PWGHF/hfe/AliAnalysisTaskHFE.cxx

   1 /**************************************************************************
   2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
   3 *                                                                        *
   4 * Author: The ALICE Off-line Project.                                    *
   5 * Contributors are mentioned in the code where appropriate.              *
   6 *                                                                        *
   7 * Permission to use, copy, modify and distribute this software and its   *
   8 * documentation strictly for non-commercial purposes is hereby granted   *
   9 * without fee, provided that the above copyright notice appears in all   *
  10 * copies and that both the copyright notice and this permission notice   *
  11 * appear in the supporting documentation. The authors make no claims     *
  12 * about the suitability of this software for any purpose. It is          *
  13 * provided "as is" without express or implied warranty.                  *
  14 **************************************************************************/
  15 //
  16 // The analysis task:
  17 // Filling an AliCFContainer with the quantities pt, eta and phi
  18 // for tracks which survivied the particle cuts (MC resp. ESD tracks)
  19 // Track selection is done using the AliHFE package
  20 //
  21 // Author:
  22 //  Raphaelle Bailhache <R.Bailhache@gsi.de>
  23 //  Markus Fasel <M.Fasel@gsi.de>
  24 //  Matus Kalisky <matus.kalisky@cern.ch>
  25 //  MinJung Kweon <minjung@physi.uni-heidelberg.de>
  26 //
  27 #include <TAxis.h>
  28 #include <TBits.h>
  29 #include <TCanvas.h>
  30 #include <TChain.h>
  31 #include <TDirectory.h>
  32 #include <TFile.h>
  33 #include <TH3D.h>
  34 #include <TIterator.h>
  35 #include <TList.h>
  36 #include <TLegend.h>
  37 #include <TMath.h>
  38 #include <TObjArray.h>
  39 #include <TObjString.h>
  40 #include <TParticle.h>
  41 #include <TProfile.h>
  42 #include <TString.h>
  43 #include <TF1.h>
  44 #include <TTree.h>
  45
  46 #include "AliAnalysisManager.h"
  47 #include "AliAODInputHandler.h"
  48 #include "AliAODMCParticle.h"
  49 #include "AliAODTrack.h"
  50 #include "AliAODVertex.h"
  51 #include "AliCentrality.h"
  52 #include "AliCFContainer.h"
  53 #include "AliCFManager.h"
  54 #include "AliESDEvent.h"
  55 #include "AliESDInputHandler.h"
  56 #include "AliESDtrack.h"
  57 #include "AliLog.h"
  58 #include "AliMCEvent.h"
  59 #include "AliMCEventHandler.h"
  60 #include "AliMCParticle.h"
  61 #include "AliMultiplicity.h"
  62 #include "AliPID.h"
  63 #include "AliPIDResponse.h"
  64 #include "AliOADBContainer.h"
  65 #include "AliStack.h"
  66 #include "AliTriggerAnalysis.h"
  67 #include "AliVVertex.h"
  68
  69 #include "AliHFEcollection.h"
  70 #include "AliHFEcontainer.h"
  71 #include "AliHFEcuts.h"
  72 #include "AliHFEelecbackground.h"
  73 #include "AliHFEmcQA.h"
  74 #include "AliHFEpairs.h"
  75 #include "AliHFEpid.h"
  76 #include "AliHFEpidQAmanager.h"
  77 #include "AliHFEpostAnalysis.h"
  78 #include "AliHFEsecVtxs.h"
  79 #include "AliHFEsecVtx.h"
  80 #include "AliHFEsignalCuts.h"
  81 #include "AliHFEtaggedTrackAnalysis.h"
  82 #include "AliHFEtools.h"
  83 #include "AliHFEvarManager.h"
  84 #include "AliAnalysisTaskHFE.h"
  85
  86 ClassImp(AliAnalysisTaskHFE)
  87
  88 //____________________________________________________________
  89 AliAnalysisTaskHFE::AliAnalysisTaskHFE():
  90   AliAnalysisTaskSE("PID efficiency Analysis")
  91   , fQAlevel(0)
  92   , fPlugins(0)
  93   , fFillSignalOnly(kTRUE)
  94   , fFillNoCuts(kFALSE)
  95   , fUseFlagAOD(kTRUE)
  96   , fApplyCutAOD(kFALSE)
  97   , fFlags(1<<4)
  98   , fBackGroundFactorApply(kFALSE)
  99   , fRemovePileUp(kFALSE)
 100   , fIdentifiedAsPileUp(kFALSE)
 101   , fIdentifiedAsOutInz(kFALSE)
 102   , fPassTheEventCut(kFALSE)
 103   , fRejectKinkMother(kTRUE)
 104   , fisppMultiBin(kFALSE)
 105   , fPbPbUserCentralityBinning(kFALSE)
 106   , fisNonHFEsystematics(kFALSE)
 107   , fSpecialTrigger(NULL)
 108   , fCentralityF(-1)
 109   , fCentralityPercent(-1)
 110   , fContributors(0.5)
 111   , fWeightBackGround(0.)
 112   , fVz(0.0)
 113   , fHadronBackgroundOADB(NULL)
 114   , fContainer(NULL)
 115   , fVarManager(NULL)
 116   , fSignalCuts(NULL)
 117   , fCFM(NULL)
 118   , fTriggerAnalysis(NULL)
 119   , fPID(NULL)
 120   , fPIDqa(NULL)
 121   , fPIDpreselect(NULL)
 122   , fCuts(NULL)
 123   , fTaggedTrackCuts(NULL)
 124   , fCleanTaggedTrack(kFALSE)
 125   , fVariablesTRDTaggedTrack(kFALSE)
 126   , fCutspreselect(NULL)
 127   , fSecVtx(NULL)
 128   , fElecBackGround(NULL)
 129   , fMCQA(NULL)
 130   , fTaggedTrackAnalysis(NULL)
 131   , fExtraCuts(NULL)
 132   , fQA(NULL)
 133   , fOutput(NULL)
 134   , fHistMCQA(NULL)
 135   , fHistSECVTX(NULL)
 136   , fHistELECBACKGROUND(NULL)
 137   , fQACollection(NULL)
 138 {
 139   //
 140   // Dummy constructor
 141   //
 142   memset(fElecBackgroundFactor, 0, sizeof(Double_t) * kElecBgSpecies * kBgPtBins * kCentBins * kBgLevels);
 143   memset(fkBackGroundFactorArray, 0, sizeof(TF1 *) * 12);
 144   memset(fBinLimit, 0, sizeof(Double_t) * (kBgPtBins+1));
 145   memset(&fisppMultiBin, kFALSE, sizeof(fisppMultiBin));
 146   memset(fCentralityLimits, 0, sizeof(Float_t) * 12);
 147
 148
 149 }
 150
 151 //____________________________________________________________
 152 AliAnalysisTaskHFE::AliAnalysisTaskHFE(const char * name):
 153   AliAnalysisTaskSE(name)
 154   , fQAlevel(0)
 155   , fPlugins(0)
 156   , fFillSignalOnly(kTRUE)
 157   , fFillNoCuts(kFALSE)
 158   , fUseFlagAOD(kTRUE)
 159   , fApplyCutAOD(kFALSE)
 160   , fFlags(1<<4)
 161   , fBackGroundFactorApply(kFALSE)
 162   , fRemovePileUp(kFALSE)
 163   , fIdentifiedAsPileUp(kFALSE)
 164   , fIdentifiedAsOutInz(kFALSE)
 165   , fPassTheEventCut(kFALSE)
 166   , fRejectKinkMother(kTRUE)
 167   , fisppMultiBin(kFALSE)
 168   , fPbPbUserCentralityBinning(kFALSE)
 169   , fisNonHFEsystematics(kFALSE)
 170   , fSpecialTrigger(NULL)
 171   , fCentralityF(-1)
 172   , fCentralityPercent(-1)
 173   , fContributors(0.5)
 174   , fWeightBackGround(0.)
 175   , fVz(0.0)
 176   , fHadronBackgroundOADB(NULL)
 177   , fContainer(NULL)
 178   , fVarManager(NULL)
 179   , fSignalCuts(NULL)
 180   , fCFM(NULL)
 181   , fTriggerAnalysis(NULL)
 182   , fPID(NULL)
 183   , fPIDqa(NULL)
 184   , fPIDpreselect(NULL)
 185   , fCuts(NULL)
 186   , fTaggedTrackCuts(NULL)
 187   , fCleanTaggedTrack(kFALSE)
 188   , fVariablesTRDTaggedTrack(kFALSE)
 189   , fCutspreselect(NULL)
 190   , fSecVtx(NULL)
 191   , fElecBackGround(NULL)
 192   , fMCQA(NULL)
 193   , fTaggedTrackAnalysis(NULL)
 194   , fExtraCuts(NULL)
 195   , fQA(NULL)
 196   , fOutput(NULL)
 197   , fHistMCQA(NULL)
 198   , fHistSECVTX(NULL)
 199   , fHistELECBACKGROUND(NULL)
 200   , fQACollection(0x0)
 201 {
 202   //
 203   // Default constructor
 204   //
 205   DefineOutput(1, TList::Class());
 206   DefineOutput(2, TList::Class());
 207
 208   fPID = new AliHFEpid("hfePid");
 209   fPIDqa = new AliHFEpidQAmanager;
 210   fVarManager = new AliHFEvarManager("hfeVarManager");
 211
 212   memset(fElecBackgroundFactor, 0, sizeof(Double_t) * kElecBgSpecies * kBgPtBins * kCentBins * kBgLevels);
 213   memset(fkBackGroundFactorArray, 0, sizeof(TF1 *) * 12);
 214   memset(fBinLimit, 0, sizeof(Double_t) * (kBgPtBins+1));
 215   memset(&fisppMultiBin, kFALSE, sizeof(fisppMultiBin));
 216   memset(fCentralityLimits, 0, sizeof(Float_t) * 12);
 217
 218 }
 219
 220 //____________________________________________________________
 221 AliAnalysisTaskHFE::AliAnalysisTaskHFE(const AliAnalysisTaskHFE &ref):
 222   AliAnalysisTaskSE(ref)
 223   , fQAlevel(0)
 224   , fPlugins(0)
 225   , fFillSignalOnly(ref.fFillSignalOnly)
 226   , fFillNoCuts(ref.fFillNoCuts)
 227   , fUseFlagAOD(ref.fUseFlagAOD)
 228   , fApplyCutAOD(ref.fApplyCutAOD)
 229   , fFlags(ref.fFlags)
 230   , fBackGroundFactorApply(ref.fBackGroundFactorApply)
 231   , fRemovePileUp(ref.fRemovePileUp)
 232   , fIdentifiedAsPileUp(ref.fIdentifiedAsPileUp)
 233   , fIdentifiedAsOutInz(ref.fIdentifiedAsOutInz)
 234   , fPassTheEventCut(ref.fPassTheEventCut)
 235   , fRejectKinkMother(ref.fRejectKinkMother)
 236   , fisppMultiBin(ref.fisppMultiBin)
 237   , fPbPbUserCentralityBinning(ref.fPbPbUserCentralityBinning)
 238   , fisNonHFEsystematics(ref.fisNonHFEsystematics)
 239   , fSpecialTrigger(ref.fSpecialTrigger)
 240   , fCentralityF(ref.fCentralityF)
 241   , fCentralityPercent(ref.fCentralityPercent)
 242   , fContributors(ref.fContributors)
 243   , fWeightBackGround(ref.fWeightBackGround)
 244   , fVz(ref.fVz)
 245   , fHadronBackgroundOADB(ref.fHadronBackgroundOADB)
 246   , fContainer(NULL)
 247   , fVarManager(NULL)
 248   , fSignalCuts(NULL)
 249   , fCFM(NULL)
 250   , fTriggerAnalysis(NULL)
 251   , fPID(NULL)
 252   , fPIDqa(NULL)
 253   , fPIDpreselect(NULL)
 254   , fCuts(NULL)
 255   , fTaggedTrackCuts(NULL)
 256   , fCleanTaggedTrack(ref.fCleanTaggedTrack)
 257   , fVariablesTRDTaggedTrack(ref.fVariablesTRDTaggedTrack)
 258   , fCutspreselect(NULL)
 259   , fSecVtx(NULL)
 260   , fElecBackGround(NULL)
 261   , fMCQA(NULL)
 262   , fTaggedTrackAnalysis(NULL)
 263   , fExtraCuts(NULL)
 264   , fQA(NULL)
 265   , fOutput(NULL)
 266   , fHistMCQA(NULL)
 267   , fHistSECVTX(NULL)
 268   , fHistELECBACKGROUND(NULL)
 269   , fQACollection(NULL)
 270 {
 271   //
 272   // Copy Constructor
 273   //
 274   ref.Copy(*this);
 275 }
 276
 277 //____________________________________________________________
 278 AliAnalysisTaskHFE &AliAnalysisTaskHFE::operator=(const AliAnalysisTaskHFE &ref){
 279   //
 280   // Assignment operator
 281   //
 282   if(this == &ref)
 283     ref.Copy(*this);
 284   return *this;
 285 }
 286
 287 //____________________________________________________________
 288 void AliAnalysisTaskHFE::Copy(TObject &o) const {
 289   //
 290   // Copy into object o
 291   //
 292   AliAnalysisTaskHFE &target = dynamic_cast<AliAnalysisTaskHFE &>(o);
 293   target.fQAlevel = fQAlevel;
 294   target.fPlugins = fPlugins;
 295   target.fFillSignalOnly = fFillSignalOnly;
 296   target.fFillNoCuts = fFillNoCuts;
 297   target.fUseFlagAOD = fUseFlagAOD;
 298   target.fApplyCutAOD = fApplyCutAOD;
 299   target.fFlags = fFlags;
 300   target.fBackGroundFactorApply = fBackGroundFactorApply;
 301   target.fRemovePileUp = fRemovePileUp;
 302   target.fIdentifiedAsPileUp = fIdentifiedAsPileUp;
 303   target.fIdentifiedAsOutInz = fIdentifiedAsOutInz;
 304   target.fPassTheEventCut = fPassTheEventCut;
 305   target.fRejectKinkMother = fRejectKinkMother;
 306   target.fisppMultiBin =   fisppMultiBin;
 307   target.fPbPbUserCentralityBinning = fPbPbUserCentralityBinning;
 308   target.fisNonHFEsystematics = fisNonHFEsystematics;
 309   target.fSpecialTrigger = fSpecialTrigger;
 310   target.fCentralityF = fCentralityF;
 311   target.fCentralityPercent = fCentralityPercent;
 312   target.fContributors = fContributors;
 313   target.fWeightBackGround = fWeightBackGround;
 314   target.fVz = fVz;
 315   target.fHadronBackgroundOADB = fHadronBackgroundOADB;
 316   target.fContainer = fContainer;
 317   target.fVarManager = fVarManager;
 318   target.fSignalCuts = fSignalCuts;
 319   target.fCFM = fCFM;
 320   target.fTriggerAnalysis = fTriggerAnalysis;
 321   target.fPID = fPID;
 322   target.fPIDqa = fPIDqa;
 323   target.fPIDpreselect = fPIDpreselect;
 324   target.fCuts = fCuts;
 325   target.fTaggedTrackCuts = fTaggedTrackCuts;
 326   target.fCleanTaggedTrack = fCleanTaggedTrack;
 327   target.fVariablesTRDTaggedTrack = fVariablesTRDTaggedTrack;
 328   target.fCutspreselect = fCutspreselect;
 329   target.fSecVtx = fSecVtx;
 330   target.fElecBackGround = fElecBackGround;
 331   target.fMCQA = fMCQA;
 332   target.fTaggedTrackAnalysis = fTaggedTrackAnalysis;
 333   target.fExtraCuts = fExtraCuts;
 334   target.fQA = fQA;
 335   target.fOutput = fOutput;
 336   target.fHistMCQA = fHistMCQA;
 337   target.fHistSECVTX = fHistSECVTX;
 338   target.fHistELECBACKGROUND = fHistELECBACKGROUND;
 339   target.fQACollection = fQACollection;
 340 }
 341
 342 //____________________________________________________________
 343 AliAnalysisTaskHFE::~AliAnalysisTaskHFE(){
 344   //
 345   // Destructor
 346   //
 347   if(fPID) delete fPID;
 348   if(fPIDpreselect) delete fPIDpreselect;
 349   if(fVarManager) delete fVarManager;
 350   if(fCFM) delete fCFM;
 351   if(fTriggerAnalysis) delete fTriggerAnalysis;
 352   if(fSignalCuts) delete fSignalCuts;
 353   if(fSecVtx) delete fSecVtx;
 354   if(fMCQA) delete fMCQA;
 355   if(fElecBackGround) delete fElecBackGround;
 356   if(fSpecialTrigger) delete fSpecialTrigger;
 357   // Delete output objects only if we are not running in PROOF mode because otherwise this produces a crash during merging
 358   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
 359   if(mgr && mgr->GetAnalysisType() != AliAnalysisManager::kProofAnalysis){
 360     if(fPIDqa) delete fPIDqa;
 361     if(fOutput) delete fOutput;
 362     if(fQA) delete fQA;
 363   }
 364 }
 365
 366 //____________________________________________________________
 367 void AliAnalysisTaskHFE::UserCreateOutputObjects(){
 368   //
 369   // Creating output container and output objects
 370   // Here we also Initialize the correction framework container and
 371   // the objects for
 372   // - PID
 373   // - MC QA
 374   // - SecVtx
 375   // QA histograms are created if requested
 376   // Called once per worker
 377   //
 378   AliDebug(3, "Creating Output Objects");
 379   // Automatic determination of the analysis mode
 380   AliVEventHandler *inputHandler = dynamic_cast<AliVEventHandler *>(AliAnalysisManager::GetAnalysisManager()->GetInputEventHandler());
 381   if(!TString(inputHandler->IsA()->GetName()).CompareTo("AliAODInputHandler")){
 382     SetAODAnalysis();
 383   } else {
 384     SetESDAnalysis();
 385     if(AliAnalysisManager::GetAnalysisManager()->GetMCtruthEventHandler())
 386       SetHasMCData();
 387   }
 388   printf("Analysis Mode: %s Analysis\n", IsAODanalysis() ? "AOD" : "ESD");
 389   printf("MC Data available %s\n", HasMCData() ? "Yes" : "No");
 390
 391   // Enable Trigger Analysis
 392   fTriggerAnalysis = new AliTriggerAnalysis;
 393   fTriggerAnalysis->EnableHistograms();
 394   fTriggerAnalysis->SetAnalyzeMC(HasMCData());
 395
 396
 397   // Make lists for Output
 398   if(!fQA) fQA = new TList;
 399   fQA->SetOwner();
 400   if(!fOutput) fOutput = new TList;
 401   fOutput->SetOwner();
 402
 403   // First Part: Make QA histograms
 404   fQACollection = new AliHFEcollection("TaskQA", "QA histos from the Electron Task");
 405   fQACollection->CreateTH1F("nElectronTracksEvent", "Number of Electron Candidates", 100, 0, 100);
 406   fQACollection->CreateTH1F("nElectron", "Number of electrons", 100, 0, 100);
 407   fQACollection->CreateTH2F("radius", "Production Vertex", 100, 0.0, 5.0, 100, 0.0, 5.0);
 408   fQACollection->CreateTH2F("TPCdEdxBeforePID", "TPC dE/dx; p (GeV/c); TPC dE/dx (a.u.)", 1000, 0., 10., 200, 0., 200.);
 409   fQACollection->CreateTH2F("TPCnSigmaBeforePID", "TPC dE/dx; p (GeV/c); TPC dE/dx - <TPC dE/dx>|_{el} (#sigma)", 1000, 0., 10., 1000, -10., 10.);
 410
 411   InitPIDperformanceQA();
 412   InitContaminationQA();
 413   InitHistoITScluster();
 414   fQA->Add(fQACollection);
 415
 416   // Initialize PID
 417   fPID->SetHasMCData(HasMCData());
 418   if(!fPID->GetNumberOfPIDdetectors()) fPID->AddDetector("TPC", 0);
 419   if(IsQAOn(kPIDqa)){
 420     AliInfo("PID QA switched on");
 421     fPIDqa->Initialize(fPID);
 422     fQA->Add(fPIDqa->MakeList("HFEpidQA"));
 423   }
 424   fPID->SortDetectors();
 425
 426   // Initialize correction Framework and Cuts
 427   const Int_t kNcutSteps = AliHFEcuts::kNcutStepsMCTrack + AliHFEcuts::kNcutStepsRecTrack + AliHFEcuts::kNcutStepsDETrack + AliHFEcuts::kNcutStepsSecvtxTrack;
 428   fCFM = new AliCFManager;
 429   fCFM->SetNStepParticle(kNcutSteps);
 430   MakeParticleContainer();
 431   MakeEventContainer();
 432   // Temporary fix: Initialize particle cuts with NULL
 433   for(Int_t istep = 0; istep < kNcutSteps; istep++)
 434     fCFM->SetParticleCutsList(istep, NULL);
 435   if(!fCuts){
 436     AliWarning("Cuts not available. Default cuts will be used");
 437     fCuts = new AliHFEcuts;
 438     fCuts->CreateStandardCuts();
 439   }
 440   if(IsAODanalysis()) fCuts->SetAOD();
 441   // Make clone for V0 tagging step
 442   fCuts->Initialize(fCFM);
 443   if(fCuts->IsQAOn()) fQA->Add(fCuts->GetQAhistograms());
 444   fSignalCuts = new AliHFEsignalCuts("HFEsignalCuts", "HFE MC Signal definition");
 445   fVarManager->SetSignalCuts(fSignalCuts);
 446
 447   // add output objects to the List
 448   fOutput->AddAt(fContainer, 0);
 449   fOutput->AddAt(fCFM->GetEventContainer(), 1);
 450
 451   // mcQA----------------------------------
 452   if (HasMCData() && IsQAOn(kMCqa)) {
 453     AliInfo("MC QA on");
 454     if(!fMCQA) fMCQA = new AliHFEmcQA;
 455     if(!fHistMCQA) fHistMCQA = new TList();
 456     fHistMCQA->SetOwner();
 457     if(IsPbPb()) fMCQA->SetPbPb();
 458     if(fisppMultiBin) fMCQA->SetPPMultiBin();
 459     if(TestBit(kTreeStream)){
 460       fMCQA->EnableDebugStreamer();
 461     }
 462     fMCQA->CreatDefaultHistograms(fHistMCQA);
 463     fMCQA->SetBackgroundWeightFactor(fElecBackgroundFactor[0][0][0],fBinLimit);
 464     fQA->Add(fHistMCQA);
 465   }
 466
 467   // secvtx----------------------------------
 468   if (GetPlugin(kSecVtx)) {
 469     AliInfo("Secondary Vertex Analysis on");
 470     if(!fSecVtx) fSecVtx = new AliHFEsecVtx;
 471     fSecVtx->SetHasMCData(HasMCData());
 472
 473     if(!fHistSECVTX) fHistSECVTX = new TList();
 474     fHistSECVTX->SetOwner();
 475     fSecVtx->CreateHistograms(fHistSECVTX);
 476     fOutput->Add(fHistSECVTX);
 477   }
 478
 479   // background----------------------------------
 480   if (GetPlugin(kIsElecBackGround)) {
 481     AliInfo("Electron BackGround Analysis on");
 482     if(!fElecBackGround){
 483       AliWarning("ElecBackGround not available. Default elecbackground will be used");
 484       fElecBackGround = new AliHFEelecbackground;
 485     }
 486     fElecBackGround->SetHasMCData(HasMCData());
 487
 488     if(!fHistELECBACKGROUND) fHistELECBACKGROUND = new TList();
 489     fHistELECBACKGROUND->SetOwner();
 490     fElecBackGround->CreateHistograms(fHistELECBACKGROUND);
 491     fOutput->Add(fHistELECBACKGROUND);
 492   }
 493
 494   // tagged tracks
 495   if(GetPlugin(kTaggedTrackAnalysis)){
 496     AliInfo("Analysis on V0-tagged tracks enabled");
 497     fTaggedTrackAnalysis = new AliHFEtaggedTrackAnalysis(Form("taggedTrackAnalysis%s", GetName()));
 498     fTaggedTrackAnalysis->SetCuts(fTaggedTrackCuts);
 499     fTaggedTrackAnalysis->SetClean(fCleanTaggedTrack);
 500     AliHFEvarManager *varManager = fTaggedTrackAnalysis->GetVarManager();
 501     TObjArray *array = fVarManager->GetVariables();
 502     Int_t nvars = array->GetEntriesFast();
 503     TString namee;
 504     for(Int_t v = 0; v < nvars; v++) {
 505       AliHFEvarManager::AliHFEvariable *variable = (AliHFEvarManager::AliHFEvariable *) array->At(v);
 506       if(!variable) continue;
 507       TString name(((AliHFEvarManager::AliHFEvariable *)variable)->GetName());
 508       if(!name.CompareTo("source")) namee = TString("species");
 509       else namee = TString(name);
 510       Int_t nbins = variable->GetNumberOfBins();
 511       if(variable->HasUserDefinedBinning()){
 512         varManager->AddVariable(namee, nbins, variable->GetBinning());
 513       } else {
 514         varManager->AddVariable(namee, nbins, variable->GetMinimum(), variable->GetMaximum());
 515       }
 516       //printf("For AliTaggedTrackAnalysis, had the variable %s and the one used %s\n",(const char*)variable->GetName(),(const char*) namee);
 517     }
 518     if(fPIDqa->HasHighResolutionHistos())
 519       fTaggedTrackAnalysis->GetPIDqa()->SetHighResolutionHistos();
 520     fTaggedTrackAnalysis->SetPID(fPID);
 521     fTaggedTrackAnalysis->SetVariablesTRD(fVariablesTRDTaggedTrack);
 522     fTaggedTrackAnalysis->InitContainer();
 523     fOutput->Add(fTaggedTrackAnalysis->GetContainer());
 524     fQA->Add(fTaggedTrackAnalysis->GetPIDQA());
 525     fQA->Add(fTaggedTrackAnalysis->GetCutQA());
 526     fQA->Add(fTaggedTrackAnalysis->GetQAcollection());
 527   }
 528
 529   PrintStatus();
 530   // Done!!!
 531   PostData(1, fOutput);
 532   PostData(2, fQA);
 533 }
 534
 535 //____________________________________________________________
 536 void AliAnalysisTaskHFE::UserExec(Option_t *){
 537   //
 538   // Run the analysis
 539   //
 540   AliDebug(3, "Starting Single Event Analysis");
 541   if(!fInputEvent){
 542     AliError("Reconstructed Event not available");
 543     return;
 544   }
 545   if(HasMCData()){
 546     AliDebug(4, Form("MC Event: %p", fMCEvent));
 547     if(!fMCEvent){
 548       AliError("No MC Event, but MC Data required");
 549       return;
 550     }
 551   }
 552   if(!fCuts){
 553     AliError("HFE cuts not available");
 554     return;
 555   }
 556   if(!fPID->IsInitialized()){
 557     // Initialize PID with the given run number
 558     fPID->InitializePID(fInputEvent->GetRunNumber());
 559   }
 560
 561   // Initialize hadronic background from OADB Container
 562   AliDebug(2, Form("Apply background factors: %s, OADB Container %p", fBackGroundFactorApply ? "Yes" : "No", fHadronBackgroundOADB));
 563   if(fBackGroundFactorApply && !TestBit(kBackgroundInitialized)){
 564     AliDebug(2, "Initializing Background from OADB");
 565     if(!InitializeHadronBackground(fInputEvent->GetRunNumber())) AliError("Failed initializing hadronic background parameterization from OADB");
 566     else AliDebug(2, "Successfully loaded Background from OADB");
 567     SetBit(kBackgroundInitialized);
 568   }
 569
 570   if(IsESDanalysis() && HasMCData()){
 571     // Protect against missing MC trees
 572     AliMCEventHandler *mcH = dynamic_cast<AliMCEventHandler *>(AliAnalysisManager::GetAnalysisManager()->GetMCtruthEventHandler());
 573     if(!mcH){
 574       AliError("No MC Event Handler available");
 575       return;
 576     }
 577     if(!mcH->InitOk()) return;
 578     if(!mcH->TreeK()) return;
 579     if(!mcH->TreeTR()) return;
 580   }
 581
 582   // need the centrality for everything (MC also)
 583   fCentralityF = -1;
 584   if(!ReadCentrality()) fCentralityF = -1;
 585   //printf("pass centrality\n");
 586   //printf("Reading fCentralityF %f\n",fCentralityF);
 587
 588   // See if pile up and z in the range
 589   RejectionPileUpVertexRangeEventCut();
 590
 591   // Protect agains missing
 592   if(HasMCData()){
 593     //printf("Has MC data\n");
 594     fSignalCuts->SetMCEvent(fMCEvent);
 595     ProcessMC();  // Run the MC loop + MC QA in case MC Data are available
 596   }
 597
 598   AliPIDResponse *pidResponse = fInputHandler->GetPIDResponse();
 599   if(!pidResponse){
 600     AliDebug(1, "Using default PID Response");
 601     pidResponse = AliHFEtools::GetDefaultPID(HasMCData(), fInputEvent->IsA() == AliESDEvent::Class());
 602   }
 603   fPID->SetPIDResponse(pidResponse);
 604   if(fPIDpreselect) fPIDpreselect->SetPIDResponse(pidResponse);
 605
 606   // Event loop
 607   if(IsAODanalysis()){
 608     //printf("test\n");
 609     ProcessAOD();
 610   } else {
 611     const char *specialTrigger = GetSpecialTrigger(fInputEvent->GetRunNumber());
 612     // Check Trigger selection
 613     if(specialTrigger){
 614       AliDebug(2, Form("Special Trigger requested: %s", specialTrigger));
 615       AliESDEvent *ev = dynamic_cast<AliESDEvent *>(fInputEvent);
 616       if(!(ev && ev->IsTriggerClassFired(specialTrigger))){
 617         AliDebug(2, "Event not selected");
 618         return;
 619       } else AliDebug(2, "Event Selected");
 620     } else AliDebug(2, "No Special Trigger requested");
 621
 622     ProcessESD();
 623   }
 624   // Done!!!
 625   PostData(1, fOutput);
 626   PostData(2, fQA);
 627 }
 628
 629 //____________________________________________________________
 630 void AliAnalysisTaskHFE::Terminate(Option_t *){
 631   //
 632   // Terminate not implemented at the moment
 633   //
 634   if(GetPlugin(kPostProcess)){
 635     fOutput = dynamic_cast<TList *>(GetOutputData(1));
 636     fQA = dynamic_cast<TList *>(GetOutputData(2));
 637     if(!fOutput){
 638       AliError("Results not available");
 639       return;
 640     }
 641     if(!fQA){
 642       AliError("QA output not available");
 643       return;
 644     }
 645     fContainer = dynamic_cast<AliHFEcontainer *>(fOutput->FindObject("trackContainer"));
 646     if(!fContainer){
 647       AliError("Track container not found");
 648       return;
 649     }
 650     AliHFEpostAnalysis postanalysis;
 651     postanalysis.SetTaskResults(fContainer);
 652     TList *qalist = dynamic_cast<TList *>(fQA->FindObject("list_TaskQA"));
 653     if(!qalist){
 654       AliError("QA List not found");
 655       return;
 656     }
 657     postanalysis.SetTaskQA(qalist);
 658     printf("Running post analysis\n");
 659     //if(HasMCData())
 660     postanalysis.DrawMCSignal2Background();
 661     postanalysis.DrawEfficiency();
 662     postanalysis.DrawPIDperformance();
 663     postanalysis.DrawCutEfficiency();
 664
 665     if (GetPlugin(kIsElecBackGround)) {
 666       AliHFEelecbackground elecBackGround;
 667       TList *oe = 0x0;
 668       if(!(oe = (TList*)dynamic_cast<TList *>(fOutput->FindObject("HFEelecbackground")))){
 669         return;
 670       }
 671       elecBackGround.Load(oe);
 672       elecBackGround.Plot();
 673       elecBackGround.PostProcess();
 674     }
 675   }
 676 }
 677 //_______________________________________________________________
 678 Bool_t AliAnalysisTaskHFE::IsEventInBinZero() {
 679   //
 680   //
 681   //
 682
 683   //printf("test in IsEventInBinZero\n");
 684   if(!fInputEvent){
 685     AliError("Reconstructed Event not available");
 686     return kFALSE;
 687   }
 688
 689   // check vertex
 690   const AliVVertex *vertex = fInputEvent->GetPrimaryVertex();
 691   if(!vertex) return kTRUE;
 692   //if(vertex) return kTRUE;
 693
 694   // check tracks
 695   if(fInputEvent->GetNumberOfTracks()<=0) return kTRUE;
 696   //if(fInputEvent->GetNumberOfTracks()>0) return kTRUE;
 697
 698
 699   return kFALSE;
 700
 701 }
 702 //____________________________________________________________
 703 void AliAnalysisTaskHFE::ProcessMC(){
 704   //
 705   // Runs the MC Loop (filling the container for the MC Cut Steps with the observables pt, eta and phi)
 706   // In case MC QA is on also MC QA loop is done
 707   //
 708   AliDebug(3, "Processing MC Information");
 709   Double_t eventContainer [4];
 710   eventContainer[0] = fMCEvent->GetPrimaryVertex()->GetZ();
 711   eventContainer[2] = fCentralityF;
 712   eventContainer[3] = fContributors;
 713   fVz = eventContainer[0];
 714   //printf("z position is %f\n",eventContainer[0]);
 715   //if(fCFM->CheckEventCuts(AliHFEcuts::kEventStepGenerated, fMCEvent))
 716   fCFM->GetEventContainer()->Fill(eventContainer,AliHFEcuts::kEventStepGenerated);
 717   Int_t nElectrons = 0;
 718   if(IsESDanalysis()){
 719    if(!((fIdentifiedAsPileUp) || (TMath::Abs(fVz) > fCuts->GetVertexRange()) || (fCentralityF < 0))){ //kStepMCGeneratedZOutNoPileUpCentralityFine
 720     if (HasMCData() && IsQAOn(kMCqa)) {
 721       AliDebug(2, "Running MC QA");
 722
 723       if(fMCEvent->Stack()){
 724         fMCQA->SetMCEvent(fMCEvent);
 725         fMCQA->SetGenEventHeader(fMCEvent->GenEventHeader());
 726         fMCQA->SetCentrality(fCentralityF);
 727         fMCQA->SetPercentrality(fCentralityPercent);
 728         if(IsPbPb()) { fMCQA->SetPbPb();}
 729         else
 730         {
 731             if(fisppMultiBin) fMCQA->SetPPMultiBin();
 732             else fMCQA->SetPP();
 733         }
 734         fMCQA->Init();
 735
 736         fMCQA->GetMesonKine();
 737
 738         // loop over all tracks for decayed electrons
 739         for (Int_t igen = 0; igen < fMCEvent->GetNumberOfTracks(); igen++){
 740           TParticle* mcpart = fMCEvent->Stack()->Particle(igen);
 741           if(!mcpart) continue;
 742           fMCQA->GetQuarkKine(mcpart, igen, AliHFEmcQA::kCharm);
 743           fMCQA->GetQuarkKine(mcpart, igen, AliHFEmcQA::kBeauty);
 744           fMCQA->GetHadronKine(mcpart, AliHFEmcQA::kCharm);
 745           fMCQA->GetHadronKine(mcpart, AliHFEmcQA::kBeauty);
 746           fMCQA->GetDecayedKine(mcpart, AliHFEmcQA::kCharm,  AliHFEmcQA::kElectronPDG); // no accept cut
 747           fMCQA->GetDecayedKine(mcpart, AliHFEmcQA::kBeauty, AliHFEmcQA::kElectronPDG); // no accept cut
 748           fMCQA->GetDecayedKine(mcpart, AliHFEmcQA::kOthers, AliHFEmcQA::kElectronPDG); // no accept cut
 749         }
 750         //fMCQA->EndOfEventAna(AliHFEmcQA::kCharm);
 751         //fMCQA->EndOfEventAna(AliHFEmcQA::kBeauty);
 752       }
 753
 754     } // end of MC QA loop
 755    }
 756    // -----------------------------------------------------------------
 757    fCFM->SetMCEventInfo(fMCEvent);
 758    // fCFM->CheckEventCuts(AliCFManager::kEvtRecCuts, fESD);
 759   } else {
 760     fCFM->SetMCEventInfo(fInputEvent);
 761   }
 762   // Run MC loop
 763   AliVParticle *mctrack = NULL;
 764   AliDebug(3, Form("Number of Tracks: %d", fMCEvent->GetNumberOfTracks()));
 765   for(Int_t imc = 0; imc <fMCEvent->GetNumberOfTracks(); imc++){
 766     if(!(mctrack = fMCEvent->GetTrack(imc))) continue;
 767     AliDebug(4, "Next MC Track");
 768     if(ProcessMCtrack(mctrack)) nElectrons++;
 769   }
 770
 771   // fCFM->CheckEventCuts(AliCFManager::kEvtRecCuts, fESD);
 772   fQACollection->Fill("nElectron", nElectrons);
 773 }
 774
 775 //____________________________________________________________
 776 void AliAnalysisTaskHFE::ProcessESD(){
 777   //
 778   // Run Analysis of reconstructed event in ESD Mode
 779   // Loop over Tracks, filter according cut steps defined in AliHFEcuts
 780   //
 781   AliDebug(1, Form("Task %s", GetName()));
 782   AliDebug(3, "Processing ESD Event");
 783   AliESDEvent *fESD = dynamic_cast<AliESDEvent *>(fInputEvent);
 784   if(!fESD){
 785     AliError("ESD Event required for ESD Analysis");
 786     return;
 787   }
 788
 789   // Set magnetic field if V0 task on
 790   if(fTaggedTrackAnalysis) {
 791     fTaggedTrackAnalysis->SetMagneticField(fESD->GetMagneticField());
 792     fTaggedTrackAnalysis->SetCentrality(fCentralityF);
 793     if(IsPbPb()) fTaggedTrackAnalysis->SetPbPb();
 794     else fTaggedTrackAnalysis->SetPP();
 795   }
 796
 797   // Do event Normalization
 798   Double_t eventContainer[4];
 799   eventContainer[0] = 0.;
 800   if(HasMCData()) eventContainer[0] = fVz;
 801   else {
 802     if(fESD->GetPrimaryVertexSPD()) eventContainer[0] = fESD->GetPrimaryVertexSPD()->GetZ();
 803   }
 804   eventContainer[1] = 0.;
 805   eventContainer[2] = fCentralityF;
 806   eventContainer[3] = fContributors;
 807   if(fTriggerAnalysis->IsOfflineTriggerFired(fESD, AliTriggerAnalysis::kV0AND))
 808     eventContainer[1] = 1.;
 809
 810   //
 811   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepRecNoCut);
 812
 813   //
 814   if(fIdentifiedAsPileUp) return;
 815   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepRecNoPileUp);
 816
 817   //
 818   if(TMath::Abs(fCentralityF) < 0) return;
 819   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepRecCentralityOk);
 820   //printf("In ProcessESD %f\n",fCentralityF);
 821
 822   //
 823   if(fIdentifiedAsOutInz) return;
 824   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepZRange);
 825
 826   //
 827   if(!fPassTheEventCut) return;
 828   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepReconstructed);
 829
 830
 831   fContainer->NewEvent();
 832
 833   if (GetPlugin(kIsElecBackGround)) {
 834     fElecBackGround->SetEvent(fESD);
 835   }
 836   if (GetPlugin(kSecVtx)) {
 837     fSecVtx->SetEvent(fESD);
 838     fSecVtx->GetPrimaryCondition();
 839   }
 840
 841   if(HasMCData()){
 842     if (GetPlugin(kSecVtx)) {
 843       fSecVtx->SetMCEvent(fMCEvent);
 844       fSecVtx->SetMCQA(fMCQA);
 845     }
 846     if (GetPlugin(kIsElecBackGround)) {
 847       fElecBackGround->SetMCEvent(fMCEvent);
 848     }
 849   }
 850
 851   Double_t container[10];
 852   memset(container, 0, sizeof(Double_t) * 10);
 853   // container for the output THnSparse
 854   Double_t dataE[6]; // [pT, eta, Phi, type, 'C' or 'B']
 855   Double_t dataDca[6]; // [source, pT, dca, centrality]
 856   Int_t nElectronCandidates = 0;
 857   AliESDtrack *track = NULL, *htrack = NULL;
 858   AliMCParticle *mctrack = NULL;
 859   AliMCParticle *mctrackmother = NULL;
 860   Int_t pid = 0;
 861
 862   Bool_t signal = kTRUE;
 863
 864   fCFM->SetRecEventInfo(fESD);
 865
 866   // minjung for IP QA(temporary ~ 2weeks)
 867   if(!fExtraCuts){
 868     fExtraCuts = new AliHFEextraCuts("hfetmpCuts","HFE tmp Cuts");
 869   }
 870   fExtraCuts->SetRecEventInfo(fESD);
 871
 872   // Electron background analysis
 873   if (GetPlugin(kIsElecBackGround)) {
 874
 875     AliDebug(2, "Running BackGround Analysis");
 876
 877     fElecBackGround->Reset();
 878
 879   } // end of electron background analysis
 880   //
 881   // Loop ESD
 882   //
 883   AliDebug(3, Form("Number of Tracks: %d", fESD->GetNumberOfTracks()));
 884   for(Int_t itrack = 0; itrack < fESD->GetNumberOfTracks(); itrack++){
 885     AliDebug(4, "New ESD track");
 886     track = fESD->GetTrack(itrack);
 887     track->SetESDEvent(fESD);
 888
 889     // fill counts of v0-identified particles
 890     Int_t v0pid = -1;
 891     if(track->TestBit(BIT(14))) v0pid = AliPID::kElectron;
 892     else if(track->TestBit(BIT(15))) v0pid = AliPID::kPion;
 893     else if(track->TestBit(BIT(16))) v0pid = AliPID::kProton;
 894     // here the tagged track analysis will run
 895     if(fTaggedTrackAnalysis && v0pid > -1){
 896       AliDebug(1, Form("Track identified as %s", AliPID::ParticleName(v0pid)));
 897       fTaggedTrackAnalysis->ProcessTrack(track, v0pid);
 898       AliDebug(1, "V0 PID done");
 899     }
 900
 901
 902     //Fill non-HFE source containers at reconstructed events cut step
 903     AliDebug(3, Form("Doing track %d, %p", itrack, track));
 904
 905
 906     //////////////////////////////////////
 907     // preselect
 908     /////////////////////////////////////
 909     if(fPIDpreselect && fCutspreselect) {
 910       if(!PreSelectTrack(track)) continue;
 911     }
 912
 913     signal = kTRUE;
 914
 915     // Fill step without any cut
 916
 917     if(HasMCData()){
 918       // Check if it is electrons near the vertex
 919       if(!(mctrack = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(TMath::Abs(track->GetLabel()))))) continue;
 920
 921       if(fFillSignalOnly && !fCFM->CheckParticleCuts(AliHFEcuts::kStepMCGenerated, mctrack)) signal = kFALSE;
 922       else AliDebug(3, "Signal Electron");
 923
 924       // Fill K pt for Ke3 contributions
 925       if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode())==321)) fQACollection->Fill("Kptspectra",mctrack->Pt());
 926       else if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode())==130)) fQACollection->Fill("K0Lptspectra",mctrack->Pt());
 927     }
 928     // Cache new Track information inside the var manager
 929     fVarManager->NewTrack(track, mctrack, fCentralityF, -1, signal);
 930
 931     if(fFillNoCuts) {
 932       if(signal || !fFillSignalOnly){
 933         fVarManager->FillContainer(fContainer, "recTrackContReco", AliHFEcuts::kStepRecNoCut, kFALSE);
 934         fVarManager->FillContainer(fContainer, "recTrackContMC", AliHFEcuts::kStepRecNoCut, kTRUE);
 935       }
 936     }
 937
 938     if(fisNonHFEsystematics && IsPbPb())  {
 939       //FillProductionVertex(track);
 940       if(fMCQA && signal){
 941         fMCQA->SetCentrality(fCentralityF);
 942         if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) == 11)){
 943           Double_t weightElecBgV0[kBgLevels] = {0.,0.,0.};
 944
 945           fMCQA->SetTrkKine(track->Pt(),track->Eta(), track->Phi());
 946           fMCQA->SetContainerStep(4);
 947
 948           weightElecBgV0[0] = fMCQA->GetWeightFactor(mctrack, 0); // positive:conversion e, negative: nonHFE
 949
 950           //Fill additional containers for electron source distinction
 951           Int_t elecSource = 0;
 952           elecSource = fMCQA->GetElecSource(mctrack->Particle());
 953           const Char_t *sourceName[kElecBgSpecies]={"Pion","Eta","Omega","Phi","EtaPrime","Rho"};
 954           const Char_t *levelName[kBgLevels]={"Best","Lower","Upper"};
 955           Int_t iName = 0;
 956           for(Int_t iSource = AliHFEmcQA::kPi0; iSource <=  AliHFEmcQA::kGammaRho0; iSource++){
 957             if((iSource == AliHFEmcQA::kElse)||(iSource == AliHFEmcQA::kMisID)) continue;
 958             if(elecSource == iSource){
 959
 960               if(weightElecBgV0[0]>0){
 961                 fVarManager->FillContainer(fContainer, Form("conversionElecs%s%s",sourceName[iName], levelName[0]), 4, kTRUE, weightElecBgV0[0]);
 962               }
 963               else if(weightElecBgV0[0]<0){
 964                 fVarManager->FillContainer(fContainer, Form("mesonElecs%s%s",sourceName[iName], levelName[0]), 4, kTRUE, -1*weightElecBgV0[0]);
 965               }
 966               break;
 967             }
 968             iName++;
 969             if(iName == kElecBgSpecies)iName = 0;
 970           }
 971         }
 972       }
 973     }
 974
 975     // RecKine: ITSTPC cuts
 976     if(!ProcessCutStep(AliHFEcuts::kStepRecKineITSTPC, track)) continue;
 977
 978
 979     // RecPrim
 980     if(fRejectKinkMother) {
 981       if(track->GetKinkIndex(0) != 0) continue; } // Quick and dirty fix to reject both kink mothers and daughters
 982     if(!ProcessCutStep(AliHFEcuts::kStepRecPrim, track)) continue;
 983
 984     // HFEcuts: ITS layers cuts
 985     if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsITS, track)) continue;
 986
 987     // HFE cuts: TOF PID and mismatch flag
 988     if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTOF, track)) continue;
 989
 990     // HFE cuts: TPC PID cleanup
 991     if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTPC, track)) continue;
 992
 993     // HFEcuts: Nb of tracklets TRD0
 994     if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTRD, track)) continue;
 995
 996     // Fill correlation maps before PID
 997     if(signal && fContainer->GetCorrelationMatrix("correlationstepbeforePID")) {
 998       //printf("Fill correlation maps before PID\n");
 999       fVarManager->FillCorrelationMatrix(fContainer->GetCorrelationMatrix("correlationstepbeforePID"));
1000     }
1001
1002     if(HasMCData()){
1003       FillProductionVertex(track);
1004
1005       if(fMCQA && signal){
1006         fMCQA->SetCentrality(fCentralityF);
1007         if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) == 11)){
1008          Double_t weightElecBgV0[kBgLevels] = {0.,0.,0.};
1009          Double_t hfeimpactRtmp=0., hfeimpactnsigmaRtmp=0.;
1010          fExtraCuts->GetHFEImpactParameters(track, hfeimpactRtmp, hfeimpactnsigmaRtmp);
1011          UChar_t itsPixel = track->GetITSClusterMap();
1012          Double_t ilyrhit=0, ilyrstat=0;
1013          for(Int_t ilyr=0; ilyr<6; ilyr++){
1014            if(TESTBIT(itsPixel, ilyr)) ilyrhit += TMath::Power(2,ilyr);
1015            if(fExtraCuts->CheckITSstatus(fExtraCuts->GetITSstatus(track,ilyr))) ilyrstat += TMath::Power(2,ilyr);
1016          }
1017          fMCQA->SetITSInfo(ilyrhit,ilyrstat);
1018          fMCQA->SetHFEImpactParameters(hfeimpactRtmp, hfeimpactnsigmaRtmp);
1019          fMCQA->SetTrkKine(track->Pt(),track->Eta(), track->Phi());
1020          fMCQA->SetContainerStep(3);
1021          for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1022            weightElecBgV0[iLevel] = fMCQA->GetWeightFactor(mctrack, iLevel); // positive:conversion e, negative: nonHFE
1023            if(!fisNonHFEsystematics || IsPbPb())break;
1024          }
1025
1026          if(fisNonHFEsystematics){
1027            //Fill additional containers for electron source distinction
1028            Int_t elecSource = 0;
1029            elecSource = fMCQA->GetElecSource(mctrack->Particle());
1030            const Char_t *sourceName[kElecBgSpecies]={"Pion","Eta","Omega","Phi","EtaPrime","Rho"};
1031            const Char_t *levelName[kBgLevels]={"Best","Lower","Upper"};
1032            Int_t iName = 0;
1033            for(Int_t iSource = AliHFEmcQA::kPi0; iSource <=  AliHFEmcQA::kGammaRho0; iSource++){
1034              if((iSource == AliHFEmcQA::kElse)||(iSource == AliHFEmcQA::kMisID)) continue;
1035              if(elecSource == iSource){
1036                for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1037                  if(weightElecBgV0[iLevel]>0){
1038                    fVarManager->FillContainer(fContainer, Form("conversionElecs%s%s",sourceName[iName], levelName[iLevel]), 3, kFALSE, weightElecBgV0[iLevel]);
1039                  }
1040                  else if(weightElecBgV0[iLevel]<0){
1041                    fVarManager->FillContainer(fContainer, Form("mesonElecs%s%s",sourceName[iName], levelName[iLevel]), 3, kFALSE, -1*weightElecBgV0[iLevel]);
1042                  }
1043                  if(IsPbPb())break;
1044                }
1045                break;
1046              }
1047              iName++;
1048              if(iName == kElecBgSpecies)iName = 0;
1049            }
1050          }
1051          //else{
1052            if(weightElecBgV0[0]>0) {
1053              fVarManager->FillContainer(fContainer, "conversionElecs", 3, kFALSE, weightElecBgV0[0]);
1054              fVarManager->FillContainer(fContainer, "conversionElecs", 4, kTRUE, weightElecBgV0[0]);
1055            }
1056            else if(weightElecBgV0[0]<0) {
1057              fVarManager->FillContainer(fContainer, "mesonElecs", 3, kFALSE, -1*weightElecBgV0[0]);
1058              fVarManager->FillContainer(fContainer, "mesonElecs", 4, kTRUE, -1*weightElecBgV0[0]);
1059            }
1060            //}
1061         }
1062       }
1063
1064       Double_t hfeimpactR4all=0., hfeimpactnsigmaR4all=0.;
1065       Int_t sourceDca =-1;
1066       if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) == 211)){
1067         if(track->Pt()>4.){
1068           fExtraCuts->GetHFEImpactParameters(track, hfeimpactR4all, hfeimpactnsigmaR4all);
1069           dataDca[0]=0; //pion
1070           dataDca[1]=track->Pt();
1071           dataDca[2]=hfeimpactR4all;
1072           dataDca[3]=fCentralityF;
1073           dataDca[4] = v0pid;
1074           dataDca[5] = double(track->Charge());
1075           fQACollection->Fill("Dca", dataDca);
1076         }
1077       }
1078       else if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) == 11)){ // to increas statistics for Martin
1079         if(signal){
1080           fExtraCuts->GetHFEImpactParameters(track, hfeimpactR4all, hfeimpactnsigmaR4all);
1081           if(fSignalCuts->IsCharmElectron(track)){
1082             sourceDca=1;
1083           }
1084           else if(fSignalCuts->IsBeautyElectron(track)){
1085             sourceDca=2;
1086           }
1087           else if(fSignalCuts->IsGammaElectron(track)){
1088             sourceDca=3;
1089           }
1090           else if(fSignalCuts->IsNonHFElectron(track)){
1091             sourceDca=4;
1092           }
1093           else if(fSignalCuts->IsJpsiElectron(track)){
1094             sourceDca=5;
1095           }
1096           else {
1097             sourceDca=6;
1098           }
1099           dataDca[0]=sourceDca;
1100           dataDca[1]=track->Pt();
1101           dataDca[2]=hfeimpactR4all;
1102           dataDca[3]=fCentralityF;
1103           dataDca[4] = v0pid;
1104           dataDca[5] = double(track->Charge());
1105           if(signal) fQACollection->Fill("Dca", dataDca);
1106         }
1107       }
1108     }
1109
1110     if(TMath::Abs(track->Eta()) < 0.5){
1111       if(track->GetInnerParam())
1112         fQACollection->Fill("TPCdEdxBeforePID", track->GetInnerParam()->P(), track->GetTPCsignal());
1113       fQACollection->Fill("TPCnSigmaBeforePID", track->P(), fInputHandler->GetPIDResponse()->NumberOfSigmasTPC(track, AliPID::kElectron));
1114     }
1115
1116     AliHFEpidObject hfetrack;
1117     hfetrack.SetAnalysisType(AliHFEpidObject::kESDanalysis);
1118     hfetrack.SetRecTrack(track);
1119     if(HasMCData()) hfetrack.SetMCTrack(mctrack);
1120     hfetrack.SetCentrality(fCentralityF);
1121     if(IsPbPb()) hfetrack.SetPbPb();
1122     else hfetrack.SetPP();
1123     fPID->SetVarManager(fVarManager);
1124     if(!fPID->IsSelected(&hfetrack, fContainer, "recTrackCont", fPIDqa)) continue;
1125     nElectronCandidates++;
1126
1127     // Temporary histogram for chi2/ITS cluster
1128     if(IsPbPb()) {
1129             TBits shared = track->GetTPCSharedMap();
1130             Int_t sharebit=0;
1131             if(shared.CountBits() >= 2) sharebit=1;
1132
1133             Double_t itschi2percluster = 0.0;
1134             Double_t itsnbcls = static_cast<Double_t>(track->GetNcls(0));
1135             if(itsnbcls > 0) itschi2percluster = track->GetITSchi2()/itsnbcls;
1136
1137             Double_t itsChi2[7] = {track->Pt(),track->Eta(), track->Phi(),
1138                                    fCentralityF,track->GetTPCsignalN(), sharebit,itschi2percluster};
1139             fQACollection->Fill("fChi2perITScluster", itsChi2);
1140     }
1141     else{
1142
1143       Double_t itschi2percluster = 0.0;
1144       Double_t itsnbcls = static_cast<Double_t>(track->GetNcls(0));
1145       if(itsnbcls > 0) itschi2percluster = track->GetITSchi2()/itsnbcls;
1146
1147       Double_t itsChi2[3] = {track->Pt(), fCentralityF, itschi2percluster};
1148       fQACollection->Fill("fChi2perITScluster", itsChi2);
1149     }
1150
1151     // Fill Histogram for Hadronic Background
1152     if(HasMCData()){
1153       if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) != 11))
1154         fVarManager->FillContainer(fContainer, "hadronicBackground", UInt_t(0), kFALSE);
1155       else if(mctrack){
1156         // Fill Ke3 contributions
1157         Int_t glabel=TMath::Abs(mctrack->GetMother());
1158         if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
1159           if(TMath::Abs(mctrackmother->Particle()->GetPdgCode())==321)
1160             fQACollection->Fill("Ke3Kecorr",mctrack->Pt(),mctrackmother->Pt());
1161           else if(TMath::Abs(mctrackmother->Particle()->GetPdgCode())==130)
1162             fQACollection->Fill("Ke3K0Lecorr",mctrack->Pt(),mctrackmother->Pt());
1163         }
1164       }
1165     }
1166
1167     // Fill Containers
1168     if(signal) {
1169       // Apply weight for background contamination
1170             if(fBackGroundFactorApply) {
1171               if(IsPbPb() && fCentralityF >= 0) fWeightBackGround =  fkBackGroundFactorArray[fCentralityF >= 0 ? fCentralityF : 0]->Eval(TMath::Abs(track->P()));
1172               else    fWeightBackGround =  fkBackGroundFactorArray[0]->Eval(TMath::Abs(track->P())); // pp case
1173
1174               if(fWeightBackGround < 0.0) fWeightBackGround = 0.0;
1175               else if(fWeightBackGround > 1.0) fWeightBackGround = 1.0;
1176         // weightBackGround as special weight
1177         fVarManager->FillContainer(fContainer, "hadronicBackground", 1, kFALSE, fWeightBackGround);
1178       }
1179       fVarManager->FillCorrelationMatrix(fContainer->GetCorrelationMatrix("correlationstepafterPID"));
1180     }
1181
1182     Bool_t bTagged=kFALSE;
1183     if(GetPlugin(kSecVtx)) {
1184       AliDebug(2, "Running Secondary Vertex Analysis");
1185       if(fSecVtx->Process(track) && signal) {
1186         fVarManager->FillContainer(fContainer, "recTrackContSecvtxReco", AliHFEcuts::kStepHFEcutsSecvtx, kFALSE);
1187         fVarManager->FillContainer(fContainer, "recTrackContSecvtxMC", AliHFEcuts::kStepHFEcutsSecvtx, kTRUE);
1188         bTagged=kTRUE;
1189       }
1190     }
1191
1192     if(HasMCData()){
1193       dataE[0] = track->Pt();
1194       dataE[1] = track->Eta();
1195       dataE[2] = track->Phi();
1196       dataE[3] = track->Charge();
1197       dataE[4] = -1.;
1198       dataE[5] = -1.;
1199
1200       // Track selected: distinguish between true and fake
1201       AliDebug(1, Form("Candidate Selected, filling THnSparse, PID: %d\n", mctrack->Particle()->GetPdgCode()));
1202       if((pid = TMath::Abs(mctrack->Particle()->GetPdgCode())) == 11){
1203         Int_t type = 0;
1204         if(fSignalCuts->IsCharmElectron(track))
1205           type = 1;
1206         else if(fSignalCuts->IsBeautyElectron(track))
1207           type = 2;
1208         AliDebug(1, Form("Type: %d\n", type));
1209         if(type){
1210                 dataE[5] = type; // beauty[1] or charm[2]
1211                 dataE[4] = 2;  // signal electron
1212         }
1213         else{
1214                 dataE[4] = 1; // not a signal electron
1215                 dataE[5] = 0;
1216         }
1217       }
1218       else {
1219         // Fill THnSparse with the information for Fake Electrons
1220         dataE[4] = 0;
1221         dataE[5] = 0;
1222       }
1223       // fill the performance THnSparse, if the mc origin could be defined
1224       if(dataE[4] > -1){
1225         AliDebug(1, Form("Entries: [%.3f|%.3f|%.3f|%f|%f|%f]\n", dataE[0],dataE[1],dataE[2],dataE[3],dataE[4],dataE[5]));
1226         fQACollection->Fill("PIDperformance", dataE);
1227       }
1228     }
1229
1230     // Electron background analysis
1231     if (GetPlugin(kIsElecBackGround)) {
1232
1233       AliDebug(2, "Running BackGround Analysis");
1234
1235       for(Int_t jtrack = 0; jtrack < fESD->GetNumberOfTracks(); jtrack++){
1236         htrack = fESD->GetTrack(jtrack);
1237         if ( itrack == jtrack ) continue;
1238         fElecBackGround->PairAnalysis(track, htrack);
1239       }
1240     } // end of electron background analysis
1241
1242     if (GetPlugin(kDEstep)) {
1243       Double_t weightElecBgV0[kBgLevels] = {0.,0.,0.,};
1244       Int_t elecSource = 0;
1245       Double_t hfeimpactR=0., hfeimpactnsigmaR=0.;
1246       fExtraCuts->GetHFEImpactParameters(track, hfeimpactR, hfeimpactnsigmaR);
1247       if(HasMCData())
1248       {
1249         if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) != 11)){
1250             fQACollection->Fill("hadronsBeforeIPcut",track->Pt());
1251         }
1252         if(fMCQA && signal) {
1253
1254           fMCQA->SetContainerStep(0);
1255           for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1256             weightElecBgV0[iLevel] = fMCQA->GetWeightFactor(mctrack, iLevel); // positive:conversion e, negative: nonHFE
1257             if(!fisNonHFEsystematics || IsPbPb())break;
1258           }
1259
1260           if(fisNonHFEsystematics){
1261             //Fill additional containers for electron source distinction
1262             elecSource = fMCQA->GetElecSource(mctrack->Particle());
1263             const Char_t *sourceName[kElecBgSpecies]={"Pion","Eta","Omega","Phi","EtaPrime","Rho"};
1264             const Char_t *levelName[kBgLevels]={"Best","Lower","Upper"};
1265             Int_t iName = 0;
1266             for(Int_t iSource = AliHFEmcQA::kPi0; iSource <=  AliHFEmcQA::kGammaRho0; iSource++){
1267               if((iSource == AliHFEmcQA::kElse)||(iSource == AliHFEmcQA::kMisID)) continue;
1268               if(elecSource == iSource){
1269                 for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1270                   if(weightElecBgV0[iLevel]>0) fVarManager->FillContainer(fContainer, Form("conversionElecs%s%s",sourceName[iName], levelName[iLevel]), 0, kFALSE, weightElecBgV0[iLevel]);
1271                   else if(weightElecBgV0[iLevel]<0) fVarManager->FillContainer(fContainer, Form("mesonElecs%s%s",sourceName[iName], levelName[iLevel]), 0, kFALSE, -1*weightElecBgV0[iLevel]);
1272                   if(IsPbPb())break;
1273                 }
1274                 break;
1275               }
1276               iName++;
1277               if(iName == kElecBgSpecies)iName = 0;
1278             }
1279           }
1280           //else{
1281           if(weightElecBgV0[0]>0) {
1282             fVarManager->FillContainer(fContainer, "conversionElecs", 0, kFALSE, weightElecBgV0[0]);
1283             fVarManager->FillContainer(fContainer, "conversionElecs", 5, kTRUE, weightElecBgV0[0]);
1284           }
1285           else if(weightElecBgV0[0]<0) {
1286             fVarManager->FillContainer(fContainer, "mesonElecs", 0, kFALSE, -1*weightElecBgV0[0]);
1287             fVarManager->FillContainer(fContainer, "mesonElecs", 5, kTRUE, -1*weightElecBgV0[0]);
1288           }
1289           //}
1290           if(bTagged){ // bg estimation for the secondary vertex tagged signals
1291             if(weightElecBgV0[0]>0) fVarManager->FillContainer(fContainer, "conversionElecs", 2, kFALSE, weightElecBgV0[0]);
1292             else if(weightElecBgV0[0]<0) fVarManager->FillContainer(fContainer, "mesonElecs", 2, kFALSE, -1*weightElecBgV0[0]);
1293           }
1294         }
1295       } // end of MC
1296
1297       dataDca[0]=-1; //for data, don't know the origin
1298       dataDca[1]=track->Pt();
1299       dataDca[2]=hfeimpactR;
1300       dataDca[3]=fCentralityF;
1301       dataDca[4] = v0pid;
1302       dataDca[5] = double(track->Charge());
1303       if (!HasMCData()) fQACollection->Fill("Dca", dataDca);
1304
1305       // Fill Containers for impact parameter analysis
1306       if(!fCFM->CheckParticleCuts(AliHFEcuts::kStepHFEcutsDca + AliHFEcuts::kNcutStepsMCTrack + AliHFEcuts::kNcutStepsRecTrack,track)) continue;
1307       if(HasMCData()){
1308         if(fMCQA && signal) {
1309           fMCQA->SetContainerStep(1);
1310           for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1311             weightElecBgV0[iLevel] = fMCQA->GetWeightFactor(mctrack, iLevel); // positive:conversion e, negative: nonHFE
1312             if(!fisNonHFEsystematics || IsPbPb())break;
1313           }
1314           if(fisNonHFEsystematics){
1315             //Fill additional containers for electron source distinction
1316             elecSource = fMCQA->GetElecSource(mctrack->Particle());
1317             const Char_t *sourceName[kElecBgSpecies]={"Pion","Eta","Omega","Phi","EtaPrime","Rho"};
1318             const Char_t *levelName[kBgLevels]={"Best","Lower","Upper"};
1319             Int_t iName = 0;
1320             for(Int_t iSource = AliHFEmcQA::kPi0; iSource <=  AliHFEmcQA::kGammaRho0; iSource++){
1321               if((iSource == AliHFEmcQA::kElse)||(iSource == AliHFEmcQA::kMisID)) continue;
1322               if(elecSource == iSource){
1323                 for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1324                   if(weightElecBgV0[iLevel]>0) fVarManager->FillContainer(fContainer, Form("conversionElecs%s%s",sourceName[iName], levelName[iLevel]), 1, kFALSE, weightElecBgV0[iLevel]);
1325                   else if(weightElecBgV0[iLevel]<0) fVarManager->FillContainer(fContainer, Form("mesonElecs%s%s",sourceName[iName], levelName[iLevel]), 1, kFALSE, -1*weightElecBgV0[iLevel]);
1326                   if(IsPbPb())break;
1327                 }
1328                 break;
1329               }
1330               iName++;
1331               if(iName == kElecBgSpecies)iName = 0;
1332             }
1333           }
1334           // else{
1335             if(weightElecBgV0[0]>0) {
1336               fVarManager->FillContainer(fContainer, "conversionElecs", 1, kFALSE, weightElecBgV0[0]);
1337               fVarManager->FillContainer(fContainer, "conversionElecs", 6, kTRUE, weightElecBgV0[0]);
1338             }
1339             else if(weightElecBgV0[0]<0) {
1340               fVarManager->FillContainer(fContainer, "mesonElecs", 1, kFALSE, -1*weightElecBgV0[0]);
1341               fVarManager->FillContainer(fContainer, "mesonElecs", 6, kTRUE, -1*weightElecBgV0[0]);
1342             }
1343             //}
1344         }
1345       }
1346       if(signal) {
1347         fVarManager->FillContainer(fContainer, "recTrackContDEReco", AliHFEcuts::kStepHFEcutsDca, kFALSE);
1348         fVarManager->FillContainer(fContainer, "recTrackContDEMC", AliHFEcuts::kStepHFEcutsDca, kTRUE);
1349         fVarManager->FillCorrelationMatrix(fContainer->GetCorrelationMatrix("correlationstepafterDE"));
1350       }
1351       if(HasMCData()){
1352         if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) != 11)){
1353           fQACollection->Fill("hadronsAfterIPcut",track->Pt());
1354         }
1355       }
1356     }
1357
1358   }
1359   fQACollection->Fill("nElectronTracksEvent", nElectronCandidates);
1360 }
1361
1362 //____________________________________________________________
1363 void AliAnalysisTaskHFE::ProcessAOD(){
1364   //
1365   // Run Analysis in AOD Mode
1366   // Function is still in development
1367   //
1368   //printf("Process AOD\n");
1369   AliDebug(3, "Processing AOD Event");
1370   Double_t eventContainer[4];
1371   eventContainer[0] = 0.0;
1372   if(HasMCData()) eventContainer[0] = fVz;
1373   else {
1374     if(fInputEvent->GetPrimaryVertex()) eventContainer[0] = fInputEvent->GetPrimaryVertex()->GetZ();
1375   }
1376   eventContainer[1] = 1.; // No Information available in AOD analysis, assume all events have V0AND
1377   eventContainer[2] = fCentralityF;
1378   eventContainer[3] = fContributors;
1379
1380   //printf("value event container %f, %f, %f, %f\n",eventContainer[0],eventContainer[1],eventContainer[2],eventContainer[3]);
1381
1382   AliAODEvent *fAOD = dynamic_cast<AliAODEvent *>(fInputEvent);
1383   if(!fAOD){
1384     AliError("AOD Event required for AOD Analysis");
1385       return;
1386   }
1387
1388   //printf("Will fill\n");
1389   //
1390   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepRecNoCut);
1391   //printf("Fill\n");
1392   //
1393   if(fIdentifiedAsPileUp) return;
1394   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepRecNoPileUp);
1395
1396   //
1397   if(fIdentifiedAsOutInz) return;
1398   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepZRange);
1399
1400   //
1401   if(!fPassTheEventCut) return;
1402   fCFM->GetEventContainer()->Fill(eventContainer, AliHFEcuts::kEventStepReconstructed);
1403   //printf("pass\n");
1404
1405   fContainer->NewEvent();
1406
1407   fCFM->SetRecEventInfo(fAOD);
1408
1409   // Look for kink mother
1410   Int_t numberofvertices = fAOD->GetNumberOfVertices();
1411   Double_t listofmotherkink[numberofvertices];
1412   Int_t numberofmotherkink = 0;
1413   for(Int_t ivertex=0; ivertex < numberofvertices; ivertex++) {
1414     AliAODVertex *aodvertex = fAOD->GetVertex(ivertex);
1415     if(!aodvertex) continue;
1416     if(aodvertex->GetType()==AliAODVertex::kKink) {
1417       AliAODTrack *mother = (AliAODTrack *) aodvertex->GetParent();
1418       if(!mother) continue;
1419       Int_t idmother = mother->GetID();
1420       listofmotherkink[numberofmotherkink] = idmother;
1421       //printf("ID %d\n",idmother);
1422       numberofmotherkink++;
1423     }
1424   }
1425   //printf("Number of kink mother in the events %d\n",numberofmotherkink);
1426
1427
1428     // Loop over tracks
1429   AliAODTrack *track = NULL;
1430   AliAODMCParticle *mctrack = NULL;
1431   Double_t dataE[6]; // [pT, eta, Phi, Charge, type, 'C' or 'B']
1432   Int_t nElectronCandidates = 0;
1433   Int_t pid;
1434   Bool_t signal;
1435   //printf("Number of track %d\n",(Int_t) fAOD->GetNumberOfTracks());
1436   for(Int_t itrack = 0; itrack < fAOD->GetNumberOfTracks(); itrack++){
1437     track = fAOD->GetTrack(itrack); mctrack = NULL;
1438     if(!track) continue;
1439     if(fUseFlagAOD){
1440       if(track->GetFlags() != fFlags) continue;  // Only process AOD tracks where the HFE is set
1441     }
1442     //printf("Pass the flag\n");
1443
1444     signal = kTRUE;
1445     if(HasMCData()){
1446
1447       Int_t label = TMath::Abs(track->GetLabel());
1448       if(label)
1449         mctrack = dynamic_cast<AliAODMCParticle *>(fMCEvent->GetTrack(label));
1450         if(fFillSignalOnly && !fCFM->CheckParticleCuts(AliHFEcuts::kStepMCGenerated, mctrack)) signal = kFALSE;
1451     }
1452     fVarManager->NewTrack(track, mctrack, fCentralityF, -1, kTRUE);
1453
1454     if(fFillNoCuts) {
1455       if(signal || !fFillSignalOnly){
1456         fVarManager->FillContainer(fContainer, "recTrackContReco", AliHFEcuts::kStepRecNoCut, kFALSE);
1457         fVarManager->FillContainer(fContainer, "recTrackContMC", AliHFEcuts::kStepRecNoCut, kTRUE);
1458       }
1459     }
1460
1461     if(fApplyCutAOD) {
1462       // RecKine: ITSTPC cuts
1463       if(!ProcessCutStep(AliHFEcuts::kStepRecKineITSTPC, track)) continue;
1464
1465       // Reject kink mother
1466       Bool_t kinkmotherpass = kTRUE;
1467       for(Int_t kinkmother = 0; kinkmother < numberofmotherkink; kinkmother++) {
1468         if(track->GetID() == listofmotherkink[kinkmother]) {
1469           kinkmotherpass = kFALSE;
1470           continue;
1471         }
1472       }
1473       if(!kinkmotherpass) continue;
1474
1475       // RecPrim
1476       if(!ProcessCutStep(AliHFEcuts::kStepRecPrim, track)) continue;
1477
1478       // HFEcuts: ITS layers cuts
1479       if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsITS, track)) continue;
1480
1481       // HFE cuts: TOF PID and mismatch flag
1482       if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTOF, track)) continue;
1483
1484       // HFE cuts: TPC PID cleanup
1485       if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTPC, track)) continue;
1486
1487       // HFEcuts: Nb of tracklets TRD0
1488       if(!ProcessCutStep(AliHFEcuts::kStepHFEcutsTRD, track)) continue;
1489     }
1490
1491     // Fill correlation maps before PID
1492     if(signal && fContainer->GetCorrelationMatrix("correlationstepbeforePID")) {
1493       //printf("Fill correlation maps before PID\n");
1494       fVarManager->FillCorrelationMatrix(fContainer->GetCorrelationMatrix("correlationstepbeforePID"));
1495     }
1496
1497     //printf("Will process to PID\n");
1498
1499     // track accepted, do PID
1500     AliHFEpidObject hfetrack;
1501     hfetrack.SetAnalysisType(AliHFEpidObject::kAODanalysis);
1502     hfetrack.SetRecTrack(track);
1503     if(HasMCData()) hfetrack.SetMCTrack(mctrack);
1504     hfetrack.SetCentrality(fCentralityF);
1505     if(IsPbPb()) hfetrack.SetPbPb();
1506     else hfetrack.SetPP();
1507     fPID->SetVarManager(fVarManager);
1508     if(!fPID->IsSelected(&hfetrack, fContainer, "recTrackCont", fPIDqa)) continue;    // we will do PID here as soon as possible
1509
1510
1511     // Apply weight for background contamination
1512     //Double_t weightBackGround = 1.0;
1513     if(signal) {
1514       // Apply weight for background contamination
1515       if(fBackGroundFactorApply) {
1516         if(IsPbPb() && fCentralityF >= 0) fWeightBackGround =  fkBackGroundFactorArray[fCentralityF >= 0 ? fCentralityF : 0]->Eval(TMath::Abs(track->P()));
1517         else    fWeightBackGround =  fkBackGroundFactorArray[0]->Eval(TMath::Abs(track->P())); // pp case
1518
1519         if(fWeightBackGround < 0.0) fWeightBackGround = 0.0;
1520         else if(fWeightBackGround > 1.0) fWeightBackGround = 1.0;
1521         // weightBackGround as special weight
1522         fVarManager->FillContainer(fContainer, "hadronicBackground", 1, kFALSE, fWeightBackGround);
1523       }
1524       fVarManager->FillCorrelationMatrix(fContainer->GetCorrelationMatrix("correlationstepafterPID"));
1525     }
1526
1527     nElectronCandidates++;
1528     if(HasMCData()){
1529       dataE[0] = track->Pt();
1530       dataE[1] = track->Eta();
1531       dataE[2] = track->Phi();
1532       dataE[3] = track->Charge();
1533       dataE[4] = -1;
1534       dataE[5] = -1;
1535       // Track selected: distinguish between true and fake
1536       AliDebug(1, Form("Candidate Selected, filling THnSparse, PID: %d\n", mctrack ? mctrack->GetPdgCode(): -1));
1537       if(mctrack && ((pid = TMath::Abs(mctrack->GetPdgCode())) == 11)){
1538
1539         Int_t type = 0;
1540         if(fSignalCuts->IsCharmElectron(track))
1541           type = 1;
1542         else if(fSignalCuts->IsBeautyElectron(track))
1543           type = 2;
1544         AliDebug(1, Form("Type: %d\n", type));
1545         if(type){
1546                 dataE[5] = type; // beauty[1] or charm[2]
1547                 dataE[4] = 2;  // signal electron
1548         }
1549         else{
1550                 dataE[4] = 1; // not a signal electron
1551                 dataE[5] = 0;
1552         }
1553       }
1554       else {
1555         // Fill THnSparse with the information for Fake Electrons
1556         dataE[4] = 0;
1557         dataE[5] = 0;
1558       }
1559       // fill the performance THnSparse, if the mc origin could be defined
1560       if(dataE[4] > -1){
1561         AliDebug(1, Form("Entries: [%.3f|%.3f|%.3f|%f|%f|%f]\n", dataE[0],dataE[1],dataE[2],dataE[3],dataE[4],dataE[5]));
1562         fQACollection->Fill("PIDperformance", dataE);
1563       }
1564     }
1565   }
1566   fQACollection->Fill("nElectronTracksEvent", nElectronCandidates);
1567 }
1568
1569 //____________________________________________________________
1570 Bool_t AliAnalysisTaskHFE::ProcessMCtrack(AliVParticle *track){
1571   //
1572   // Filter the Monte Carlo Track
1573   // Additionally Fill a THnSparse for Signal To Background Studies
1574   // Works for AOD and MC analysis Type
1575   //
1576   fVarManager->NewTrack(track, NULL, fCentralityF, -1, kTRUE);
1577   Double_t signalContainer[6];
1578
1579   signalContainer[0] = track->Pt();
1580   signalContainer[1] = track->Eta();
1581   signalContainer[2] = track->Phi();
1582   signalContainer[3] = track->Charge()/3;
1583
1584   Double_t vertex[3] = {0.,0.,0.}; // Production vertex cut to mask gammas which are NOT supposed to have hits in the first ITS layer(s)
1585   if(IsESDanalysis()){
1586     AliMCParticle *mctrack = dynamic_cast<AliMCParticle *>(track);
1587     if(mctrack){
1588       vertex[0] = mctrack->Particle()->Vx();
1589       vertex[1] = mctrack->Particle()->Vy();
1590     }
1591   } else {
1592     AliAODMCParticle *aodmctrack = dynamic_cast<AliAODMCParticle *>(track);
1593     if(aodmctrack) aodmctrack->XvYvZv(vertex);
1594   }
1595
1596   if(!fCFM->CheckParticleCuts(AliHFEcuts::kStepMCGenerated, track)) return kFALSE;
1597   fVarManager->FillContainer(fContainer, "MCTrackCont", AliHFEcuts::kStepMCGenerated, kFALSE);
1598   signalContainer[4] = 0;
1599   if(fSignalCuts->IsSelected(track)){
1600     //fVarManager->FillContainer(fContainer, "MCTrackCont", AliHFEcuts::kStepMCsignal, kFALSE);
1601     // Filling of the Signal/Background histogram using the
1602     // definition of the codes for charm and beauty as below in
1603     // th crearion of the histogram
1604     if(fSignalCuts->IsCharmElectron(track))
1605       signalContainer[4] = 1;
1606     else
1607       signalContainer[4] = 2;
1608   } else {
1609     signalContainer[4] = 0; // (and other background)
1610   }
1611   signalContainer[5] = 0;
1612   // apply cut on the sqrt of the production vertex
1613   Double_t radVertex = TMath::Sqrt(vertex[0]*vertex[0] + vertex[1] * vertex[1]);
1614   if(radVertex < 3.5){
1615     // Within first ITS layer(2) -> Background we cannot reject by ITS cut, let it pass
1616     signalContainer[5] = 1;
1617   } else if (radVertex < 7.5){
1618     signalContainer[5] = 2;
1619   }
1620   fQACollection->Fill("SignalToBackgroundMC", signalContainer);
1621
1622   // Step GeneratedZOutNoPileUp
1623   if((fIdentifiedAsPileUp) || (TMath::Abs(fVz) > fCuts->GetVertexRange()) || (fCentralityF < 0)) return kFALSE;
1624   fVarManager->FillContainer(fContainer, "MCTrackCont", AliHFEcuts::kStepMCGeneratedZOutNoPileUpCentralityFine, kFALSE);
1625   //printf("In ProcessMCtrack %f\n",fCentralityF);
1626
1627   // Step Generated Event Cut
1628   if(!fPassTheEventCut) return kFALSE;
1629   fVarManager->FillContainer(fContainer, "MCTrackCont", AliHFEcuts::kStepMCGeneratedEventCut, kFALSE);
1630
1631   if(!fCFM->CheckParticleCuts(AliHFEcuts::kStepMCInAcceptance, track)) return kFALSE;
1632   fVarManager->FillContainer(fContainer, "MCTrackCont", AliHFEcuts::kStepMCInAcceptance, kFALSE);
1633   return kTRUE;
1634 }
1635
1636 //____________________________________________________________
1637 Bool_t AliAnalysisTaskHFE::PreSelectTrack(AliESDtrack *track) const {
1638   //
1639   // Preselect tracks
1640   //
1641
1642
1643   Bool_t survived = kTRUE;
1644
1645   if(!fCutspreselect->CheckParticleCuts(AliHFEcuts::kStepRecKineITSTPC, track)) {
1646     survived = kFALSE;
1647     //printf("Did not pass AliHFEcuts::kStepRecKineITSTPC\n");
1648   }
1649   //else printf("Pass AliHFEcuts::kStepRecKineITSTPC\n");
1650   if(!fCutspreselect->CheckParticleCuts(AliHFEcuts::kStepRecPrim, track)) {
1651     survived = kFALSE;
1652     //printf("Did not pass AliHFEcuts::kStepRecPrim\n");
1653   }
1654   //else printf("Pass AliHFEcuts::kStepRecPrim\n");
1655   if(!fCutspreselect->CheckParticleCuts(AliHFEcuts::kStepHFEcutsITS, track)) {
1656     survived = kFALSE;
1657     //printf("Did not pass AliHFEcuts::kStepHFEcutsITS\n");
1658   }
1659   //else printf("Pass AliHFEcuts::kStepHFEcutsITS\n");
1660   if(!fCutspreselect->CheckParticleCuts(AliHFEcuts::kStepHFEcutsTOF, track)) {
1661     survived = kFALSE;
1662     //printf("Did not pass AliHFEcuts::kStepHFEcutsTOF\n");
1663   }
1664   //else printf("Pass AliHFEcuts::kStepHFEcutsTOF\n");
1665   if(!fCutspreselect->CheckParticleCuts(AliHFEcuts::kStepHFEcutsTRD, track)) {
1666     survived = kFALSE;
1667     //printf("Did not pass AliHFEcuts::kStepHFEcutsTRD\n");
1668   }
1669   //else printf("Pass AliHFEcuts::kStepHFEcutsTRD\n");
1670
1671   if(survived){
1672     // Apply PID
1673     AliHFEpidObject hfetrack;
1674     hfetrack.SetAnalysisType(AliHFEpidObject::kESDanalysis);
1675     hfetrack.SetRecTrack(track);
1676     if(!fPIDpreselect->IsSelected(&hfetrack)) {
1677       //printf("Did not pass AliHFEcuts::kPID\n");
1678       survived = kFALSE;
1679     }
1680     //else printf("Pass AliHFEcuts::kPID\n");
1681   }
1682
1683   return survived;
1684
1685 }
1686 //____________________________________________________________
1687 void AliAnalysisTaskHFE::MakeEventContainer(){
1688   //
1689   // Create the event container for the correction framework and link it
1690   // 1st bin: Vertex z-position
1691   // 2nd bin: V0AND decision (normalization to sigma_inel)
1692   // 3rd bin: Centrality class (for pp defined as number of contributors in vertex.)
1693   // 4th bin: Number of contributors > 0
1694   //
1695
1696   const Int_t kNvar = 4;  // number of variables on the grid:
1697   Int_t nBins[kNvar] = {120, 2, 11, 2};
1698   Double_t binMin[kNvar] = {-30. , 0., 0.0, 0.};
1699   Double_t binMax[kNvar] = {30., 2., 11.0, 2.};
1700
1701   AliCFContainer *evCont = new AliCFContainer("eventContainer", "Container for events", AliHFEcuts::kNcutStepsEvent, kNvar, nBins);
1702
1703   Double_t *vertexBins = AliHFEtools::MakeLinearBinning(nBins[0], binMin[0], binMax[0]);
1704   Double_t *v0andBins = AliHFEtools::MakeLinearBinning(nBins[1], binMin[1], binMax[1]);
1705   Double_t *centralityBins = AliHFEtools::MakeLinearBinning(nBins[2], binMin[2], binMax[2]);
1706   Double_t *contributorsBins = AliHFEtools::MakeLinearBinning(nBins[3], binMin[3], binMax[3]);
1707   evCont->SetBinLimits(0, vertexBins);
1708   evCont->SetBinLimits(1, v0andBins);
1709   evCont->SetBinLimits(2, centralityBins);
1710   evCont->SetBinLimits(3, contributorsBins);
1711   delete[] vertexBins; delete[] v0andBins; delete[] centralityBins; delete[] contributorsBins;
1712
1713   fCFM->SetEventContainer(evCont);
1714 }
1715
1716 //____________________________________________________________
1717 void AliAnalysisTaskHFE::MakeParticleContainer(){
1718   //
1719   // Create the particle container for the correction framework manager and
1720   // link it
1721   //
1722   if(!fContainer) fContainer = new AliHFEcontainer("trackContainer");
1723   fVarManager->DefineVariables(fContainer);
1724
1725   // Create Correction Framework containers
1726   fContainer->CreateContainer("MCTrackCont", "Track Container filled with MC information", AliHFEcuts::kNcutStepsMCTrack);
1727   fContainer->CreateContainer("recTrackContReco", "Track Container filled with MC information", AliHFEcuts::kNcutStepsRecTrack + fPID->GetNumberOfPIDdetectors());
1728   fContainer->CreateContainer("recTrackContMC", "Track Container filled with MC information", AliHFEcuts::kNcutStepsRecTrack + fPID->GetNumberOfPIDdetectors());
1729
1730   fContainer->CreateContainer("hadronicBackground", "Container for Hadronic Background", 2);
1731   fContainer->CreateContainer("recTrackContDEReco", "Container for displaced electron analysis with Reco information", 1);
1732   fContainer->CreateContainer("recTrackContDEMC", "Container for displaced electron analysis with MC information", 1);
1733   fContainer->CreateContainer("recTrackContSecvtxReco", "Container for secondary vertexing analysis with Reco information", 1);
1734   fContainer->CreateContainer("recTrackContSecvtxMC", "Container for secondary vertexing analysis with MC information", 1);
1735
1736   if(HasMCData()){
1737     fContainer->CreateContainer("conversionElecs", "Container for weighted conversion electrons",7);
1738     fContainer->CreateContainer("mesonElecs", "Container for weighted electrons from meson decays",7);
1739     fContainer->Sumw2("conversionElecs");
1740     fContainer->Sumw2("mesonElecs");
1741
1742     if(fisNonHFEsystematics){
1743       const Char_t *sourceName[kElecBgSpecies]={"Pion","Eta","Omega","Phi","EtaPrime","Rho"};
1744       const Char_t *levelName[kBgLevels]={"Best","Lower","Upper"};
1745       for(Int_t iSource = 0; iSource < kElecBgSpecies; iSource++){
1746         for(Int_t iLevel = 0; iLevel < kBgLevels; iLevel++){
1747           fContainer->CreateContainer(Form("conversionElecs%s%s",sourceName[iSource],levelName[iLevel]), Form("Container for weighted conversion electrons from %s grandm., %s level",sourceName[iSource],levelName[iLevel]),5);
1748           fContainer->CreateContainer(Form("mesonElecs%s%s",sourceName[iSource],levelName[iLevel]), Form("Container for weighted electrons from %s decays, %s level",sourceName[iSource],levelName[iLevel]),5);
1749           fContainer->Sumw2(Form("conversionElecs%s%s",sourceName[iSource],levelName[iLevel]));
1750           fContainer->Sumw2(Form("mesonElecs%s%s",sourceName[iSource],levelName[iLevel]));
1751           if(IsPbPb())break;
1752         }
1753       }
1754     }
1755     //fContainer->CreateContainer("charmElecs", "Container for weighted charm electrons",2);
1756   }
1757
1758   fContainer->CreateCorrelationMatrix("correlationstepafterPID","THnSparse with correlations");
1759   fContainer->CreateCorrelationMatrix("correlationstepafterDE","THnSparse with correlations");
1760   if(!fVarManager->IsVariableDefined("centrality")) {
1761     //printf("Create the two other correlation maps\n");
1762     fContainer->CreateCorrelationMatrix("correlationstepbeforePID","THnSparse with correlations");
1763     fContainer->CreateCorrelationMatrix("correlationstepafterTOF","THnSparse with correlations");
1764   }
1765
1766   // Define the step names
1767   for(UInt_t istep = 0; istep < AliHFEcuts::kNcutStepsMCTrack; istep++){
1768     fContainer->SetStepTitle("MCTrackCont", AliHFEcuts::MCCutName(istep), istep);
1769   }
1770   for(UInt_t istep = 0; istep < AliHFEcuts::kNcutStepsRecTrack; istep++){
1771     fContainer->SetStepTitle("recTrackContReco", AliHFEcuts::RecoCutName(istep), istep);
1772     fContainer->SetStepTitle("recTrackContMC", AliHFEcuts::RecoCutName(istep), istep);
1773   }
1774   for(UInt_t ipid = 0; ipid < fPID->GetNumberOfPIDdetectors(); ipid++){
1775     fContainer->SetStepTitle("recTrackContReco", fPID->SortedDetectorName(ipid), AliHFEcuts::kNcutStepsRecTrack + ipid);
1776     fContainer->SetStepTitle("recTrackContMC", fPID->SortedDetectorName(ipid), AliHFEcuts::kNcutStepsRecTrack + ipid);
1777   }
1778 }
1779
1780 //____________________________________________________________
1781 void AliAnalysisTaskHFE::InitPIDperformanceQA(){
1782   // Add a histogram for Fake electrons
1783   const Int_t nDim=6;
1784   Int_t nBin[nDim] = {40, 8, 18, 2, 3, 3};
1785   //number of variables on the grid:pt,eta,phi,charge,
1786   const Double_t kPtbound[2] = {0.1, 20.};
1787   const Double_t kEtabound[2] = {-0.8, 0.8};
1788   const Double_t kPhibound[2] = {0., 2. * TMath::Pi()};
1789   const Double_t kChargebound[2] = {-1.1, 1.1};
1790   const Double_t kAddInf1bound[2] = {0., 3.};
1791   const Double_t kAddInf2bound[2] = {0., 3.};
1792   Double_t minima[nDim] = {kPtbound[0], kEtabound[0], kPhibound[0], kChargebound[0], kAddInf1bound[0], kAddInf2bound[0]};
1793   Double_t maxima[nDim] = {kPtbound[1], kEtabound[1], kPhibound[1], kChargebound[1], kAddInf1bound[1], kAddInf2bound[1]};
1794
1795   fQACollection->CreateTHnSparse("PIDperformance", "PID performance; pT [GeV/c]; theta [rad]; phi [rad]; charge; type (0 - not el, 1 - other el, 2 - HF el; flavor (0 - no, 1 - charm, 2 - bottom)", nDim, nBin, minima, maxima);
1796   fQACollection->CreateTHnSparse("SignalToBackgroundMC", "PID performance; pT [GeV/c]; theta [rad]; phi [rad]; charge; flavor (0 - no, 1 - charm, 2 - bottom); ITS Cluster (0 - no, 1 - first (and maybe second), 2 - second)", nDim, nBin, minima, maxima);
1797
1798   fQACollection->BinLogAxis("PIDperformance", 0);
1799   fQACollection->BinLogAxis("SignalToBackgroundMC", 0);
1800   fQACollection->Sumw2("PIDperformance");
1801   fQACollection->Sumw2("SignalToBackgroundMC");
1802 }
1803
1804 //____________________________________________________________
1805 void AliAnalysisTaskHFE::InitContaminationQA(){
1806   //
1807   // Add QA for Impact Parameter cut
1808   //
1809
1810   TObjArray *array = fVarManager->GetVariables();
1811   Int_t nvars = array->GetEntriesFast();
1812   for(Int_t v = 0; v < nvars; v++) {
1813     AliHFEvarManager::AliHFEvariable *variable = (AliHFEvarManager::AliHFEvariable *) array->At(v);
1814     if(!variable) continue;
1815     TString name(((AliHFEvarManager::AliHFEvariable *)variable)->GetName());
1816     if(!name.CompareTo("pt")) {
1817       const Int_t nBinPt  = variable->GetNumberOfBins();
1818       const Double_t *kPtRange = variable->GetBinning();
1819
1820       fQACollection->CreateTH1Farray("hadronsBeforeIPcut", "Hadrons before IP cut", nBinPt, kPtRange);
1821       fQACollection->CreateTH1Farray("hadronsAfterIPcut", "Hadrons after IP cut", nBinPt, kPtRange);
1822
1823       fQACollection->CreateTH2Farray("Ke3Kecorr", "Ke3 decay e and K correlation; Ke3K p_{t}; Ke3e p_{t}; ", nBinPt, kPtRange, 20,0.,20.);
1824       fQACollection->CreateTH2Farray("Ke3K0Lecorr", "Ke3 decay e and K0L correlation; Ke3K0L p_{t}; Ke3e p_{t}; ", nBinPt, kPtRange, 20,0.,20.);
1825       fQACollection->CreateTH1Farray("Kptspectra", "Charged Kaons: MC p_{t} ", nBinPt, kPtRange);
1826       fQACollection->CreateTH1Farray("K0Lptspectra", "K0L: MC p_{t} ", nBinPt, kPtRange);
1827
1828       const Double_t kDCAbound[2] = {-0.2, 0.2};
1829
1830       const Int_t nDimDca=6;
1831       const Int_t nBinDca[nDimDca] = { 8, nBinPt, 800, 12,  6, 2};
1832       Double_t minimaDca[nDimDca]  = { -1., 0., kDCAbound[0], -1., -1, -1.1};
1833       Double_t maximaDca[nDimDca]  = { 7., 20., kDCAbound[1], 11.,  5, 1.1};
1834
1835       Double_t *sourceBins = AliHFEtools::MakeLinearBinning(nBinDca[0], minimaDca[0], maximaDca[0]);
1836       Double_t *dcaBins = AliHFEtools::MakeLinearBinning(nBinDca[2], minimaDca[2], maximaDca[2]);
1837       Double_t *centralityBins = AliHFEtools::MakeLinearBinning(nBinDca[3], minimaDca[3], maximaDca[3]);
1838       Double_t *v0PIDBins = AliHFEtools::MakeLinearBinning(nBinDca[4], minimaDca[4], maximaDca[4]);
1839       Double_t *chargeBins = AliHFEtools::MakeLinearBinning(nBinDca[5], minimaDca[5], maximaDca[5]);
1840
1841       fQACollection->CreateTHnSparseNoLimits("Dca", "Dca; source (0-all, 1-charm,etc); pT [GeV/c]; dca; centrality bin; v0pid; charge", nDimDca, nBinDca);
1842       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(0, sourceBins);
1843       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(1, kPtRange);
1844       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(2, dcaBins);
1845       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(3, centralityBins);
1846       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(4, v0PIDBins);
1847       ((THnSparse*)(fQACollection->Get("Dca")))->SetBinEdges(5, chargeBins);
1848
1849       break;
1850     }
1851   }
1852
1853 }
1854
1855 //____________________________________________________________
1856 void AliAnalysisTaskHFE::InitHistoITScluster(){
1857   //
1858     // Initialize a temporary histogram to monitor the chi2/ITS cluster
1859     if(IsPbPb()) {
1860         const Int_t kNDim = 7;
1861         const Int_t kNBins[kNDim] = {88, 20,90,11, 160, 2, 1000};
1862         const Double_t kMin[kNDim] = {0.1, -1,0,  0.,0., 0,  0.};
1863         const Double_t kMax[kNDim] = {20., 1, 2.*TMath::Pi(), 11.,160, 2, 100.};
1864         fQACollection->CreateTHnSparse("fChi2perITScluster", "chi2/ITS cluster; p_{T} (GeV/c);eta;phi; centrality class;nclus;sharebit; #chi^{2}/ITS cluster", kNDim, kNBins, kMin, kMax);
1865         fQACollection->BinLogAxis("fChi2perITScluster", 0);
1866     }
1867     else
1868     {
1869         const Int_t kNDim = 3;
1870         const Int_t kNBins[kNDim] = {44, 11, 1000};
1871         const Double_t kMin[kNDim] = {0.1, 0., 0.};
1872         const Double_t kMax[kNDim] = {20., 11., 100.};
1873         fQACollection->CreateTHnSparse("fChi2perITScluster", "chi2/ITS cluster; p_{T} (GeV/c); centrality class; #chi^{2}/ITS cluster", kNDim, kNBins, kMin, kMax);
1874         fQACollection->BinLogAxis("fChi2perITScluster", 0);
1875     }
1876 }
1877
1878 //____________________________________________________________
1879 void AliAnalysisTaskHFE::SelectSpecialTrigger(const Char_t *trgclust, Int_t runMin, Int_t runMax){
1880   //
1881   // Select only events triggered by a special trigeer cluster
1882   //
1883   if(!fSpecialTrigger) fSpecialTrigger = new AliOADBContainer("SpecialTrigger");
1884   fSpecialTrigger->AppendObject(new TObjString(trgclust), runMin, runMax);
1885 }
1886
1887 //____________________________________________________________
1888 const Char_t * AliAnalysisTaskHFE::GetSpecialTrigger(Int_t run){
1889   //
1890   // Derive selected trigger string for given run
1891   //
1892   if(!fSpecialTrigger) return NULL;
1893   TObjString *trg = dynamic_cast<TObjString *>(fSpecialTrigger->GetObject(run));
1894   if(!trg) return NULL;
1895   return trg->String().Data();
1896 }
1897
1898 //____________________________________________________________
1899 void AliAnalysisTaskHFE::PrintStatus() const {
1900   //
1901   // Print Analysis status
1902   //
1903   printf("\n\tAnalysis Settings\n\t========================================\n\n");
1904   printf("\tSecondary Vertex finding: %s\n", GetPlugin(kSecVtx) ? "YES" : "NO");
1905   printf("\tPrimary Vertex resolution: %s\n", GetPlugin(kPriVtx) ? "YES" : "NO");
1906   printf("\tDisplaced electron analysis step: %s\n", GetPlugin(kDEstep) ? "YES" : "NO");
1907   printf("\tTagged Track Analysis: %s\n", GetPlugin(kTaggedTrackAnalysis) ? "YES" : "NO");
1908   printf("\n");
1909   printf("\tParticle Identification Detectors:\n");
1910   fPID->PrintStatus();
1911   printf("\n");
1912   printf("\tQA: \n");
1913   printf("\t\tPID: %s\n", IsQAOn(kPIDqa) ? "YES" :  "NO");
1914   printf("\t\tCUTS: %s\n", (fCuts != NULL && fCuts->IsQAOn()) ? "YES" : "NO");
1915   printf("\t\tMC: %s\n", IsQAOn(kMCqa) ? "YES" : "NO");
1916   printf("\n");
1917 }
1918
1919 //____________________________________________________________
1920 Bool_t AliAnalysisTaskHFE::FillProductionVertex(const AliVParticle * const track) const{
1921   //
1922   // Find the production vertex of the associated MC track
1923   //
1924   if(!fMCEvent) return kFALSE;
1925   const AliVParticle *mctrack = NULL;
1926   TString objectType = track->IsA()->GetName();
1927   if(objectType.CompareTo("AliESDtrack") == 0 || objectType.CompareTo("AliAODTrack") == 0){
1928     // Reconstructed track
1929     mctrack = fMCEvent->GetTrack(TMath::Abs(track->GetLabel()));
1930   } else {
1931     // MCParticle
1932     mctrack = track;
1933   }
1934
1935   if(!mctrack) return kFALSE;
1936
1937   Double_t xv = 0.0;
1938   Double_t yv = 0.0;
1939
1940   if(TString(mctrack->IsA()->GetName()).CompareTo("AliMCParticle") == 0){
1941     // case MCParticle
1942     const AliMCParticle *mcpart = dynamic_cast<const AliMCParticle *>(mctrack);
1943     if(mcpart){
1944       xv =  mcpart->Xv();
1945       yv =  mcpart->Yv();
1946     }
1947   } else {
1948     // case AODMCParticle
1949     const AliAODMCParticle *mcpart = dynamic_cast<const AliAODMCParticle *>(mctrack);
1950     if(mcpart){
1951       xv =  mcpart->Xv();
1952       yv =  mcpart->Yv();
1953     }
1954   }
1955
1956   //printf("xv %f, yv %f\n",xv,yv);
1957   fQACollection->Fill("radius", TMath::Abs(xv),TMath::Abs(yv));
1958
1959   return kTRUE;
1960
1961 }
1962 //__________________________________________
1963 void AliAnalysisTaskHFE::SwitchOnPlugin(Int_t plug){
1964   //
1965   // Switch on Plugin
1966   // Available:
1967   //  - Primary vertex studies
1968   //  - Secondary vertex Studies
1969   //  - Post Processing
1970   //
1971   switch(plug){
1972     case kPriVtx: SETBIT(fPlugins, plug); break;
1973     case kSecVtx: SETBIT(fPlugins, plug); break;
1974     case kIsElecBackGround: SETBIT(fPlugins, plug); break;
1975     case kPostProcess: SETBIT(fPlugins, plug); break;
1976     case kDEstep: SETBIT(fPlugins, plug); break;
1977     case kTaggedTrackAnalysis: SETBIT(fPlugins, plug); break;
1978     default: AliError("Unknown Plugin");
1979   };
1980 }
1981 //__________________________________________
1982 Bool_t AliAnalysisTaskHFE::ProcessCutStep(Int_t cutStep, AliVParticle *track){
1983   //
1984   // Check single track cuts for a given cut step
1985   // Fill the particle container
1986   //
1987   const Int_t kMCOffset = AliHFEcuts::kNcutStepsMCTrack;
1988   if(!fCFM->CheckParticleCuts(cutStep + kMCOffset, track)) return kFALSE;
1989   if(fVarManager->IsSignalTrack()) {
1990     fVarManager->FillContainer(fContainer, "recTrackContReco", cutStep, kFALSE);
1991     fVarManager->FillContainer(fContainer, "recTrackContMC", cutStep, kTRUE);
1992   }
1993   return kTRUE;
1994 }
1995 //___________________________________________________
1996 Bool_t AliAnalysisTaskHFE::ReadCentrality() {
1997   //
1998   // Recover the centrality of the event from ESD or AOD
1999   //
2000
2001   Float_t fCentralityLimitstemp[12];
2002   Float_t fCentralityLimitsdefault[12]= {0.,5.,10., 20., 30., 40., 50., 60.,70.,80., 90., 100.};
2003   if(!fPbPbUserCentralityBinning) memcpy(fCentralityLimitstemp,fCentralityLimitsdefault,sizeof(fCentralityLimitsdefault));
2004   else memcpy(fCentralityLimitstemp,fCentralityLimits,sizeof(fCentralityLimitsdefault));
2005
2006
2007   Int_t bin = -1;
2008   if(IsPbPb()) {
2009     // Centrality
2010     AliCentrality *centrality = fInputEvent->GetCentrality();
2011     fCentralityPercent = centrality->GetCentralityPercentile("V0M");
2012     //printf("centrality %f\n",fCentralityPercent);
2013
2014     for(Int_t ibin = 0; ibin < 11; ibin++){
2015       if(fCentralityPercent >= fCentralityLimitstemp[ibin] && fCentralityPercent < fCentralityLimitstemp[ibin+1]){
2016         bin = ibin;
2017         //printf("test bin %f, low %f, high %f, %d\n",fCentralityPercent,fCentralityLimitstemp[ibin],fCentralityLimitstemp[ibin+1],ibin);
2018         break;
2019       }
2020     }
2021
2022     if(bin == -1) bin = 11; // Overflow
2023   } else {
2024     // PP: Tracklet multiplicity, use common definition
2025     Int_t itsMultiplicity = GetITSMultiplicity(fInputEvent);
2026     Int_t multiplicityLimits[8] = {0, 1, 9, 17, 25, 36, 60, 500};
2027     for(Int_t ibin = 0; ibin < 7; ibin++){
2028       if(itsMultiplicity >= multiplicityLimits[ibin] && itsMultiplicity < multiplicityLimits[ibin + 1]){
2029         bin = ibin;
2030         break;
2031       }
2032     }
2033     if(bin == -1) bin = 7;  // Overflow
2034   }
2035   fCentralityF = bin;
2036   AliDebug(2, Form("Centrality class %d\n", fCentralityF));
2037
2038
2039   // contributors, to be outsourced
2040   const AliVVertex *vtx;
2041   if(IsAODanalysis()){
2042     AliAODEvent *fAOD = dynamic_cast<AliAODEvent *>(fInputEvent);
2043     if(!fAOD){
2044       AliError("AOD Event required for AOD Analysis");
2045       return kFALSE;
2046     }
2047     vtx = fAOD->GetPrimaryVertex();
2048   } else {
2049     AliESDEvent *fESD = dynamic_cast<AliESDEvent *>(fInputEvent);
2050     if(!fESD){
2051       AliError("ESD Event required for ESD Analysis");
2052       return kFALSE;
2053     }
2054     vtx = fESD->GetPrimaryVertexSPD();
2055   }
2056   if(!vtx){
2057     fContributors = 0.5;
2058     return kFALSE;
2059   }
2060   else {
2061     Int_t contributorstemp = vtx->GetNContributors();
2062     if( contributorstemp <=  0) {
2063       fContributors =  0.5;
2064       //printf("Number of contributors %d and vz %f\n",contributorstemp,vtx->GetZ());
2065     }
2066     else fContributors = 1.5;
2067     //printf("Number of contributors %d\n",contributorstemp);
2068   }
2069   return kTRUE;
2070 }
2071
2072 //___________________________________________________
2073 Int_t AliAnalysisTaskHFE::GetITSMultiplicity(AliVEvent *ev){
2074   //
2075   // Definition of the Multiplicity according to the JPSI group (F. Kramer)
2076   //
2077   Int_t nTracklets = 0;
2078   Int_t nAcc = 0;
2079   Double_t etaRange = 1.6;
2080
2081   if (ev->IsA() == AliAODEvent::Class()) {
2082     AliAODTracklets *tracklets = ((AliAODEvent*)ev)->GetTracklets();
2083     nTracklets = tracklets->GetNumberOfTracklets();
2084     for (Int_t nn = 0; nn < nTracklets; nn++) {
2085       Double_t theta = tracklets->GetTheta(nn);
2086       Double_t eta = -TMath::Log(TMath::Tan(theta/2.0));
2087       if (TMath::Abs(eta) < etaRange) nAcc++;
2088     }
2089   } else if (ev->IsA() == AliESDEvent::Class()) {
2090     nTracklets = ((AliESDEvent*)ev)->GetMultiplicity()->GetNumberOfTracklets();
2091     for (Int_t nn = 0; nn < nTracklets; nn++) {
2092        Double_t eta = ((AliESDEvent*)ev)->GetMultiplicity()->GetEta(nn);
2093       if (TMath::Abs(eta) < etaRange) nAcc++;
2094     }
2095   } else return -1;
2096
2097   return nAcc;
2098 }
2099
2100 //___________________________________________________
2101 Bool_t AliAnalysisTaskHFE::InitializeHadronBackground(Int_t run){
2102   //
2103   // Initialize background factors array from the AliOADBContainer
2104   // The container is expected to provide a TObjArray with the name
2105   // "hadronBackground" and the size 12 for the given run number
2106   //
2107   AliDebug(1, "Deriving hadronic background parameterization from OADB container");
2108   TObjArray *functions = dynamic_cast<TObjArray *>(fHadronBackgroundOADB->GetObject(run, "hadronBackground"));
2109   if(!functions){
2110     AliDebug(1, "Content in the OADB Container is not a TObjArray");
2111     fBackGroundFactorApply = kFALSE;
2112     return kFALSE;
2113   }
2114   if(functions->GetSize() < 12){
2115     AliDebug(1, Form("Size not matching: 12 expected, %d provided", functions->GetSize()));
2116     fBackGroundFactorApply = kFALSE;
2117     return kFALSE;
2118   }
2119   for(Int_t icent = 0; icent < 12; icent++) fkBackGroundFactorArray[icent] = dynamic_cast<const TF1 *>(functions->UncheckedAt(icent));
2120   return kTRUE;
2121 }
2122
2123 //___________________________________________________
2124 void AliAnalysisTaskHFE::RejectionPileUpVertexRangeEventCut() {
2125   //
2126   // Recover the centrality of the event from ESD or AOD
2127   //
2128  if(IsAODanalysis()){
2129
2130    AliAODEvent *fAOD = dynamic_cast<AliAODEvent *>(fInputEvent);
2131    if(!fAOD){
2132      AliError("AOD Event required for AOD Analysis");
2133        return;
2134    }
2135    // PileUp
2136    fIdentifiedAsPileUp = kFALSE;
2137    if(fRemovePileUp && fAOD->IsPileupFromSPD()) fIdentifiedAsPileUp = kTRUE;
2138    // Z vertex
2139    fIdentifiedAsOutInz = kFALSE;
2140    //printf("Z vertex %f and out %f\n",fAOD->GetPrimaryVertex()->GetZ(),fCuts->GetVertexRange());
2141    if(TMath::Abs(fAOD->GetPrimaryVertex()->GetZ()) > fCuts->GetVertexRange()) fIdentifiedAsOutInz = kTRUE;
2142    // Event Cut
2143    fPassTheEventCut = kTRUE;
2144    if(!fCFM->CheckEventCuts(AliHFEcuts::kEventStepReconstructed, fAOD)) fPassTheEventCut = kFALSE;
2145
2146
2147  } else {
2148
2149    AliDebug(3, "Processing ESD Centrality");
2150    AliESDEvent *fESD = dynamic_cast<AliESDEvent *>(fInputEvent);
2151    if(!fESD){
2152      AliError("ESD Event required for ESD Analysis");
2153        return;
2154    }
2155    // PileUp
2156    fIdentifiedAsPileUp = kFALSE;
2157    if(fRemovePileUp && fESD->IsPileupFromSPD()) fIdentifiedAsPileUp = kTRUE;
2158    // Z vertex
2159    fIdentifiedAsOutInz = kFALSE;
2160    if (IsPbPb()) {
2161      //printf("PbPb\n");
2162      if(fESD->GetPrimaryVertex()){
2163        if(TMath::Abs(fESD->GetPrimaryVertex()->GetZ()) > fCuts->GetVertexRange()) fIdentifiedAsOutInz = kTRUE;
2164      }
2165    }
2166    else {
2167      //printf("pp\n");
2168      if(fESD->GetPrimaryVertexTracks()){
2169        if(TMath::Abs(fESD->GetPrimaryVertexTracks()->GetZ()) > fCuts->GetVertexRange()) fIdentifiedAsOutInz = kTRUE;
2170      }
2171    }
2172    //Event Cut
2173    fPassTheEventCut = kTRUE;
2174    if(!fCFM->CheckEventCuts(AliHFEcuts::kEventStepReconstructed, fESD)) fPassTheEventCut = kFALSE;
2175
2176
2177  }
2178
2179 }
2180