, "LOCAL")) imode = 0;
1345 if (!strcmp(mode, "PROOF")) imode = 1;
1346 if (!strcmp(mode, "GRID")) imode = 2;
1347 TChain *chain = NULL;
1352 if (!kLocalXMLDataset.Length()) {
1354 chain = new TChain("aodTree");
1357 in.open(kLocalDataList.Data());
1360 if (line.Length() == 0) continue;
1361 // cout << " line = " << line << endl;
1362 chain->Add(line.Data());
1366 chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1369 if (!kLocalXMLDataset.Length()) {
1371 chain = new TChain("esdTree");
1374 in.open(kLocalDataList.Data());
1377 if (line.Length() == 0) continue;
1378 cout << " line = " << line << endl;
1379 chain->Add(line.Data());
1383 chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1391 // AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1392 // AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1394 TString treeName = "esdTree";
1395 if (iAODanalysis) treeName = "aodTree";
1396 chain = CreateChainSingle("wn.xml", treeName);
1401 if (chain && chain->GetNtrees()) return chain;
1405 //______________________________________________________________________________
1406 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1408 printf("*******************************\n");
1409 printf("*** Getting the ESD Chain ***\n");
1410 printf("*******************************\n");
1411 TAlienCollection * myCollection = TAlienCollection::Open(xmlfile);
1413 if (!myCollection) {
1414 ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1418 TChain* chain = new TChain(treeName);
1419 myCollection->Reset() ;
1420 while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1425 //______________________________________________________________________________
1426 Int_t SetupPar(char* pararchivename)
1428 if (!pararchivename || !strlen(pararchivename)) return -1;
1429 char processline[1024];
1430 if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1431 if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1432 ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1433 TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1434 Form("%s.par",pararchivename));
1436 ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1440 if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1441 gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1443 TString ocwd = gSystem->WorkingDirectory();
1444 if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1446 // check for BUILD.sh and execute
1447 if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1448 printf("*******************************\n");
1449 printf("*** Building PAR archive ***\n");
1450 printf("*******************************\n");
1451 if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1452 Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1457 // check for SETUP.C and execute
1458 if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1459 printf("*******************************\n");
1460 printf("*** Setup PAR archive ***\n");
1461 printf("*******************************\n");
1462 gROOT->Macro("PROOF-INF/SETUP.C");
1464 if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1468 //______________________________________________________________________________
1469 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1471 // Check if user has a valid token, otherwise make one. This has limitations.
1472 // One can always follow the standard procedure of calling alien-token-init then
1473 // source /tmp/gclient_env_$UID in the current shell.
1474 // if (!AliAnalysisGrid::CreateToken()) return NULL;
1475 AliAnalysisAlien *plugin = new AliAnalysisAlien();
1476 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1477 plugin->SetRunMode(plugin_mode);
1478 if (kPluginUseProductionMode) plugin->SetProductionMode();
1479 plugin->SetJobTag(kJobTag);
1480 plugin->SetNtestFiles(1);
1481 // plugin->SetPreferedSE("ALICE::NIHAM::File");
1482 // Set versions of used packages
1483 plugin->SetAPIVersion("V1.1x");
1484 // plugin->SetAPIVersion("V1.0x");
1485 // plugin->SetAPIVersion("V2.4");
1486 plugin->SetROOTVersion(kPluginRootVersion);
1487 plugin->SetAliROOTVersion(kPluginAliRootVersion);
1488 // Declare input data to be processed.
1489 // Method 1: Create automatically XML collections using alien 'find' command.
1490 // Define production directory LFN
1491 plugin->SetGridDataDir(kGridDatadir.Data());
1492 // Set data search pattern
1493 if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
1494 // else plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1495 else plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
1496 // ...then add run numbers to be considered
1497 // plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1498 for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1499 Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1500 plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1503 if(kGridLocalRunList.Length()>0){
1505 in1.open(kGridLocalRunList.Data());
1513 if ( (c >= '0') && (c <= '9') )
1517 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1518 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1523 in1.getline(cLine,250);
1531 // just use run numbers, negatives will be excluded
1534 if(iRun>=0&&(nRun<kGridMaxRunsFromList)){
1535 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1536 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1540 Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1545 // Method 2: Declare existing data files (raw collections, xml collections, root file)
1546 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1547 // XML collections added via this method can be combined with the first method if
1548 // the content is compatible (using or not tags)
1549 // plugin->AddDataFile("tag.xml");
1550 // plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1551 // Define alien work directory where all files will be copied. Relative to alien $HOME.
1552 TString alien_workdir = "";
1554 if (iAODanalysis) alien_workdir += "analysisAOD";
1555 else alien_workdir += "analysisESD";
1556 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1557 plugin->SetGridWorkingDir(alien_workdir.Data());
1559 // Declare alien output directory. Relative to working directory.
1560 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1561 plugin->SetGridOutputDir(kGridOutdir);
1563 // Add external packages
1564 if (iJETAN||iDIJETAN) {
1565 plugin->AddExternalPackage("boost::v1_43_0");
1566 plugin->AddExternalPackage("cgal::v3.6");
1567 plugin->AddExternalPackage("fastjet::v2.4.2");
1571 // set extra libs before par file compilation
1572 anaLibs += kGridExtraFiles;
1573 anaLibs = anaLibs.Strip();
1574 Printf("anaLibs %s",anaLibs.Data());
1575 Printf("anaLibsExtra %s",anaLibsExtra.Data());
1577 if (anaLibs.Length()) plugin->SetAdditionalLibs(anaLibs.Data());
1578 if (anaLibsExtra.Length()) plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
1580 TString ana_sources = "";
1581 TString ana_add = "";
1582 if (kUsePAR && anaPars.Length()) {
1583 printf("%s\n", anaPars.Data());
1586 arr = anaPars.Tokenize(" ");
1588 while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1592 // Declare the analysis source files names separated by blancs. To be compiled runtime
1593 // using ACLiC on the worker nodes.
1594 ana_sources = anaSources.Strip();
1595 // Declare all libraries (other than the default ones for the framework. These will be
1596 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1598 if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1599 plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
1600 // Declare the output file names separated by blancs.
1601 // (can be like: file.root or file.root@ALICE::Niham::File)
1602 plugin->SetMergeExcludes(kGridMergeExclude);
1603 plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1604 plugin->SetNrunsPerMaster(kGridRunsPerMaster);
1605 plugin->SetMergeViaJDL(kPluginMergeViaJDL);
1606 // Use fastread option
1607 plugin->SetFastReadOption(kPluginFastReadOption);
1608 // UseOverwrite mode
1609 plugin->SetOverwriteMode(kPluginOverwriteMode);
1610 // Optionally define the files to be archived.
1611 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
1612 plugin->SetOutputToRunNo(kPluginOutputToRunNumber); // write the output to subdirs named after run number
1614 // Put default output files to archive
1615 TString listhists = "";
1616 TString listaods = "";
1617 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1618 TIter next(mgr->GetOutputs());
1619 AliAnalysisDataContainer *output;
1620 while ((output=(AliAnalysisDataContainer*)next())) {
1621 const char *filename = output->GetFileName();
1622 if (!(strcmp(filename, "default"))) {
1623 if (!mgr->GetOutputEventHandler()) continue;
1624 filename = mgr->GetOutputEventHandler()->GetOutputFileName();
1625 if (listaods.Length()) listaods += " ";
1626 listaods += filename;
1628 if(!listhists.Contains(filename)){
1629 if (listhists.Length()) listhists += " ";
1630 listhists += filename;
1635 if (mgr->GetExtraFiles().Length()) {
1636 if (listaods.Length()) listaods += " ";
1637 listaods += mgr->GetExtraFiles();
1640 // if we do not fill the aod we do not need to store it
1641 // kGridMergeExclude = listaods;
1644 TString outputFiles = "";
1645 outputFiles += mgr->GetExtraFiles();
1646 if (listhists.Length()) outputFiles += " ";
1647 outputFiles += listhists;
1648 plugin->SetDefaultOutputs(kFALSE);
1649 Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1651 // no harm done when we try to remove something that is not there :)
1652 if(!(kSaveAOD&(1<<0))){
1653 outputFiles.ReplaceAll("AliAOD.root ","");
1654 listaods.ReplaceAll("AliAOD.root ","");
1656 if(!(kSaveAOD&(1<<1))){
1657 if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
1658 if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
1661 if(!(kSaveAOD&(1<<2))){
1662 if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1663 if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1665 if(!(kSaveAOD&(1<<3))){
1666 if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1667 if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1671 Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1672 plugin->SetOutputFiles(outputFiles.Data());
1675 TString outputArchive;
1676 outputArchive = Form("log_archive.zip:std*@%s","disk=1");
1677 listaods.ReplaceAll(" ", ",");
1678 listhists.ReplaceAll(" ", ",");
1679 if (listhists.Length()){
1680 outputArchive += " ";
1681 outputArchive += "root_archive.zip:";
1682 outputArchive += listhists;
1683 if (listaods.Length()){
1684 outputArchive += ",";
1685 outputArchive += listaods;
1687 outputArchive += Form("@%s", kGridOutputStorages.Data());
1691 if (listaods.Length()){
1692 // we have only aod'ish output
1693 outputArchive += " ";
1694 outputArchive += "root_archive.zip:";
1695 outputArchive += listaods;
1696 outputArchive += Form("@%s", kGridOutputStorages.Data());
1699 // no other outputs than std..
1700 ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
1704 plugin->SetDefaultOutputs(kFALSE);
1705 plugin->SetOutputArchive(outputArchive);
1708 // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
1709 plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
1710 // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
1711 plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
1712 // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
1713 // plugin->SetMaxInitFailed(5);
1714 // Optionally resubmit threshold.
1715 // plugin->SetMasterResubmitThreshold(90);
1716 // Optionally set time to live (default 30000 sec)
1717 plugin->SetTTL(50400); // 14h...
1718 // Optionally set input format (default xml-single)
1719 plugin->SetInputFormat("xml-single");
1720 // Optionally modify the name of the generated JDL (default analysis.jdl)
1721 plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
1722 // Optionally modify the executable name (default analysis.sh)
1723 plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
1724 // Optionally modify job price (default 1)
1725 plugin->SetPrice(1);
1726 // Optionally modify split mode (default 'se')
1727 plugin->SetSplitMode("se");
1731 //______________________________________________________________________________
1734 // Write train configuration in a file. The file name has the format:
1735 // train_[trainName]_ddMonthyyyy_time.C
1737 gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
1738 ifstream fdate("date.tmp");
1739 if (!fdate.is_open()) {
1740 ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
1743 const char date[64];
1744 fdate.getline(date,64);
1746 gSystem->Exec("rm date.tmp");
1747 kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
1749 kTrainName = Form("train_%s", kTrainName.Data());
1751 TString cdir = gSystem->WorkingDirectory();
1752 gSystem->MakeDirectory(kTrainName);
1753 gSystem->ChangeDirectory(kTrainName);
1755 out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
1757 ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
1761 out << " kTrainName = " << "\"" << kTrainName.Data() << "\";" << endl;
1762 out << " kProofCluster = " << "\"" << kProofCluster.Data() << "\";" << endl;
1763 out << " kProofUseAFPAR = " << kProofUseAFPAR << ";" << endl;
1765 out << " kProofAFversion = " << kProofAFversion.Data() << ";" << endl;
1766 out << " kProofDataSet = " << "\"" << kProofDataSet.Data() << "\";" << endl;
1767 out << " kPluginUse = " << kPluginUse << ";" << endl;
1768 out << " kUsePAR = " << kUsePAR << ";" << endl;
1769 out << " kUseCPAR = " << kUseCPAR << ";" << endl;
1770 out << " kPluginRootVersion = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
1771 out << " kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
1772 out << " kGridDatadir = " << "\"" << kGridDatadir.Data() << "\";" << endl;
1773 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1774 out << " kGridOutdir = " << "\"" << kGridOutdir.Data() << "\";" << endl;
1775 out << " kGridMaxMergeFiles = " << kGridMaxMergeFiles << ";" << endl;
1776 out << " kGridMergeExclude = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
1777 out << " kGridRunsPerMaster = " << kGridRunsPerMaster << ";" << endl;
1778 out << " kGridFilesPerJob = " << kGridFilesPerJob << ";" << endl;
1779 out << " kGridRunRange[0] = " << kGridRunRange[0] << ";" << endl;
1780 out << " kGridRunRange[1] = " << kGridRunRange[1] << ";" << endl;
1781 out << " kUseDebug = " << kUseDebug << ";" << endl;
1782 out << " kUseMC = " << kUseMC << ";" << endl;
1783 out << " kUseESDTags = " << kUseESDTags << ";" << endl;
1784 out << " kUseKinefilter = " << kUseKinefilter << ";" << endl;
1785 out << " kUseTR = " << kUseTR << ";" << endl;
1786 out << " kUseAODTags = " << kUseAODTags << ";" << endl;
1787 out << " kSaveTrain = " << "kFALSE;" << endl << endl;
1788 out << " // Analysis modules" << endl;
1789 out << " iAODanalysis = " << iAODanalysis << ";" << endl;
1790 out << " iAODhandler = " << iAODhandler << ";" << endl;
1791 out << " iESDfilter = " << iESDfilter << ";" << endl;
1792 out << " iJETAN = " << iJETAN << ";" << endl;
1793 out << "// Configuration fot the wagons" << endl;
1795 ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
1796 gSystem->ChangeDirectory(cdir);
1799 //______________________________________________________________________________
1800 Bool_t LoadConfig(const char *filename)
1802 // Read train configuration from file
1803 if (gSystem->AccessPathName(filename)) {
1804 ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1807 gROOT->ProcessLine(Form(".x %s", filename));
1808 ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1813 Printf(">>> Patching JDL");
1814 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1815 AliAnalysisAlien* gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1816 TGridJDL *jdl = gridHandler->GetGridJDL();
1817 if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
1818 gridHandler->WriteJDL(kFALSE);
1819 Printf("<<< Patching JDL");
1823 Bool_t PatchAnalysisMacro(){
1824 Printf(">>> Patching AnalysisMacro");
1825 gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
1828 in1.open(Form("%s.C_tmp", kTrainName.Data()));
1831 while(in1.getline(cLine,250)){
1836 index = st.Index("gSystem->Load(\"libPhysics\");");
1837 index += strlen("gSystem->Load(\"libPhysics\");");
1841 arr = anaLibs.Tokenize(" ");
1844 add += "\n\n // added by CKB \n";
1845 while ((objstr=(TObjString*)next())){
1846 if(objstr->GetString().Contains("PWG3"))continue;
1847 if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
1851 // add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
1854 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1855 add += "\n\n // added by CKB \n";
1856 if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
1857 add += "\n gSystem->AddIncludePath(\"./\"); \n";
1858 if(gGrid&&kPluginAliRootVersion.Length()==0){
1859 add += "\n // Dirty hack for TRD reference data \n";
1860 add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
1861 add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
1864 add += "// BKC \n\n";
1865 st.Insert(index,add.Data());
1868 // st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
1871 if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
1872 index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
1873 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1874 st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
1877 if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
1878 index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
1879 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1880 st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n // CKB comment out for own setting \n //");
1884 out.open(Form("%s.C", kTrainName.Data()));
1889 Printf("<<< Patching AnalysisMacro");
1895 Printf(">>> Patching Merge Macro");
1896 gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
1899 in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
1901 while(in2.getline(cLine,250)){
1905 index = st2.Index("gSystem->Load(\"libPhysics\");");
1906 index += strlen("gSystem->Load(\"libPhysics\");");
1908 add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
1909 if(gGrid&&kPluginAliRootVersion.Length()==0){
1910 add2 += "\n // Dirty hack for TRD reference data \n";
1911 add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
1912 add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
1915 add2 += "// BKC \n\n";
1916 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1917 st2.Insert(index,add.Data());
1921 // st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
1924 if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
1925 index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
1926 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1927 st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
1930 // do not exclude the extra files from merign, this is done explicitly in this train script
1931 index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
1932 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1933 st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
1937 out2.open(Form("%s_merge.C", kTrainName.Data()));
1941 out2 << st2 << endl;
1942 Printf("<<< Patching Merging Macro");