PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kFALSE;  // switch of AOD filling for on the fly analysis
  35 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  36 //== general input and output variables
  37
  38 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  39 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  40 Int_t       iCentralitySelection  = 0;      // Use the centrality
  41 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  42 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  43 UInt_t      iPhysicsSelectionFlag = 0; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  44 Bool_t      useTender           = kFALSE; // use tender wagon
  45 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  46 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  47 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  48 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  49
  50
  51 //== general process variables
  52
  53 // ### Other flags to steer the analysis
  54 //==============================================================================
  55 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  56 Bool_t      kUseDate            = kFALSE; // use date in train name
  57 Bool_t      kUseDebug           = kTRUE; // activate debugging
  58 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  59 // From TError.h:
  60 // const Int_t kUnset    =  -1;
  61 // const Int_t kPrint    =   0;
  62 // const Int_t kInfo     =   1000;
  63 // const Int_t kWarning  =   2000;
  64 // const Int_t kError    =   3000;
  65 // const Int_t kBreak    =   4000;
  66 // const Int_t kSysError =   5000;
  67 // const Int_t kFatal    =   6000;
  68 Int_t         kUseSysInfo         = 0; // activate debugging
  69 Long64_t kNumberOfEvents     = 1234567890; // number of events to process from the chain
  70 Bool_t      kUseMC              = kTRUE;  // use MC info
  71 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  72 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  73 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  74 Bool_t      kUseTR              = kFALSE;  // use track references
  75 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  76 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  77 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  78
  79
  80 // ### Analysis modules to be included. Some may not be yet fully implemented.
  81 //==============================================================================
  82 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  83 Int_t       iDIJETAN           = 1;
  84 Int_t       iJETANLib          = 1;
  85 Int_t       iPWG1QASym         = 0;      // Eva's QA task compiled on the fly...
  86 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
  87 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
  88 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
  89 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
  90 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
  91 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
  92 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
  93 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
  94 Int_t       iPWG4Fragmentation = 0;      // Official Fragmentation
  95 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
  96 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
  97 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
  98 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
  99 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
 100 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
 101 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
 102 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 103 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 104 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 105 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 106 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 107 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 108 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 109 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 110 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 111 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 112 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 113 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 114 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 115 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 116 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 117 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 118 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
 119
 120
 121 //==============================================================================
 122 // ### PROOF Steering varibales
 123 //==============================================================================
 124 //== proof setup variables
 125 TString     kProofCluster      = "alicecaf.cern.ch";
 126 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 127 TString     kProofAFversion          = "AF-v4-17";
 128 //== proof input and output variables
 129 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 130 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 131 TString     kProofOutdir       = "";
 132 Bool_t      kProofClearPackages = kFALSE;
 133 Int_t       kProofEvents = 10000;
 134 Int_t       kProofOffset = 0;
 135 //== proof process variables
 136
 137
 138 //==============================================================================
 139 // ### Grid plugin Steering varibiables
 140 //==============================================================================
 141 //== grid plugin setup variables
 142 Bool_t      kPluginUse         = kTRUE;   // do not change
 143 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 144 TString     kPluginRootVersion       = "v5-27-06b";  // *CHANGE ME IF MORE RECENT IN GRID*
 145 TString     kPluginAliRootVersion    = "v4-19-15-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 146 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 147 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 148 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 149 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 150 // TString kPluginExecutableCommand = "root -b -q";
 151 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 152
 153 // == grid plugin input and output variables
 154 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 155 Int_t         kGridMaxRunsFromList = 999999999;
 156 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 157 TString     kGridLocalRunList = "";
 158 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 159 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 160 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 161 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 162 TString     kGridPassPattern       = "";
 163 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 164 Int_t         kGridMaxMergeFiles      = 12; // Number of files merged in a chunk grid run range
 165 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 166 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 167 // == grid process variables
 168 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 169 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 170
 171 //==============================================================================
 172 // ### Local Steering variables
 173 //==============================================================================
 174 //== local setup variables
 175 //== local input and output variables
 176 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 177 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 178 // == local process variables
 179
 180 TString kPluginMode;
 181
 182
 183 // Temporaries.
 184 TString anaPars = "";
 185 TString anaLibs = "";
 186 TString anaLibsExtra = "";
 187 TString anaSources = "";
 188 // Function signatures
 189 class AliAnalysisAlien;
 190
 191 //______________________________________________________________________________
 192 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 193                            const char *plugin_mode="",
 194                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 195 {
 196 // Main analysis train macro. If a configuration file is provided, all parameters
 197 // are taken from there but may be altered by CheckModuleFlags.
 198
 199   // these flag may be needed by the config file
 200   kPluginMode = plugin_mode;
 201
 202   if (strlen(config_file) && !LoadConfig(config_file)) return;
 203   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 204   if(iOffset)kGridOffsetRunFromList = iOffset;
 205   if(iOffset)kProofOffset = iOffset;
 206
 207
 208    TString smode(analysis_mode);
 209    smode.ToUpper();
 210    if (kSaveTrain)WriteConfig();
 211    // Check compatibility of selected modules
 212    CheckModuleFlags(smode);
 213    //     gROOT->ProcessLine(".trace");
 214
 215    printf("==================================================================\n");
 216    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 217    printf("==================================================================\n");
 218                               printf("=  Configuring analysis train for:                               =\n");
 219    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 220    else                     printf("=  ESD analysis                                                  =\n");
 221    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 222    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 223    if (useTender)   printf("=  Using tender                                                =\n");
 224    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 225    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 226    printf("==================================================================\n");
 227
 228    char *printMask = ":: %20s  %10d\n";
 229    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 230    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 231    printf(printMask,"MC truth", (UInt_t)kUseMC);
 232    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 233    printf(printMask,"track refs", (UInt_t)kUseTR);
 234    printf(printMask,"tags", (UInt_t)kUseESDTags);
 235    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 236    printf(printMask,"debugging", (UInt_t)kUseDebug);
 237    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 238    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 239    printf(printMask,"PWG1 QA sym", iPWG1QASym);
 240    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 241    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 242    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 243    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 244    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 245    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 246    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 247    printf(printMask,"PWG4 UE",iPWG4UE);
 248    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 249    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 250    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 251    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 252    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 253    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 254    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 255    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 256    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 257    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 258    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 259    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 260    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 261    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 262    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 263    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 264    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 265    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 266    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 267    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 268
 269    //==========================================================================
 270    // Connect to back-end system
 271    if (!Connect(smode)) {
 272       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 273       return;
 274    }
 275
 276    // Load common libraries and set include path
 277    if (!LoadCommonLibraries(smode)) {
 278       ::Error("AnalysisTrain", "Could not load common libraries");
 279       return;
 280    }
 281
 282
 283
 284    // Make the analysis manager and connect event handlers
 285    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 286    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 287    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 288    mgr->SetNSysInfo(0);
 289    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 290    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 291    mgr->SetSkipTerminate(kSkipTerminate);
 292
 293    // Load analysis specific libraries
 294    if (!LoadAnalysisLibraries(smode)) {
 295       ::Error("AnalysisTrain", "Could not load analysis libraries");
 296      return;
 297    }
 298
 299    // Create input handler (input container created automatically)
 300    if (iAODanalysis) {
 301    // AOD input handler
 302       AliAODInputHandler *aodH = new AliAODInputHandler();
 303       mgr->SetInputEventHandler(aodH);
 304       //      if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
 305       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 306    } else {
 307    // ESD input handler
 308       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 309       if (kUseESDTags) esdHandler->SetReadTags();
 310       esdHandler->SetReadFriends(kFALSE);
 311       mgr->SetInputEventHandler(esdHandler);
 312       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 313
 314    }
 315
 316    // Monte Carlo handler
 317    if (kUseMC && !iAODanalysis) {
 318       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 319       mgr->SetMCtruthEventHandler(mcHandler);
 320       mcHandler->SetReadTR(kUseTR);
 321    }
 322    // AOD output container, created automatically when setting an AOD handler
 323    if (iAODhandler) {
 324       // AOD output handler
 325       AliAODHandler* aodHandler   = new AliAODHandler();
 326       aodHandler->SetOutputFileName("AliAOD.root");
 327       aodHandler->SetFillAODforRun(kFillAOD);
 328       //
 329       mgr->SetOutputEventHandler(aodHandler);
 330       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 331       cout_aod->SetSpecialOutput();
 332    }
 333    // Debugging if needed
 334
 335    if (kUseDebug){
 336      mgr->SetDebugLevel(3);
 337    }
 338    if(kUseSysInfo>0){
 339      mgr->RegisterExtraFile("syswatch.root");
 340      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 341      kGridMergeExclude += "syswatch.root";
 342    }
 343    else{
 344      AliLog::SetGlobalLogLevel(AliLog::kError);
 345    }
 346
 347
 348    //==========================================================================
 349    // Create the chain. In this example it is created only from ALIEN files but
 350    // can be done to work in batch or grid mode as well.
 351    TChain *chain = CreateChain(smode, plugin_mode);
 352
 353    //==========================================================================
 354    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 355    // in the current workdir, but in AliEn they will be in the file catalog,
 356    // mapped from AliRoot and pecified in the jdl input list.
 357
 358    // For now connection to top input container and common AOD output container
 359    // is done in this macro, but in future these containers will be connected
 360    // from each task configuration macro.
 361
 362    //
 363    // Tender and supplies. Needs to be called for every event.
 364    //
 365    if (useTender) {
 366       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 367       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 368       //      tender->SelectCollisionCandidates();
 369       tender->SetDebugLevel(2);
 370    }
 371
 372
 373
 374    if(iPhysicsSelection && !iAODanalysis){
 375      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 376      Int_t iTriggerHIC = 0;
 377      Bool_t rejectBkg = true;
 378      if(kIsPbPb){
 379        iTriggerHIC = 2;
 380        rejectBkg = false; // for the moment...
 381      }
 382      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
 383      iPhysicsSelectionFlag = AliVEvent::kMB;
 384    }
 385
 386    if(iCentralitySelection){
 387
 388      // has to run before AOD filter
 389      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCentralitySelection.C");
 390      const char* file1="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161_v4.root";
 391      const char* file2="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161_v4.root";
 392      AliCentralitySelectionTask *taskC = AddTaskCentralitySelection(file1,file2);
 393       if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 394    }
 395
 396    if (iESDfilter && !iAODanalysis) {
 397       //  ESD filter task configuration.
 398       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 399       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
 400       taskesdfilter->SetEnableFillAOD(kFALSE);
 401
 402       if(kIsMC){
 403         mgr->RegisterExtraFile("pyxsec_hists.root");
 404         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 405         kGridMergeExclude += "pyxsec_hists.root";
 406
 407       }
 408    }
 409
 410    // AOD tags
 411    if (kUseAODTags) {
 412       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 413       mgr->AddTask(tagTask);
 414       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 415                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 416       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 417       mgr->ConnectOutput(tagTask, 1, coutTags);
 418    }
 419
 420     // Jet analysis
 421    if (iJETAN) {
 422       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 423       AliAnalysisTaskJets *taskjets = 0;
 424       if(iJETAN&1)taskjets = AddTaskJets(kHighPtFilterMask);
 425       if(iJETAN&2){
 426         UInt_t selection = 0;
 427         if(!kFillAOD){
 428           selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time
 429           selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
 430         }
 431         else {
 432           selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time;
 433           selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
 434         }
 435         AddTaskJetsDelta(kDeltaAODJetName.Data(),kHighPtFilterMask,kUseAODMC,selection);
 436         AddTaskJets("AOD","FASTKT",0.2,kHighPtFilterMask);
 437       }
 438       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 439        if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 440    }
 441
 442    if(iPWG4Cluster){
 443      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 444      AliAnalysisTaskJetCluster *taskCl = 0;
 445      Float_t fCenUp = 0;
 446      Float_t fCenLo = 0;
 447      if(kIsPbPb&&!kIsMC){
 448        fCenLo = 0;
 449        fCenUp = 80;
 450      }
 451      if(iPWG4Cluster&1){
 452
 453        if(kIsPbPb){
 454          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data()); // this one is for the background random jets
 455          taskCl->SetBackgroundCalc(kTRUE);
 456          taskCl->SetGhostEtamax(0.9);
 457          taskCl->SetCentralityCut(fCenLo,fCenUp);
 458          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data()); // this one is for the background random jets
 459          taskCl->SetBackgroundCalc(kTRUE);
 460          taskCl->SetCentralityCut(fCenLo,fCenUp);
 461          taskCl->SetGhostEtamax(0.9);
 462        }
 463        else{
 464          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
 465          taskCl->SetBackgroundCalc(kTRUE);
 466        }
 467
 468        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
 469        taskCl->SetCentralityCut(fCenLo,fCenUp);
 470        taskCl->SetBackgroundBranch("jeteventbackground_clustersAOD_KT04");
 471
 472        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
 473        taskCl->SetCentralityCut(fCenLo,fCenUp);
 474        taskCl->SetJetTriggerPtCut(40.);//
 475        taskCl->SetBackgroundBranch("jeteventbackground_clustersAOD_KT04");
 476
 477
 478
 479        if(kUseAODMC){
 480          if(kIsPbPb){
 481            // calcluate the backgrounds first, but only R = 0.4
 482            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data()); // this one is for the background random jets
 483            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data()); // this one is for the background random jets
 484
 485
 486
 487            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
 488            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC_KT04");
 489            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
 490            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC_KT04");
 491            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
 492            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC2_KT04");
 493            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
 494            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC2_KT04");
 495          }
 496          else{
 497            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
 498            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
 499
 500
 501            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
 502            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC_KT06");
 503            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
 504            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC_KT06");
 505            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
 506            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC2_KT06");
 507            taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
 508            taskCl->SetBackgroundBranch("jeteventbackground_clustersAODMC2_KT06");
 509
 510
 511
 512          }
 513        }
 514
 515        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 516      }
 517      if(iPWG4Cluster&2){
 518        UInt_t selection = 0;
 519        if(!iAODanalysis) selection = 0xffffff;
 520        else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
 521        if(kIsPbPb){
 522          selection&=~(1<<2); // exluded R = .04 already the dafault
 523          selection&=~(1<<4); // exluded R = .04 already the dafault
 524        }
 525        else{
 526          selection&=~(1<<6); // exluded R = .04 already the dafault
 527        }
 528        AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,"KT",selection);
 529      }
 530      if(iPWG4Cluster&4){
 531        UInt_t selection = 0;
 532        if(!iAODanalysis){
 533          selection = 0xffffff;
 534          selection &= ~(1<<1)&~(1<<3)&~(1<<5)&~(1<<7)&~(1<<9);
 535        }
 536        else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
 537        selection&=~(1<<2); // exluded R = .04 already the dafault
 538        selection&=~(1<<4); // exluded R = .04 already the dafault
 539        AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,"ANTIKT",selection);
 540        //       AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"ANTIKT",0.4,0,1);
 541
 542      }
 543    }
 544
 545    if (iDIJETAN) {
 546       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 547       AliAnalysisTaskDiJets *taskdijets = 0;
 548       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 549       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 550       if(iDIJETAN&2){
 551         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 552         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 553         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 554         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 555         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 556         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 557       }
 558    }
 559
 560    if(iPWG1QASym){
 561      gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
 562      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 563      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 564    }
 565
 566
 567
 568    if(iPWG4TmpSourceSara){
 569      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 570      AliAnalysisTaskEta *taskEta = AddTaskEta();
 571      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 572    }
 573
 574    if(iPWG4Fragmentation){
 575      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
 576        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
 577      if(kUseAODMC){
 578        taskFrag = AddTaskFragmentationFunction(1<<1,kHighPtFilterMask);
 579        taskFrag = AddTaskFragmentationFunction(1<<2,kHighPtFilterMask);
 580        //       taskFrag = AddTaskFragmentationFunction(1<<3,kHighPtFilterMask);
 581        taskFrag = AddTaskFragmentationFunction(1<<5,kHighPtFilterMask);
 582        taskFrag = AddTaskFragmentationFunction(1<<11);  // w/o acceptance cuts
 583        taskFrag =  AddTaskFragmentationFunction(1<<12);  // with acceptance cuts
 584        // anti-kt
 585        taskFrag = AddTaskFragmentationFunction(1<<21);  // w/o acceptance cuts
 586        taskFrag = AddTaskFragmentationFunction(1<<22);  // with acceptance cuts
 587
 588      }
 589      else{
 590        taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask);
 591        taskFrag = AddTaskFragmentationFunction(1<<10,kHighPtFilterMask);
 592        taskFrag = AddTaskFragmentationFunction(1<<20,kHighPtFilterMask);
 593      }
 594
 595      if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
 596    }
 597
 598
 599    if(iPWG4JetChem){
 600      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
 601      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
 602      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
 603    }
 604
 605
 606    if(iPWG4JetServices){
 607      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 608      AliAnalysisTaskJetServices *taskjetServ = 0;
 609      taskjetServ = AddTaskJetServices();
 610      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 611      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 612      else taskjetServ->SetRunRange(110000,160000);
 613      taskjetServ->SetMCData(kIsMC);
 614      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 615      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 616      taskjetServ->SetDebugLevel(0);
 617      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 618      if(kIsPbPb){
 619        taskjetServ->SetFilterAODCollisions(kTRUE);
 620      }
 621      if(iAODanalysis){
 622        taskjetServ->SetAODInput(kTRUE);
 623      }
 624    }
 625
 626    if(iPWG4JetSpectrum){
 627      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 628      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 629
 630      TString cBack;
 631      if(kIsPbPb){
 632        cBack = "jeteventbackground_clustersAOD_KT04";
 633      }
 634      else{
 635        cBack = "jeteventbackground_clustersAOD_KT06";
 636      }
 637
 638      if(iPWG4JetSpectrum&1){
 639        // add the dfault jet finders with R = 0.4
 640        UInt_t iSelection = 0xfffff;
 641
 642        //  taskJetSpectrum = AddTaskJetSpectrum2Delta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,iSelection,0,kTRUE,cBack.Data());  // bug fixed 10.11.10
 643        taskJetSpectrum = AddTaskJetSpectrum2("clustersAOD_ANTIKT04","",cBack.Data(),kHighPtFilterMask,iPhysicsSelectionFlag,0,kTRUE,1);
 644        if(iAODanalysis){
 645          taskJetSpectrum->SetDebugLevel(1);
 646          taskJetSpectrum->SetAODJetInput(kTRUE);
 647          taskJetSpectrum->SetAODTrackInput(kTRUE);
 648          taskJetSpectrum->SetUseGlobalSelection(kFALSE);
 649        }
 650      }
 651      if(iPWG4JetSpectrum&2){
 652        if(kIsMC){
 653          UInt_t eventSelection =  AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
 654          if(iPhysicsSelection)eventSelection |=  AliAnalysisHelperJetTasks::kPhysicsSelection;
 655          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 656          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 657
 658          eventSelection =  AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
 659          if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 660          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 661
 662          eventSelection =  AliAnalysisHelperJetTasks::kNone;
 663          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 664          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 665          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 666        }
 667        else{
 668          UInt_t eventSelection =  AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
 669          if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 670          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 671          eventSelection =  AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
 672          if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 673          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
 674        }
 675      }
 676      if(iPWG4JetSpectrum&4){
 677        // central events backgrounds... just for testing...
 678        if(kIsPbPb){
 679          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","",cBack.Data(),kHighPtFilterMask,iPhysicsSelectionFlag,0,kTRUE,1,1);
 680          taskjetSpectrum->SetDebugLevel(10);
 681        }
 682      }
 683      if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
 684
 685    }
 686
 687
 688    if(iPWG4JCORRAN){
 689      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
 690      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
 691      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
 692      else{
 693        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
 694      }
 695    }
 696
 697    if(iPWG4UE){
 698      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
 699      AliAnalysisTaskUE *taskUE = 0;
 700      if(iPWG4UE&1)taskUE = AddTaskUE();
 701      if(iPWG4UE&2){
 702        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 703        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
 704        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
 705        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 706        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
 707        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
 708        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 709        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
 710        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
 711      }
 712
 713      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
 714    }
 715
 716    if(iPWG4LeadingUE){
 717      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
 718      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
 719      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
 720      //     taskLeadingUE->SetFilterBit(64);
 721    }
 722
 723
 724    if(iPWG4CorrectionsUE){
 725      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
 726      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
 727      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
 728      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
 729    }
 730
 731    if(iPWG4ThreeJets){
 732      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
 733      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
 734      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
 735    }
 736    if(iPWG4QGSep){
 737      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
 738      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
 739      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
 740    }
 741
 742
 743    if(iPWG4Minijet){
 744      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
 745      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
 746      // if we ha highmult trigger add another task
 747      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
 748    }
 749
 750
 751    if(iPWG4PtQAMC){
 752      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
 753      AliPWG4HighPtQAMC *taskQAMC = 0;
 754      if(kUseMC){
 755        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
 756        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
 757      }
 758      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
 759    }
 760
 761    if(iPWG4PtQATPC){
 762      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
 763      AliPWG4HighPtQATPConly *taskQATPC = 0;
 764      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
 765      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
 766
 767  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
 768    }
 769
 770    if(iPWG4Cosmics){
 771      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
 772
 773      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
 774      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
 775
 776      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
 777    }
 778
 779
 780    if(iPWG4PtSpectra){
 781      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
 782      AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra(kGridDataSet.Data());
 783      if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
 784    }
 785    if(iPWG4KMeans){
 786      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
 787      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
 788      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
 789    }
 790
 791    if(iPWG4PartCorr){
 792      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
 793      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
 794      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
 795      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
 796      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
 797      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
 798    }
 799
 800    if(iPWG4CaloQA){
 801      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
 802      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
 803      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
 804      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
 805    }
 806
 807    if(iPWG4JetCorr){
 808      //     using namespace JetCorrelHD;
 809      TString cdir = gSystem->WorkingDirectory();
 810      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 811      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
 812      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
 813      gSystem->ChangeDirectory(cdir);
 814      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
 815    }
 816
 817    if(iPWG4Tagged){
 818      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
 819      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
 820      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
 821      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
 822    }
 823    if (iPWG4omega3pi) {
 824      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
 825      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
 826      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
 827  for these train conditions - EXCLUDED");
 828    }
 829
 830    // PWG4 gamma conversion analysis
 831    if (iPWG4GammaConv) {
 832       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
 833       TString cdir = gSystem->WorkingDirectory();
 834       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 835       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
 836       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 837       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 838       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
 839       //      TString kGCAnalysisCutSelectionId="9003562000100310";
 840       //      TString kGCAnalysisCutSelectionId="9003562000100312";
 841       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
 842       if(!kIsMC)gcArguments += " -mc-off";
 843       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
 844       gSystem->ChangeDirectory(cdir);
 845       taskGammaConversion->SelectCollisionCandidates();
 846       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
 847    }
 848
 849    if (iPWG4CaloConv) {
 850       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
 851       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
 852       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
 853    }
 854
 855
 856
 857    //==========================================================================
 858    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
 859    // Run the analysis
 860    //
 861    if (kPluginUse) {
 862       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
 863       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
 864    }
 865
 866    if (mgr->InitAnalysis()) {
 867      mgr->PrintStatus();
 868      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
 869      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
 870        TString alien_workdir = gGrid->GetHomeDirectory();
 871        if (iAODanalysis) alien_workdir += "analysisAOD";
 872        else              alien_workdir += "analysisESD";
 873        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 874        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 875        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
 876               alien_workdir.Data(),gridhandler->GetGridOutputDir());
 877
 878        TString dest;
 879        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 880        if(AliAnalysisAlien::FileExists(dest.Data())){
 881          //      Printf("%s exist on grid removing...",dest.Data());
 882          //      gGrid->Rm(dest.Data());
 883        }
 884        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 885
 886
 887        TString dest;
 888        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 889        if(AliAnalysisAlien::FileExists(dest.Data())){
 890          //      Printf("%s exist on grid removing...",dest.Data());
 891          //      gGrid->Rm(dest.Data());
 892        }
 893        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 894
 895
 896        dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
 897        if(AliAnalysisAlien::FileExists(dest.Data())){
 898          Printf("%s exist on grid removing...",dest.Data());
 899          gGrid->Rm(dest.Data());
 900        }
 901        TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
 902                       gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
 903      }
 904      AliLog::SetGlobalLogLevel(AliLog::kError);
 905      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 906        TFile * fM = TFile::Open("manager_local.root","RECREATE");
 907        mgr->Write();
 908        fM->Close();
 909      }
 910
 911      // grmpf, aliroot error handler overwrites root
 912      gErrorIgnoreLevel = kErrorIgnoreLevel;
 913      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
 914      StartAnalysis(smode, chain);
 915      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 916        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
 917          mgr->ProfileTask(i);
 918        }
 919      }
 920      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
 921        // Offline mode path files
 922        //       PatchJDL();
 923        PatchAnalysisMacro();
 924      }
 925
 926      if (kSaveTrain && smode=="GRID") {
 927        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 928        TString alien_workdir = gGrid->GetHomeDirectory();
 929        if (iAODanalysis) alien_workdir += "analysisAOD";
 930        else              alien_workdir += "analysisESD";
 931        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 932        //     kGridOutdir = gridhandler->GetGridOutputDir();
 933        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
 934                 alien_workdir.Data());
 935        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
 936          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 937        if (strcmp(plugin_mode, "test"))
 938          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 939      }
 940    }
 941 }
 942
 943 //______________________________________________________________________________
 944 void StartAnalysis(const char *mode, TChain *chain) {
 945 // Start analysis.
 946    Int_t imode = -1;
 947    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
 948    if (!strcmp(mode, "LOCAL")) imode = 0;
 949    if (!strcmp(mode, "PROOF")) imode = 1;
 950    if (!strcmp(mode, "GRID"))  imode = 2;
 951    switch (imode) {
 952       case 0:
 953          if (!chain) {
 954             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 955             return;
 956          }
 957          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 958          return;
 959       case 1:
 960          if (!kProofDataSet.Length()) {
 961             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
 962             return;
 963          }
 964          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
 965          return;
 966       case 2:
 967          if (kPluginUse) {
 968             if (!mgr->GetGridHandler()) {
 969                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
 970                return;
 971             }
 972             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
 973          } else {
 974             if (!chain) {
 975                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 976                return;
 977             }
 978             mgr->StartAnalysis(mode, chain);
 979             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 980          }
 981          return;
 982    }
 983 }
 984
 985 //______________________________________________________________________________
 986 void CheckModuleFlags(const char *mode) {
 987 // Checks selected modules and insure compatibility
 988    Int_t imode = -1;
 989    if (!strcmp(mode, "LOCAL")) imode = 0;
 990    if (!strcmp(mode, "PROOF")) imode = 1;
 991    if (!strcmp(mode, "GRID"))  imode = 2;
 992
 993
 994    if (kUseCPAR) {
 995      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
 996    }
 997
 998    if (imode==1) {
 999       if (!kUsePAR) {
1000          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
1001          kUsePAR = kTRUE;
1002       }
1003    }
1004    if (imode != 2) {
1005       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
1006       kPluginUse = kFALSE;
1007    }
1008
1009
1010    if(!kIsMC){
1011      // switch off anthin related to MC
1012      kUseMC = 0;
1013      kUseAODMC = 0;
1014      kUseTR = kFALSE;
1015    }
1016
1017    // Decide if we have PbPb
1018    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
1019      Printf("Using settings for Pb+Pb");
1020      kIsPbPb = true;
1021    }
1022
1023
1024
1025    if (iAODanalysis) {
1026    // AOD analysis
1027       if (kUseMC)
1028          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
1029       if (kUseAODTags)
1030          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
1031       kUseMC = kFALSE;
1032       kUseTR = kFALSE;
1033       kUseAODTags = kFALSE;
1034       if (iESDfilter)
1035          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
1036       iESDfilter   = 0;
1037       if (iPhysicsSelection)
1038          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
1039       iPhysicsSelection   = 0;
1040       if (!iAODhandler) {
1041          if (iJETAN)
1042             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
1043          iJETAN = 0;
1044          iDIJETAN = 0;
1045       }
1046       // Disable tasks that do not work yet on AOD data
1047       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
1048       iPWG4JCORRAN = 0;
1049       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1050       iPWG4PtQAMC        = 0;
1051       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
1052       iPWG4PtQATPC        = 0;
1053       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
1054       iPWG4Cosmics        = 0;
1055
1056       if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1057       iPWG4PtSpectra     = 0;
1058       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1059       iPWG4KMeans       = 0;
1060       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1061       iPWG4JetCorr = 0;
1062       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1063       iPWG4PartCorr = 0;
1064       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1065       iPWG4CaloQA = 0;
1066       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1067       iPWG4Tagged = 0;
1068       if (iPWG4omega3pi)
1069         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1070       iPWG4omega3pi = 0;
1071       if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
1072       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1073       iPWG4GammaConv = 0;
1074       iPWG1QASym     = 0;
1075       iCentralitySelection = 0;
1076    } else {
1077    // ESD analysis
1078
1079      if(kIsPbPb){
1080        iCentralitySelection = 1;
1081      }
1082
1083      if (!kUseMC){
1084        kUseTR = kFALSE;
1085
1086        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1087        kUseKinefilter = kFALSE;
1088        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1089        iPWG4PtQAMC        = 0;
1090        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1091        iPWG4CorrectionsUE = 0;
1092      }
1093      if (!kUseTR) {
1094        if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
1095        iPWG4PtQAMC        = 0;
1096      }
1097      if (iJETAN){
1098        iESDfilter=1;
1099      }
1100       if (!iESDfilter){
1101         kUseKinefilter = kFALSE;
1102         kUseMuonfilter = kFALSE;
1103       }
1104       if(!iJETAN){
1105         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
1106       }
1107    }
1108    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
1109    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
1110    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1111
1112
1113    iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib;
1114    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1115
1116    if (iESDfilter) {iAODhandler=1;}
1117    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1118    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1119
1120
1121
1122 }
1123
1124 //______________________________________________________________________________
1125 Bool_t Connect(const char *mode) {
1126 // Connect <username> to the back-end system.
1127    Int_t imode = -1;
1128    if (!strcmp(mode, "LOCAL")) imode = 0;
1129    if (!strcmp(mode, "PROOF")) imode = 1;
1130    if (!strcmp(mode, "GRID"))  imode = 2;
1131    TString username = gSystem->Getenv("alien_API_USER");
1132    switch (imode) {
1133       case 0:
1134          break;
1135       case 1:
1136          if  (!username.Length()) {
1137             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1138                            1. Have called: alien-token-init <username>\n \
1139                            2. Have called: >source /tmp/gclient_env_$UID");
1140             return kFALSE;
1141          }
1142          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1143                 username.Data(), kProofCluster.Data());
1144          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1145 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1146          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1147          if (!gProof) {
1148             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1149                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1150             return kFALSE;
1151          }
1152          if(kProofClearPackages)gProof->ClearPackages();
1153
1154          if(kProofSaveToAlien){
1155            TGrid::Connect("alien://");
1156            if (gGrid) {
1157              TString homedir = gGrid->GetHomeDirectory();
1158              TString workdir = homedir + kTrainName;
1159              if (!gGrid->Cd(workdir)) {
1160                gGrid->Cd(homedir);
1161                if (gGrid->Mkdir(workdir)) {
1162                  gGrid->Cd(kTrainName);
1163                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1164                }
1165              }
1166              gGrid->Mkdir("proof_output");
1167              gGrid->Cd("proof_output");
1168              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1169            }
1170          }
1171          break;
1172       case 2:
1173          if  (!username.Length()) {
1174             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1175                            1. Have called: alien-token-init <username>\n \
1176                            2. Have called: >source /tmp/gclient_env_$UID");
1177             return kFALSE;
1178          }
1179          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1180             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1181                            "When using the AliEn plugin it is preferable to define the \
1182                            variable alien_CLOSE_SE in your environment.");
1183             return kFALSE;
1184          }
1185          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1186                 username.Data());
1187          TGrid::Connect("alien://");
1188          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1189          break;
1190       default:
1191          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1192          return kFALSE;
1193    }
1194    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1195    return kTRUE;
1196 }
1197
1198 //______________________________________________________________________________
1199 Bool_t LoadCommonLibraries(const char *mode)
1200 {
1201 // Load common analysis libraries.
1202    Int_t imode = -1;
1203    if (!strcmp(mode, "LOCAL")) imode = 0;
1204    if (!strcmp(mode, "PROOF")) imode = 1;
1205    if (!strcmp(mode, "GRID"))  imode = 2;
1206    if (!gSystem->Getenv("ALICE_ROOT")) {
1207       ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1208       return kFALSE;
1209    }
1210    Bool_t success = kTRUE;
1211    // ROOT libraries
1212    gSystem->Load("libTree.so");
1213    gSystem->Load("libGeom.so");
1214    gSystem->Load("libVMC.so");
1215    gSystem->Load("libPhysics.so");
1216
1217    // Load framework classes. Par option ignored here.
1218    switch (imode) {
1219       case 0:
1220       case 2:
1221          if (kUseCPAR) {
1222             success &= LoadLibrary("STEERBase", mode, kTRUE);
1223             success &= LoadLibrary("ESD", mode, kTRUE);
1224             success &= LoadLibrary("AOD", mode, kTRUE);
1225             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1226             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1227             success &= LoadLibrary("CORRFW", mode, kTRUE);
1228          } else {
1229             success &= LoadLibrary("libSTEERBase.so", mode);
1230             success &= LoadLibrary("libESD.so", mode);
1231             success &= LoadLibrary("libAOD.so", mode);
1232             success &= LoadLibrary("libANALYSIS.so", mode);
1233             success &= LoadLibrary("libANALYSISalice.so", mode);
1234             success &= LoadLibrary("libCORRFW.so", mode);
1235             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1236          }
1237          break;
1238       case 1:
1239          Int_t ires = -1;
1240          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1241          if (ires < 0) {
1242             success &= LoadLibrary("STEERBase", mode);
1243             success &= LoadLibrary("ESD", mode);
1244             success &= LoadLibrary("AOD", mode);
1245             success &= LoadLibrary("ANALYSIS", mode);
1246             success &= LoadLibrary("ANALYSISalice", mode);
1247             success &= LoadLibrary("CORRFW", mode);
1248          } else {
1249             ires = gProof->EnablePackage(kProofAFversion);
1250             if (ires<0) success = kFALSE;
1251             success &= LoadLibrary("CORRFW", mode);
1252          }
1253          break;
1254       default:
1255          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1256          return kFALSE;
1257    }
1258    if (success) {
1259       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1260       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1261               gSystem->GetIncludePath());
1262    } else {
1263       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1264    }
1265
1266    return success;
1267 }
1268
1269 //______________________________________________________________________________
1270 Bool_t LoadAnalysisLibraries(const char *mode)
1271 {
1272 // Load common analysis libraries.
1273   Bool_t success = kTRUE;
1274   if (useTender) {
1275       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1276           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1277    }
1278    if (iESDfilter) {
1279      /*
1280       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1281           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1282      */
1283    }
1284    // JETAN
1285    if (iJETANLib) {
1286      // this part needs some rework in case we do not need the fastjed finders for processing
1287      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1288      if (!strcmp(mode, "PROOF")){
1289        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1290        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1291        // problem when loading siscone copiled with different gcc version??
1292        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1293        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1294      }
1295      if(!kUsePAR){
1296        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1297        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1298        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1299        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1300      }
1301      else{
1302        // par files plus FASTJET needs some extra work... need to change
1303        // the loading sequence in the auto generated .C file
1304        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1305        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1306        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1307        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1308      }
1309      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1310    }
1311    if(iPWG4JetTasks){
1312      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1313    }
1314
1315    if(iPWG1QASym){
1316      if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1317    }
1318    if(iPWG4TmpSourceSara){
1319      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1320      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1321    }
1322
1323    /*
1324    if(iPWG4JetChem){
1325      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1326      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskJetChem.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1327    }
1328    */
1329
1330    if(iEMCUtilLibs){
1331      if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1332          !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1333    }
1334
1335    if (iPWG4PartCorrLibs) {
1336       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1337           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1338    }
1339    if(iPWG4JCORRAN){
1340      // PWG4 particle correlations
1341      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1342    }
1343    if (iPWG4JetCorr) {
1344      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1345    }
1346    if (iPWG4omega3pi) {
1347      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1348    }
1349    if (iPWG4GammaConvLib) {
1350       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1351    }
1352
1353    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1354    return kTRUE;
1355 }
1356
1357 //______________________________________________________________________________
1358 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1359 {
1360 // Load a module library in a given mode. Reports success.
1361    Int_t imode = -1;
1362    Int_t result;
1363    TString smodule(module);
1364    if (!strcmp(mode, "LOCAL")) imode = 0;
1365    if (!strcmp(mode, "PROOF")) imode = 1;
1366    if (!strcmp(mode, "GRID"))  imode = 2;
1367    TString mod(module);
1368    if (!mod.Length()) {
1369       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1370       return kFALSE;
1371    }
1372    // If a library is specified, just load it
1373    if (smodule.EndsWith(".so")) {
1374       mod.Remove(mod.Index(".so"));
1375       result = gSystem->Load(mod);
1376       if (result < 0) {
1377          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1378          return kFALSE;
1379       }
1380       if (rec) anaLibs += Form("%s.so ",mod.Data());
1381       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1382       return kTRUE;
1383    }
1384    // Check if the library is already loaded
1385    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1386       return kTRUE;
1387    switch (imode) {
1388       case 0:
1389       case 2:
1390          if (kUsePAR) {
1391             result = SetupPar(module);
1392             if (rec) anaPars += Form("%s.par ", module);
1393          } else {
1394             result = gSystem->Load(Form("lib%s.so", module));
1395             if (rec) anaLibs += Form("lib%s.so ", module);
1396          }
1397          break;
1398       case 1:
1399         if(!gSystem->AccessPathName(module)){
1400           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1401           gSystem->Exec(Form("rm -rf %s",module));
1402         }
1403          result = gProof->UploadPackage(module);
1404          if (result<0) {
1405             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1406             if (result<0) {
1407                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1408                return kFALSE;
1409             }
1410          }
1411          result = gProof->EnablePackage(module);
1412          break;
1413       default:
1414          return kFALSE;
1415    }
1416    if (result < 0) {
1417       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1418       return kFALSE;
1419    }
1420    return kTRUE;
1421 }
1422
1423
1424
1425 //______________________________________________________________________________
1426 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1427 {
1428 // Load a module library in a given mode. Reports success.
1429    Int_t imode = -1;
1430    Int_t result = -1;
1431    if (!strcmp(mode, "LOCAL")) imode = 0;
1432    if (!strcmp(mode, "PROOF")) imode = 1;
1433    if (!strcmp(mode, "GRID"))  imode = 2;
1434    TString ssource(source);
1435    TString basename = gSystem->BaseName(ssource.Data());
1436    if (!ssource.Length()) {
1437       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1438       return kFALSE;
1439    }
1440    // we have a source code so compile it
1441    if (ssource.EndsWith(".cxx")) {
1442      // need to copy it here other wise the path is also used on grid...
1443      ssource.Remove(ssource.Index(".cxx"));
1444      basename.Remove(basename.Index(".cxx"));
1445      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1446      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1447      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1448      // Path to code
1449      // only needed for local compilation, in grid and proof mode
1450      // the task headers are uploaded
1451      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1452      // Printf("LoadSources:: Including path %s",path.Data());
1453      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1454      Printf("LoadSources:: Loading...  path %s",basename.Data());
1455      switch (imode) {
1456      case 0:
1457        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1458        break;
1459      case 1:
1460        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1461        break;
1462      case 2:
1463        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1464        if (rec){
1465          // what we want to compile
1466          anaSources += Form("%s.cxx ",basename.Data());
1467          // what we need as input...
1468          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1469        }
1470        break;
1471      default:
1472        return kFALSE;
1473      }
1474    }
1475    if (result < 0) {
1476       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1477       return kFALSE;
1478    }
1479    return kTRUE;
1480 }
1481
1482
1483 //______________________________________________________________________________
1484 TChain *CreateChain(const char *mode, const char *plugin_mode)
1485 {
1486 // Create the input chain
1487    Int_t imode = -1;
1488    if (!strcmp(mode, "LOCAL")) imode = 0;
1489    if (!strcmp(mode, "PROOF")) imode = 1;
1490    if (!strcmp(mode, "GRID"))  imode = 2;
1491    TChain *chain = NULL;
1492    // Local chain
1493    switch (imode) {
1494       case 0:
1495          if (iAODanalysis) {
1496             if (!kLocalXMLDataset.Length()) {
1497                // Local AOD
1498                chain = new TChain("aodTree");
1499                TString line;
1500                ifstream in;
1501                in.open(kLocalDataList.Data());
1502                while (in.good()) {
1503                  in >> line;
1504                  if (line.Length() == 0) continue;
1505                  // cout << " line = " << line << endl;
1506                  chain->Add(line.Data());
1507                }
1508             } else {
1509                // Interactive AOD
1510                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1511             }
1512          } else {
1513            if (!kLocalXMLDataset.Length()) {
1514              // Local ESD
1515              chain = new TChain("esdTree");
1516              TString line;
1517              ifstream in;
1518              in.open(kLocalDataList.Data());
1519              while (in.good()) {
1520                in >> line;
1521                if (line.Length() == 0) continue;
1522                cout << " line = " << line << endl;
1523                chain->Add(line.Data());
1524              }
1525            } else {
1526              // Interactive ESD
1527                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1528            }
1529          }
1530          break;
1531       case 1:
1532          break;
1533       case 2:
1534          if (kPluginUse) {
1535 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1536 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1537          } else {
1538             TString           treeName = "esdTree";
1539             if (iAODanalysis) treeName = "aodTree";
1540             chain = CreateChainSingle("wn.xml", treeName);
1541          }
1542          break;
1543       default:
1544    }
1545    if (chain && chain->GetNtrees()) return chain;
1546    return NULL;
1547 }
1548
1549 //______________________________________________________________________________
1550 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1551 {
1552    printf("*******************************\n");
1553    printf("*** Getting the ESD Chain   ***\n");
1554    printf("*******************************\n");
1555    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
1556
1557    if (!myCollection) {
1558       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1559       return NULL ;
1560    }
1561
1562    TChain* chain = new TChain(treeName);
1563    myCollection->Reset() ;
1564    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1565    chain->ls();
1566    return chain;
1567 }
1568
1569 //______________________________________________________________________________
1570 Int_t SetupPar(char* pararchivename)
1571 {
1572    if (!pararchivename || !strlen(pararchivename)) return -1;
1573    char processline[1024];
1574    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1575       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1576          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1577         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1578                   Form("%s.par",pararchivename));
1579       } else {
1580          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1581          return -1;
1582       }
1583    }
1584    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1585    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1586
1587    TString ocwd = gSystem->WorkingDirectory();
1588    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1589
1590    // check for BUILD.sh and execute
1591    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1592       printf("*******************************\n");
1593       printf("*** Building PAR archive    ***\n");
1594       printf("*******************************\n");
1595       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1596          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1597          return -1;
1598       }
1599    }
1600
1601         // check for SETUP.C and execute
1602         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1603             printf("*******************************\n");
1604             printf("*** Setup PAR archive       ***\n");
1605             printf("*******************************\n");
1606             gROOT->Macro("PROOF-INF/SETUP.C");
1607         }
1608         if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1609    return 0;
1610 }
1611
1612 //______________________________________________________________________________
1613 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1614 {
1615 // Check if user has a valid token, otherwise make one. This has limitations.
1616 // One can always follow the standard procedure of calling alien-token-init then
1617 //   source /tmp/gclient_env_$UID in the current shell.
1618 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
1619    AliAnalysisAlien *plugin = new AliAnalysisAlien();
1620 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1621    plugin->SetRunMode(plugin_mode);
1622    if (kPluginUseProductionMode) plugin->SetProductionMode();
1623    plugin->SetJobTag(kJobTag);
1624    plugin->SetNtestFiles(2);
1625 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
1626 // Set versions of used packages
1627    plugin->SetAPIVersion("V1.1x");
1628    //   plugin->SetAPIVersion("V1.0x");
1629 //   plugin->SetAPIVersion("V2.4");
1630    plugin->SetROOTVersion(kPluginRootVersion);
1631    plugin->SetAliROOTVersion(kPluginAliRootVersion);
1632 // Declare input data to be processed.
1633 // Method 1: Create automatically XML collections using alien 'find' command.
1634 // Define production directory LFN
1635    plugin->SetGridDataDir(kGridDatadir.Data());
1636 // Set data search pattern
1637    if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
1638    //   else              plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1639    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
1640 // ...then add run numbers to be considered
1641 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1642    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1643      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1644      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1645    }
1646
1647    if(kGridLocalRunList.Length()>0){
1648      ifstream in1;
1649      in1.open(kGridLocalRunList.Data());
1650      int iRun;
1651      int icount = 0;
1652      /*
1653      char c;
1654      char cLine[250];
1655      while(!in1.eof()){
1656        c = in1.get();
1657        if ( (c >= '0') && (c <= '9') )
1658          {
1659            in1.putback (c);
1660            in1>>iRun;
1661            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1662            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1663        }
1664      else
1665        {
1666          in1.putback (c);
1667          in1.getline(cLine,250);
1668
1669        }
1670      }
1671      */
1672
1673      Int_t nRun = 0;
1674
1675      // just use run numbers, negatives will be excluded
1676      while(in1>>iRun){
1677        if(iRun>=0){
1678          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
1679            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1680            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1681
1682          }
1683          else{
1684            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1685          }
1686          nRun++;
1687        }
1688        else{
1689          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1690        }
1691      }
1692    }
1693
1694 // Method 2: Declare existing data files (raw collections, xml collections, root file)
1695 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1696 // XML collections added via this method can be combined with the first method if
1697 // the content is compatible (using or not tags)
1698 //   plugin->AddDataFile("tag.xml");
1699 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1700 // Define alien work directory where all files will be copied. Relative to alien $HOME.
1701    TString alien_workdir = "";
1702
1703    if (iAODanalysis)  alien_workdir += "analysisAOD";
1704    else               alien_workdir += "analysisESD";
1705    if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1706    plugin->SetGridWorkingDir(alien_workdir.Data());
1707
1708    // Declare alien output directory. Relative to working directory.
1709    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1710    plugin->SetGridOutputDir(kGridOutdir);
1711
1712    // Add external packages
1713    if (iJETAN||iDIJETAN) {
1714       plugin->AddExternalPackage("boost::v1_43_0");
1715       plugin->AddExternalPackage("cgal::v3.6");
1716       plugin->AddExternalPackage("fastjet::v2.4.2");
1717    }
1718
1719
1720    // set extra libs before par file compilation
1721    anaLibs += kGridExtraFiles;
1722    anaLibs     = anaLibs.Strip();
1723    Printf("anaLibs %s",anaLibs.Data());
1724    Printf("anaLibsExtra %s",anaLibsExtra.Data());
1725
1726    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
1727    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
1728
1729    TString ana_sources = "";
1730    TString ana_add = "";
1731    if (kUsePAR && anaPars.Length()) {
1732       printf("%s\n", anaPars.Data());
1733       TObjArray *arr;
1734       TObjString *objstr;
1735       arr = anaPars.Tokenize(" ");
1736       TIter next(arr);
1737       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1738       delete arr;
1739    }
1740
1741 // Declare the analysis source files names separated by blancs. To be compiled runtime
1742 // using ACLiC on the worker nodes.
1743    ana_sources = anaSources.Strip();
1744 // Declare all libraries (other than the default ones for the framework. These will be
1745 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1746
1747    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1748    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
1749    // Declare the output file names separated by blancs.
1750    // (can be like: file.root or file.root@ALICE::Niham::File)
1751    plugin->SetMergeExcludes(kGridMergeExclude);
1752    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1753    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
1754    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
1755    // Use fastread option
1756    plugin->SetFastReadOption(kPluginFastReadOption);
1757    // UseOverwrite mode
1758    plugin->SetOverwriteMode(kPluginOverwriteMode);
1759    // Optionally define the files to be archived.
1760    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
1761    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
1762
1763    // Put default output files to archive
1764    TString listhists = "";
1765    TString listaods  = "";
1766    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1767    TIter next(mgr->GetOutputs());
1768    AliAnalysisDataContainer *output;
1769    while ((output=(AliAnalysisDataContainer*)next())) {
1770       const char *filename = output->GetFileName();
1771       if (!(strcmp(filename, "default"))) {
1772         if (!mgr->GetOutputEventHandler()) continue;
1773          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
1774          if (listaods.Length()) listaods += " ";
1775          listaods += filename;
1776       } else {
1777         if(!listhists.Contains(filename)){
1778           if (listhists.Length()) listhists += " ";
1779           listhists += filename;
1780         }
1781       }
1782    }
1783
1784    if (mgr->GetExtraFiles().Length()) {
1785      if (listaods.Length()) listaods += " ";
1786      listaods += mgr->GetExtraFiles();
1787    }
1788
1789    // if we do not fill the aod we do not need to store it
1790    //   kGridMergeExclude = listaods;
1791
1792    if(kSaveAOD>=0){
1793      TString outputFiles =  "";
1794      outputFiles += mgr->GetExtraFiles();
1795      if (listhists.Length()) outputFiles += " ";
1796      outputFiles += listhists;
1797      plugin->SetDefaultOutputs(kFALSE);
1798      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1799      // remove
1800      // no harm done when we try to remove something that is not there :)
1801      if(!(kSaveAOD&(1<<0))){
1802        outputFiles.ReplaceAll("AliAOD.root ","");
1803        listaods.ReplaceAll("AliAOD.root ","");
1804      }
1805      if(!(kSaveAOD&(1<<1))){
1806        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
1807        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
1808
1809      }
1810      if(!(kSaveAOD&(1<<2))){
1811        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1812        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1813      }
1814      if(!(kSaveAOD&(1<<3))){
1815        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1816        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1817      }
1818
1819      //
1820      plugin->SetDefaultOutputs(kFALSE);
1821      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1822      plugin->SetOutputFiles(outputFiles.Data());
1823    }
1824
1825    TString outputArchive;
1826    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
1827    listaods.ReplaceAll(" ", ",");
1828    listhists.ReplaceAll(" ", ",");
1829    if (listhists.Length()){
1830      outputArchive += " ";
1831      outputArchive += "root_archive.zip:";
1832      outputArchive += listhists;
1833      if (listaods.Length()){
1834        outputArchive += ",";
1835        outputArchive += listaods;
1836      }
1837      outputArchive += Form("@%s", kGridOutputStorages.Data());
1838    }
1839    else{
1840
1841      if (listaods.Length()){
1842        // we have only aod'ish output
1843        outputArchive += " ";
1844        outputArchive += "root_archive.zip:";
1845        outputArchive += listaods;
1846        outputArchive += Form("@%s", kGridOutputStorages.Data());
1847      }
1848      else{
1849        // no other outputs than std..
1850       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
1851      }
1852    }
1853
1854    plugin->SetDefaultOutputs(kFALSE);
1855    plugin->SetOutputArchive(outputArchive);
1856
1857
1858    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
1859    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
1860    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
1861    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
1862    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
1863    //   plugin->SetMaxInitFailed(5);
1864    // Optionally resubmit threshold.
1865    // plugin->SetMasterResubmitThreshold(90);
1866    // Optionally set time to live (default 30000 sec)
1867    plugin->SetTTL(54000); // 15h...
1868    // Optionally set input format (default xml-single)
1869    plugin->SetInputFormat("xml-single");
1870    // Optionally modify the name of the generated JDL (default analysis.jdl)
1871    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
1872    // Optionally modify the executable name (default analysis.sh)
1873    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
1874    // Optionally modify job price (default 1)
1875    plugin->SetPrice(1);
1876    // Optionally modify split mode (default 'se')
1877    plugin->SetSplitMode("se");
1878    return plugin;
1879 }
1880
1881 //______________________________________________________________________________
1882 void WriteConfig()
1883 {
1884 // Write train configuration in a file. The file name has the format:
1885 // train_[trainName]_ddMonthyyyy_time.C
1886    if (kUseDate) {
1887       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
1888       ifstream fdate("date.tmp");
1889       if (!fdate.is_open()) {
1890          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
1891          return;
1892       }
1893       const char date[64];
1894       fdate.getline(date,64);
1895       fdate.close();
1896       gSystem->Exec("rm date.tmp");
1897       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
1898    } else {
1899       kTrainName = Form("train_%s", kTrainName.Data());
1900    }
1901    TString cdir = gSystem->WorkingDirectory();
1902    gSystem->MakeDirectory(kTrainName);
1903    gSystem->ChangeDirectory(kTrainName);
1904    ofstream out;
1905    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
1906    if (out.bad()) {
1907       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
1908       return;
1909    }
1910    out << "{" << endl;
1911    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
1912    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
1913    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
1914    if (kProofUseAFPAR)
1915       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
1916    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
1917    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
1918    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
1919    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
1920    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
1921    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
1922    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
1923    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1924    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
1925    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
1926    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
1927    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
1928    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
1929    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
1930    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
1931    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
1932    out << "   kUseMC           = " << kUseMC << ";" << endl;
1933    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
1934    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
1935    out << "   kUseTR           = " << kUseTR << ";" << endl;
1936    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
1937    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
1938    out << "   // Analysis modules" << endl;
1939    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
1940    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
1941    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
1942    out << "   iJETAN          = " << iJETAN << ";" << endl;
1943    out << "// Configuration fot the wagons" << endl;
1944    out << "}" << endl;
1945    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
1946    gSystem->ChangeDirectory(cdir);
1947 }
1948
1949 //______________________________________________________________________________
1950 Bool_t LoadConfig(const char *filename)
1951 {
1952 // Read train configuration from file
1953    if (gSystem->AccessPathName(filename)) {
1954       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1955       return kFALSE;
1956    }
1957    gROOT->ProcessLine(Form(".x %s", filename));
1958    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1959    return kTRUE;
1960 }
1961
1962 Bool_t PatchJDL(){
1963   Printf(">>> Patching JDL");
1964   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1965   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1966   TGridJDL *jdl = gridHandler->GetGridJDL();
1967   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
1968   gridHandler->WriteJDL(kFALSE);
1969   Printf("<<<  Patching JDL");
1970   return kTRUE;
1971 }
1972
1973 Bool_t PatchAnalysisMacro(){
1974   Printf(">>> Patching AnalysisMacro");
1975   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
1976
1977   ifstream in1;
1978   in1.open(Form("%s.C_tmp", kTrainName.Data()));
1979   char cLine[250];
1980   TString st;
1981   while(in1.getline(cLine,250)){
1982     st += cLine;
1983     st += "\n";
1984   }
1985   Int_t index= -1;
1986   index = st.Index("gSystem->Load(\"libPhysics\");");
1987   index += strlen("gSystem->Load(\"libPhysics\");");
1988   /*
1989     TObjArray *arr;
1990     TObjString *objstr;
1991     arr = anaLibs.Tokenize(" ");
1992     TIter next(arr);
1993
1994     add += "\n\n // added by CKB \n";
1995     while ((objstr=(TObjString*)next())){
1996       if(objstr->GetString().Contains("PWG3"))continue;
1997       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
1998     }
1999     delete arr;
2000     */
2001     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
2002   TString add = "";
2003
2004   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2005   add += "\n\n // added by CKB \n";
2006   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
2007   add += "\n gSystem->AddIncludePath(\"./\"); \n";
2008   add += "\n gSystem->SetFPEMask(); \n";
2009
2010
2011   if(gGrid&&kPluginAliRootVersion.Length()==0){
2012     add += "\n // Dirty hack for TRD reference data \n";
2013     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2014     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2015     add += "\"); \n";
2016   }
2017   add += "// BKC \n\n";
2018   st.Insert(index,add.Data());
2019
2020   if(kUseDebug){
2021     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2022   }
2023
2024   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2025     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
2026     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2027     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2028   }
2029
2030   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
2031     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
2032     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2033     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
2034   }
2035
2036   ofstream out;
2037   out.open(Form("%s.C", kTrainName.Data()));
2038   if (out.bad()) {
2039     return kFALSE;
2040   }
2041   out << st << endl;
2042   Printf("<<< Patching AnalysisMacro");
2043
2044
2045
2046
2047
2048   Printf(">>> Patching Merge Macro");
2049   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
2050
2051   ifstream in2;
2052   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
2053   TString st2;
2054   while(in2.getline(cLine,250)){
2055     st2 += cLine;
2056     st2 += "\n";
2057   }
2058   index = st2.Index("gSystem->Load(\"libPhysics\");");
2059   index += strlen("gSystem->Load(\"libPhysics\");");
2060   TString add2 = "";
2061   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
2062   if(gGrid&&kPluginAliRootVersion.Length()==0){
2063     add2 += "\n // Dirty hack for TRD reference data \n";
2064     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2065     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2066     add2 += "\"); \n";
2067   }
2068   add2 += "// BKC \n\n";
2069   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2070   st2.Insert(index,add.Data());
2071
2072
2073   if(kUseDebug){
2074     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2075   }
2076
2077   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2078     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
2079     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2080     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2081   }
2082
2083   // do not exclude the extra files from merign, this is done explicitly in this train script
2084   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2085   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2086   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
2087
2088
2089   ofstream out2;
2090   out2.open(Form("%s_merge.C", kTrainName.Data()));
2091   if (out2.bad()) {
2092     return kFALSE;
2093   }
2094   out2 << st2 << endl;
2095   Printf("<<< Patching Merging Macro");
2096
2097
2098
2099   return kTRUE;
2100
2101 }