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Updates for TRD HFE analysis
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1 /**************************************************************************
2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
3 *                                                                        *
4 * Author: The ALICE Off-line Project.                                    *
5 * Contributors are mentioned in the code where appropriate.              *
6 *                                                                        *
7 * Permission to use, copy, modify and distribute this software and its   *
8 * documentation strictly for non-commercial purposes is hereby granted   *
9 * without fee, provided that the above copyright notice appears in all   *
10 * copies and that both the copyright notice and this permission notice   *
11 * appear in the supporting documentation. The authors make no claims     *
12 * about the suitability of this software for any purpose. It is          *
13 * provided "as is" without express or implied warranty.                  *
14 **************************************************************************/
15 //
16 // Debug tree task
17 // 
18 // Authors:
19 //   Markus Fasel <M.Fasel@gsi.de>
20 //
21 #include <TBits.h>
22 #include <TString.h>
23
24 #include "AliAnalysisManager.h"
25 #include "AliCentrality.h"
26 #include "AliESDEvent.h"
27 #include "AliESDtrack.h"
28 #include "AliESDtrackCuts.h"
29 #include "AliESDVertex.h"
30 #include "AliHFEcuts.h"
31 #include "AliHFEsignalCuts.h"
32 #include "AliInputEventHandler.h"
33 #include "AliLog.h"
34 #include "AliMCEvent.h"
35 #include "AliMCEventHandler.h"
36 #include "AliMCParticle.h"
37 #include "AliStack.h"
38 #include "AliPIDResponse.h"
39 #include "AliTrackReference.h"
40 #include "AliVEvent.h"
41 #include "AliHFEpidTPC.h"
42 #include "AliHFEpidTRD.h"
43 #include "AliHFEmcQA.h"
44 #include "TTreeStream.h"
45
46 #include "AliHFEdebugTreeTask.h"
47
48 ClassImp(AliHFEdebugTreeTask)
49
50 AliHFEdebugTreeTask::AliHFEdebugTreeTask():
51   AliAnalysisTaskSE(),
52   fTrackCuts(NULL),
53   fSignalCuts(NULL),
54   fTRDpid(NULL),
55   fTPCpid(NULL),
56   fExtraCuts(NULL),
57   fNclustersTPC(70),
58   fNclustersTPCPID(0),
59   fNclustersITS(2),
60   fFilename("HFEtree.root"),
61   fDebugTree(NULL),
62   fNparents(-1)
63 {
64
65 }
66
67 AliHFEdebugTreeTask::AliHFEdebugTreeTask(const char *name):
68   AliAnalysisTaskSE(name),
69   fTrackCuts(NULL),
70   fSignalCuts(NULL),
71   fTRDpid(NULL),
72   fTPCpid(NULL),
73   fExtraCuts(NULL),
74   fNclustersTPC(70),
75   fNclustersTPCPID(0),
76   fNclustersITS(2),
77   fFilename("HFEtree.root"),
78   fDebugTree(NULL),
79   fNparents(-1)
80 {
81   fTRDpid = new AliHFEpidTRD("QAtrdPID");
82   fTPCpid = new AliHFEpidTPC("QAtpcPID");
83 }
84
85 AliHFEdebugTreeTask::~AliHFEdebugTreeTask(){
86     if(fDebugTree) delete fDebugTree;
87     if(fTRDpid) delete fTRDpid;
88     if(fTPCpid) delete fTPCpid;
89 }
90
91 void AliHFEdebugTreeTask::UserCreateOutputObjects(){
92   //
93   // Create debug tree, signal cuts and track cuts
94   //
95   fDebugTree = new TTreeSRedirector(fFilename.Data());
96
97   fSignalCuts = new AliHFEsignalCuts("HFEsignalCuts", "HFE MC Signal definition");
98
99   fTrackCuts = new AliHFEcuts("fTrackCuts", "Basic HFE track cuts");
100   fTrackCuts->CreateStandardCuts();
101   // Track cuts
102   fTrackCuts->SetMinNClustersTPC(fNclustersTPC);
103   fTrackCuts->SetMinRatioTPCclusters(0);
104   fTrackCuts->SetTPCmodes(AliHFEextraCuts::kFound, AliHFEextraCuts::kFoundOverFindable); 
105   fTrackCuts->SetMinNClustersTPCPID(fNclustersTPCPID);
106   fTrackCuts->SetMinNClustersITS(fNclustersITS);
107   // Event cuts
108   fTrackCuts->SetUseMixedVertex(kTRUE);
109   fTrackCuts->SetVertexRange(10.);
110   fTrackCuts->Initialize();
111
112   fExtraCuts = new AliHFEextraCuts("hfeExtraCuts","HFE Extra Cuts");
113
114 }
115
116 void AliHFEdebugTreeTask::UserExec(Option_t *){
117   //
118   // User Exec: Fill debug Tree
119   // 
120
121   // Get PID response
122   AliPIDResponse *pid = NULL;
123   AliInputEventHandler *handler = dynamic_cast<AliInputEventHandler *>(AliAnalysisManager::GetAnalysisManager()->GetInputEventHandler());
124   if(handler){
125     pid = handler->GetPIDResponse();
126   } else {
127     AliError("No Handler");
128   }
129   if(!pid){
130     AliError("No PID response");
131     return;
132   }
133   if(!fInputEvent) {
134     AliError("No Input event");
135     return;
136   }
137
138   AliESDtrack copyTrack;
139   
140   fTrackCuts->SetRecEvent(fInputEvent);
141
142   // Cut event
143   if(fInputEvent->IsPileupFromSPD(3, 0.8, 3., 2., 5)){
144   AliDebug(1, "Event flagged as pileup\n");
145     return;
146   }
147   if(!fTrackCuts->CheckEventCuts("fCutsEvRec", fInputEvent)){
148     AliDebug(1, "Event rejected by the event cuts\n");
149     return;
150   }
151
152   // Get run number
153   Int_t run = fInputEvent->GetRunNumber();
154
155   // Derive trigger 
156   UInt_t trigger = fInputHandler->IsEventSelected();
157   Bool_t isMBTrigger = trigger & AliVEvent::kMB;
158   Bool_t isCentralTrigger = trigger & AliVEvent::kCentral;
159   Bool_t isSemicentralTrigger = trigger & AliVEvent::kSemiCentral;
160   Bool_t isEMCALTrigger = trigger & AliVEvent::kEMCEJE;
161
162   // Check if MC information is available
163   Bool_t mcthere = dynamic_cast<AliMCEventHandler *>(AliAnalysisManager::GetAnalysisManager()->GetMCtruthEventHandler()) != NULL;
164   if(mcthere){ 
165     fTrackCuts->SetMCEvent(fMCEvent);
166     fSignalCuts->SetMCEvent(fMCEvent);
167   }
168
169   // MC get stack
170   AliStack* stack = 0x0;
171   if(mcthere){
172       stack = fMCEvent->Stack();
173       if(!stack) AliError("No Stack");
174   }
175
176   // Get Primary Vertex
177   const AliVVertex *vertex = fInputEvent->GetPrimaryVertex();
178   Double_t vtx[3];
179   vertex->GetXYZ(vtx);
180   Double_t ncontrib = fInputEvent->GetPrimaryVertex()->GetNContributors();
181
182   // Get centrality
183   Float_t centrality = -1.;
184   AliESDEvent *event = (dynamic_cast<AliESDEvent *>(fInputEvent));
185   if(!event) return;
186   TString beamtype = event->GetBeamType();
187   //printf("Beam type %s\n",(const char*)beamtype);
188   if(!beamtype.CompareTo("Pb-Pb") || !beamtype.CompareTo("A-A")){
189     // Heavy ion run
190     AliDebug(1, "Heavy-Ion event\n");
191     AliCentrality *hicent = fInputEvent->GetCentrality();
192     centrality = hicent->GetCentralityPercentile("V0M");
193   }
194
195   if(!fExtraCuts){
196     fExtraCuts = new AliHFEextraCuts("hfeExtraCuts","HFE Extra Cuts");
197   }
198   fExtraCuts->SetRecEventInfo(event);
199
200   // Store event selection variables
201   (*fDebugTree) << "EventDebug"
202                 << "Centrality="              << centrality
203                 << "VertexZ="                 << vtx[2]
204                 << "NumberOfContributors="    << ncontrib
205                 << "run="                     << run
206                 << "\n";
207
208   // Common variables
209   Double_t charge, eta, phi, momentum, transversemomentum;
210   Int_t source;
211       
212   // Monte-Carlo loop
213   if(mcthere){
214     AliMCParticle * mcpart;
215     for(Int_t itrk = 0; itrk < fMCEvent->GetNumberOfTracks(); itrk++){
216       mcpart = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(itrk));
217       if(!mcpart) continue;
218       if(!fTrackCuts->CheckParticleCuts(static_cast<UInt_t>(AliHFEcuts::kStepMCGenerated), mcpart)) continue;
219       // Kinematics
220       charge = mcpart->Charge() > 0. ? 1. : -1.;
221       momentum = mcpart->P() * charge;
222       transversemomentum = mcpart->Pt() * charge;
223       eta = mcpart->Eta();
224       phi = mcpart->Phi();
225       Int_t pdg = mcpart->Particle()->GetPdgCode();
226       
227       // Get Production Vertex in radial direction
228       Double_t vx = mcpart->Particle()->Vx(), 
229               vy = mcpart->Particle()->Vy(); 
230       Double_t productionVertex = TMath::Sqrt(vx*vx+vy*vy);
231       
232       // Get Mother PDG code of the particle
233       Int_t motherPdg = 0;
234       Int_t motherlabel = mcpart->Particle()->GetFirstMother();
235       if(motherlabel >= 0 && motherlabel < fMCEvent->GetNumberOfTracks()){
236         AliMCParticle *mother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(motherlabel));
237         if(mother) motherPdg = mother->Particle()->GetPdgCode();
238       }
239       
240       // derive source
241       source = 5;
242       if(fSignalCuts->IsCharmElectron(mcpart)) source = 0;
243       else if(fSignalCuts->IsBeautyElectron(mcpart)) source = 1;
244       else if(fSignalCuts->IsGammaElectron(mcpart)) source = 2;
245       else if(fSignalCuts->IsNonHFElectron(mcpart)) source = 3;
246       else if(TMath::Abs(pdg) == 11) source = 4;
247       else source = 5;
248       
249       // Momemntum at the inner wall of the TPC
250       Double_t pTPC = 0., ptTPC = 0.;
251       AliTrackReference *ref = FindTrackReference(mcpart, 80, 270, AliTrackReference::kTPC);
252       if(ref){
253         pTPC = ref->P();
254         ptTPC = ref->Pt();
255       }
256
257
258
259     (*fDebugTree) << "MCDebug"
260                     << "centrality="          << centrality
261                     << "MBtrigger="           << isMBTrigger 
262                     << "CentralTrigger="      << isCentralTrigger
263                     << "SemicentralTrigger="  << isSemicentralTrigger
264                     << "EMCALtrigger="        << isEMCALTrigger
265                     << "run="                 << run
266                     << "p="                   << momentum
267                     << "pt="                  << transversemomentum
268                     << "eta="                 << eta
269                     << "phi="                 << phi
270                     << "pdg="                 << pdg
271                     << "ProductionVertex="    << productionVertex
272                     << "motherPdg="           << motherPdg
273                     << "source="              << source
274                     << "\n";
275     }
276   }
277   
278   AliESDtrack *track;
279   Double_t mcp, mcpt, mcptTPC, mcpTPC;  // MC Variables added to the debug tree
280   for(Int_t itrack = 0; itrack < fInputEvent->GetNumberOfTracks(); itrack++){
281     // fill the tree
282     track = dynamic_cast<AliESDtrack *>(fInputEvent->GetTrack(itrack));
283     if(!track) continue;
284     // Cut track (Only basic track cuts)
285     if(!fTrackCuts->CheckParticleCuts(AliHFEcuts::kNcutStepsMCTrack + AliHFEcuts::kStepRecKineITSTPC, track)) continue;
286     // Debug streaming of PID-related quantities
287     copyTrack.~AliESDtrack();
288     new(&copyTrack) AliESDtrack(*track);
289     if(fTPCpid->HasEtaCorrection()) fTPCpid->ApplyEtaCorrection(&copyTrack, AliHFEpidObject::kESDanalysis); // Apply Eta Correction on copy track
290     Double_t nSigmaTOF = pid->NumberOfSigmasTOF(track, AliPID::kElectron);
291     Double_t nSigmaTPC = pid->NumberOfSigmasTPC(&copyTrack, AliPID::kElectron);
292     //if(TMath::Abs(nSigmaTOF) > 5) continue;
293     // we are not interested in tracks which are more than 5 sigma away from the electron hypothesis in either TOF or TPC
294     Double_t tPCdEdx = copyTrack.GetTPCsignal();
295     // Signal, source and MCPID
296     Bool_t signal = kTRUE;
297     source = 5;
298     mcp = mcpt = mcpTPC = mcptTPC = 0.;
299
300
301
302     Double_t bgcategory = 0.;
303     Int_t mArr = -1;
304     Int_t mesonID = -999;
305     Double_t xr[3]={-999,-999,-999};
306     Double_t eR=-999;
307     Double_t eZ=-999;
308     Double_t unique=-999;
309     Double_t mesonunique=-999;
310     Double_t mesonR=-999;
311     Double_t mesonZ=-999;
312     Double_t mesonMomPdg=-999;
313     Double_t mesonMomPt=-999;
314     Double_t mesonGMomPdg=-999;
315     Double_t mesonGGMomPdg=-999;
316     Double_t mesonPt = -999;
317     Double_t mceta = -999;
318     Double_t mcphi = -999;
319     Int_t mcpdg;
320
321     if(mcthere){
322       // Signal
323       AliMCParticle *mctrack;
324       if((mctrack = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(TMath::Abs(track->GetLabel()))))){
325         if(!fTrackCuts->CheckParticleCuts(AliHFEcuts::kStepMCGenerated, mctrack)) signal = kFALSE; 
326       }
327   
328       // Source
329       if(fSignalCuts->IsCharmElectron(track)) source = 0;
330       else if(fSignalCuts->IsBeautyElectron(track)) source = 1;
331       else if(fSignalCuts->IsGammaElectron(track)) source = 2;
332       else if(fSignalCuts->IsNonHFElectron(track)) source = 3;
333       else if(mctrack && (TMath::Abs(mctrack->Particle()->GetPdgCode()) == 11)) source = 4;
334       else source = 5;
335
336       if(!mctrack) continue;
337
338       // Kinematics
339       mcpt  = mctrack->Pt();
340       mcp   = mctrack->P();
341       mceta = mctrack->Eta();
342       mcphi = mctrack->Phi();
343       mcpdg = mctrack->Particle()->GetPdgCode();
344
345       AliTrackReference *ref = FindTrackReference(mctrack, 80, 270, AliTrackReference::kTPC);
346       if(ref){
347         mcpTPC = ref->P();
348         mcptTPC = ref->Pt();
349       }
350
351     
352       TParticle *mctrack1 = mctrack->Particle();
353       mesonID=GetElecSourceMC(mctrack1);
354       if(mesonID==AliHFEmcQA::kGammaPi0 || mesonID==AliHFEmcQA::kPi0) mArr=0;                //pion
355       else if(mesonID==AliHFEmcQA::kGammaEta || mesonID==AliHFEmcQA::kEta) mArr=1;           //eta
356       else if(mesonID==AliHFEmcQA::kGammaOmega || mesonID==AliHFEmcQA::kOmega) mArr=2;       //omega
357       else if(mesonID==AliHFEmcQA::kGammaPhi || mesonID==AliHFEmcQA::kPhi) mArr=3;           //phi
358       else if(mesonID==AliHFEmcQA::kGammaEtaPrime || mesonID==AliHFEmcQA::kEtaPrime) mArr=4; //etaprime
359       else if(mesonID==AliHFEmcQA::kGammaRho0 || mesonID==AliHFEmcQA::kRho0) mArr=5;         //rho
360     
361       mctrack->XvYvZv(xr);
362     
363       eR= TMath::Sqrt(xr[0]*xr[0]+xr[1]*xr[1]);
364       eZ = xr[2];
365       TParticle *mctrackt = mctrack->Particle();
366       unique=mctrackt->GetUniqueID();
367     
368       AliMCParticle *mctrackmother = NULL;
369       AliMCParticle *mctrackmother2 = NULL;
370
371       if(!(mArr<0)){
372     if(mesonID>=AliHFEmcQA::kGammaPi0) {  // conversion electron, be careful with the enum odering
373         Int_t glabel=TMath::Abs(mctrack->GetMother()); // gamma label
374         if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
375       glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's label
376       if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
377           mesonPt = mctrackmother->Pt(); //meson pt
378           bgcategory = 1.;
379           mctrackmother->XvYvZv(xr);
380           mesonR = TMath::Sqrt(xr[0]*xr[0]+xr[1]*xr[1]);
381           mesonZ = xr[2];
382
383           mctrackt = mctrackmother->Particle();
384           if(mctrackt){
385             mesonunique = mctrackt->GetUniqueID();
386           }
387
388         Int_t glabel2=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother
389         if((mctrackmother2 = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel2)))){
390             mesonMomPdg=mctrackmother2->PdgCode();
391             mesonMomPt=mctrackmother2->Pt();
392         }
393
394           if(glabel>fMCEvent->GetNumberOfPrimaries()) {
395         bgcategory = 2.;
396         glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother
397         if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
398             mesonMomPdg=mctrackmother->PdgCode();
399             mesonMomPt=mctrackmother->Pt();
400             if(TMath::Abs(mctrackmother->PdgCode())==310){
401           bgcategory = 3.;
402           glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother's mother
403           if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
404               mesonGMomPdg=mctrackmother->PdgCode();
405               glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother
406               if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
407             mesonGGMomPdg=mctrackmother->PdgCode();
408               }
409           }
410             }
411         }
412           }
413       }
414         }
415     }
416     else{ // nonHFE except for the conversion electron
417         Int_t glabel=TMath::Abs(mctrack->GetMother());
418         if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
419       mesonPt = mctrackmother->Pt(); //meson pt
420       bgcategory = -1.;
421       mctrackmother->XvYvZv(xr);
422       mesonR = TMath::Sqrt(xr[0]*xr[0]+xr[1]*xr[1]);
423       mesonZ = xr[2];
424
425       mctrackt = mctrackmother->Particle();
426       if(mctrackt){
427           mesonunique = mctrackt->GetUniqueID();
428       }
429       if(glabel>fMCEvent->GetNumberOfPrimaries()) {
430           bgcategory = -2.;
431           glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother
432           if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
433         mesonMomPdg=mctrackmother->PdgCode();
434         mesonMomPt=mctrackmother->Pt();
435         if(TMath::Abs(mctrackmother->PdgCode())==310){
436             bgcategory = -3.;
437             glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother's mother
438             if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
439                                   mesonGMomPdg=mctrackmother->PdgCode();
440           glabel=TMath::Abs(mctrackmother->GetMother()); // gamma's mother's mother
441           if((mctrackmother = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(glabel)))){
442                                     mesonGGMomPdg=mctrackmother->PdgCode();
443           }
444             }
445         }
446           }
447       }
448         }
449     }
450       }
451
452
453
454     }
455     // Get V0 tag (if available)
456     Int_t v0pid = -1;
457     if(track->TestBit(BIT(14))) v0pid = AliPID::kElectron;
458     else if(track->TestBit(BIT(15))) v0pid = AliPID::kPion;
459     else if(track->TestBit(BIT(16))) v0pid = AliPID::kProton;
460     // Kinematics
461     charge = track->Charge() > 0 ? 1. : -1.;
462     eta = track->Eta();
463     phi = track->Phi();
464     momentum = track->P() * charge;
465     transversemomentum = track->Pt() * charge;
466     Double_t momentumTPC = track->GetTPCInnerParam() ? track->GetTPCInnerParam()->P() : 0.;
467     Double_t transversemomentumTPC = track->GetTPCInnerParam() ? track->GetTPCInnerParam()->Pt() : 0.;
468     // ITS number of clusters
469     UChar_t nclustersITS = track->GetITSclusters(NULL);
470     Double_t chi2matching =  track->GetChi2TPCConstrainedVsGlobal(dynamic_cast<const AliESDVertex *>(vertex));
471     Double_t chi2PerClusterITS = 0.0;
472     if (nclustersITS != 0) chi2PerClusterITS = track->GetITSchi2() / Float_t(nclustersITS);
473     // TPC number of clusters (different definitions)
474     UChar_t nclustersTPCfit = track->GetTPCNcls();
475     UChar_t nclustersTPCall = 0;
476     const TBits &clusterTPC = track->GetTPCClusterMap();
477     nclustersTPCall = clusterTPC.CountBits();
478     UChar_t nclustersTPCPID = track->GetTPCsignalN();
479     UChar_t nfindableTPC =  track->GetTPCNclsF();
480     Double_t clusterRatioTPCfit = 0.0;
481     if((static_cast<Double_t>(nfindableTPC))>0.0) clusterRatioTPCfit = static_cast<Double_t>(nclustersTPCfit)/static_cast<Double_t>(nfindableTPC);
482     Double_t clusterRatioTPCall = 0.0;
483     if((static_cast<Double_t>(nfindableTPC))>0.0) clusterRatioTPCall = static_cast<Double_t>(nclustersTPCall)/static_cast<Double_t>(nfindableTPC);
484     UChar_t nclustersTPCshared = 0;
485     Float_t ncrossedRowsTPC = track->GetTPCCrossedRows();
486     const TBits &sharedTPC = track->GetTPCSharedMap();
487     for(Int_t ibit = 0; ibit < 160; ibit++) if(sharedTPC.TestBitNumber(ibit)) nclustersTPCshared++;
488     // TRD clusters and tracklets
489     UChar_t nclustersTRD = track->GetTRDncls();
490     UChar_t ntrackletsTRDPID = track->GetTRDntrackletsPID();
491     // ITS and TRD acceptance maps
492     UChar_t hasClusterITS[6], statusITS[6], hasTrackletTRD[6];
493     UChar_t itsPixel = track->GetITSClusterMap();
494     for(Int_t icl = 0; icl < 6; icl++){ 
495       hasClusterITS[icl] = TESTBIT(itsPixel, icl) ? 1 : 0;
496       if(CheckITSstatus(track, icl)) statusITS[icl] = 1;
497       else statusITS[icl] = 0;
498     }
499     Double_t trddEdxSum[6];
500     for(Int_t a=0;a<6;a++) { trddEdxSum[a]= 0.;}
501     for(Int_t itl = 0; itl < 6; itl++){
502       Int_t nSliceNonZero = 0;
503       trddEdxSum[itl] = track->GetTRDslice(itl, 0); // in new reconstruction slice 0 contains the total charge
504       for(Int_t islice = 0; islice < 8; islice++){
505         if(track->GetTRDslice(itl, islice) > 0.001) nSliceNonZero++;
506       }
507       hasTrackletTRD[itl] = nSliceNonZero ? 1 : 0;
508     }
509     // TRD PID
510     Double_t pidprobs[5];
511     track->GetTRDpid(pidprobs);
512     Double_t likeEleTRD = pidprobs[0];
513     Double_t likeEleTRDn = likeEleTRD/(likeEleTRD + pidprobs[2]);
514     Double_t trdtruncmean1 = fTRDpid->GetTRDSignalV1(track, 0.6);
515     Double_t trdtruncmean2 = fTRDpid->GetTRDSignalV2(track, 0.6);
516
517     // DCA
518     Float_t b[2] = {0.,0.};
519     Float_t bCov[3] = {0.,0.,0.};
520     track->GetImpactParameters(b,bCov);
521     Double_t dca = TMath::Sqrt(b[0]*b[0]+b[1]*b[1]); // impact parameter space
522     Double_t dcaSR=0, dcaSZ=0;
523     if(bCov[0]>0) dcaSR = b[0]/TMath::Sqrt(bCov[0]); // normalised impact parameter xy
524     if(bCov[2]>0) dcaSZ = b[1]/TMath::Sqrt(bCov[2]); // normalised impact parameter z
525     Double_t dcaS = AliESDtrackCuts::GetSigmaToVertex(track); // n_sigma
526
527     // HFE DCA
528     Double_t hfeb[2] = {-99.,-99.};
529     Double_t hfebCov[3] = {-999.,-999.,-999.};
530     fExtraCuts->GetHFEImpactParameters(track, hfeb, hfebCov);
531
532     Double_t tofdx= -999.0;
533     Double_t tofdz= -999.0;
534     tofdx=track->GetTOFsignalDx();
535     tofdz=track->GetTOFsignalDz();
536
537     // TOF track status
538     UInt_t status = 0;
539     status = track->GetStatus();
540     Bool_t hasTOFout  = status&AliESDtrack::kTOFout; 
541     Bool_t hasTOFtime = status&AliESDtrack::kTIME;
542     Bool_t hasTOFpid  = status&AliESDtrack::kTOFpid;
543     Bool_t hasgoodTOF     = kFALSE;
544     if (hasTOFout && hasTOFtime && hasTOFpid) hasgoodTOF = kTRUE;
545
546     // TRD track status
547     Bool_t hasTRDin = status&AliESDtrack::kTRDin;
548
549
550     // TOF mismatch (particle spectra group)
551     Int_t mismatchlevel=0; // default value; in data always 0
552     if(mcthere){
553         Int_t tofLabel[3];
554         track->GetTOFLabel(tofLabel);
555         if(TMath::Abs(track->GetLabel()) != TMath::Abs(tofLabel[0]) || tofLabel[1] > 0) mismatchlevel=1;
556         TParticle *matchedTrack = stack->Particle(TMath::Abs(tofLabel[0]));
557         if(TMath::Abs(matchedTrack->GetFirstMother()) == TMath::Abs(track->GetLabel()))
558         {
559             if(mismatchlevel==1) mismatchlevel=3;
560             else mismatchlevel=2;
561         }
562     }
563
564
565     // Fill Tree
566     (*fDebugTree) << "PIDdebug"
567                   << "centrality="          << centrality
568                   << "MBtrigger="           << isMBTrigger 
569                   << "CentralTrigger="      << isCentralTrigger
570                   << "SemicentralTrigger="  << isSemicentralTrigger
571                   << "EMCALtrigger="        << isEMCALTrigger
572                   << "signal="              << signal
573                   << "source="              << source
574                   << "v0pid="               << v0pid
575                   << "run="                 << run
576                   << "p="                   << momentum
577                   << "ptpc="                << momentumTPC
578                   << "pt="                  << transversemomentum
579                   << "pttpc="               << transversemomentumTPC
580                   << "mcp="                 << mcp
581                   << "mcpt="                << mcpt
582                   << "mcpTPC="              << mcpTPC
583                   << "mcptTPC="             << mcptTPC
584                   << "mceta="               << mceta
585                   << "mcphi="               << mcphi
586                   << "mcpdg="               << mcpdg
587                   << "eta="                 << eta
588                   << "phi="                 << phi
589                   << "ntracklets="          << ntrackletsTRDPID
590                   << "nclustersTPC="        << nclustersTPCfit
591                   << "nclustersTPCall="     << nclustersTPCall
592                   << "nclustersTPCPID="     << nclustersTPCPID
593                   << "nclustersTPCshared="  << nclustersTPCshared
594                   << "ncrossedRowsTPC="     << ncrossedRowsTPC
595                   << "clusterRatioTPC="     << clusterRatioTPCfit
596                   << "clusterRatioTPCall="  << clusterRatioTPCall
597                   << "nclustersITS="        << nclustersITS
598                   << "nclusters="           << nclustersTRD
599                   << "chi2matching="        << chi2matching
600                   << "chi2PerClusterITS="   << chi2PerClusterITS
601                   << "its0="                << hasClusterITS[0]
602                   << "its1="                << hasClusterITS[1]
603                   << "its2="                << hasClusterITS[2]
604                   << "its3="                << hasClusterITS[3]
605                   << "its4="                << hasClusterITS[4]
606                   << "its5="                << hasClusterITS[5]
607                   << "statusITS0="          << statusITS[0]
608                   << "statusITS1="          << statusITS[1]
609                   << "statusITS2="          << statusITS[2]
610                   << "statusITS3="          << statusITS[3]
611                   << "statusITS4="          << statusITS[4]
612                   << "statusITS5="          << statusITS[5]
613                   << "trd0="                << hasTrackletTRD[0]
614                   << "trd1="                << hasTrackletTRD[1]
615                   << "trd2="                << hasTrackletTRD[2]
616                   << "trd3="                << hasTrackletTRD[3]
617                   << "trd4="                << hasTrackletTRD[4]
618                   << "trd5="                << hasTrackletTRD[5]
619                   << "TRDdEdxl0="           << trddEdxSum[0]
620                   << "TRDdEdxl1="           << trddEdxSum[1]
621                   << "TRDdEdxl2="           << trddEdxSum[2]
622                   << "TRDdEdxl3="           << trddEdxSum[3]
623                   << "TRDdEdxl4="           << trddEdxSum[4]
624                   << "TRDdEdxl5="           << trddEdxSum[5]
625                   << "TOFsigmaEl="          << nSigmaTOF
626                   << "TPCsigmaEl="          << nSigmaTPC
627                   << "TPCdEdx="             << tPCdEdx
628                   << "TRDlikeEl="           << likeEleTRD
629                   << "TRDlikeEln="          << likeEleTRDn
630                   << "trdtruncmean1="       << trdtruncmean1
631                   << "trdtruncmean2="       << trdtruncmean2
632                   << "dcaR="                << b[0]
633                   << "dcaZ="                << b[1]
634                   << "dca="                 << dca
635                   << "dcaSR="               << dcaSR
636                   << "dcaSZ="               << dcaSZ
637                   << "dcaS="                << dcaS
638                   << "hfedcaR="             << hfeb[0]
639                   << "hfedcaZ="             << hfeb[1]
640                   << "hfedcacovR="          << hfebCov[0]
641                   << "hfedcacovZ="          << hfebCov[2]
642                   << "vx="                  << vtx[0]
643                   << "vy="                  << vtx[1]
644                   << "vz="                  << vtx[2]
645                   << "tofdx="                << tofdx
646                   << "tofdz="                << tofdz
647                   << "statusTOFtracking="   << hasgoodTOF
648                   << "TOFmismatchlevel="    << mismatchlevel
649                   << "statusTRDtracking="   << hasTRDin
650                   << "ncontrib="            << ncontrib
651                   << "mesonID="             << mesonID
652                   << "eR="                  << eR
653                   << "mesonR="              << mesonR
654                   << "eZ="                  << eZ
655                   << "mesonZ="              << mesonZ
656                   << "unique="              << unique
657                   << "mesonunique="         << mesonunique
658                   << "bgcategory="          << bgcategory
659                   << "mesonpt="             << mesonPt
660                   << "mesonMomPdg="         << mesonMomPdg
661                   << "mesonGMomPdg="         << mesonGMomPdg
662                   << "mesonGGMomPdg="         << mesonGGMomPdg
663                   << "mesonMomPt="         << mesonMomPt
664                   << "\n";
665   }
666 }
667
668
669 void AliHFEdebugTreeTask::SetFileName(const char *filename){ fFilename = filename; }
670 //___________________________________________________________
671 AliTrackReference *AliHFEdebugTreeTask::FindTrackReference(AliMCParticle *track, Float_t minRadius, Float_t maxRadius, Int_t detectorID)
672 {
673   //
674   // Find the track reference
675   //
676   AliTrackReference *ref = NULL, *reftmp;
677   Float_t radius;
678   for(Int_t iref = 0; iref < track->GetNumberOfTrackReferences(); iref++){
679     reftmp = track->GetTrackReference(iref);
680     if(reftmp->DetectorId() != detectorID) continue;
681     radius = reftmp->R();
682     if(radius >= minRadius && radius < maxRadius){
683       ref = reftmp;
684       break;
685     } 
686     if(radius > maxRadius) break;
687   }
688   return ref;
689 }
690
691 //__________________________________________
692 Int_t AliHFEdebugTreeTask::GetElecSourceMC(TParticle * const mcpart)
693 {
694   // decay particle's origin 
695
696   if(!mcpart){
697     AliDebug(1, "no mcparticle, return\n");
698     return -1;
699   }
700
701   if ( abs(mcpart->GetPdgCode()) != AliHFEmcQA::kElectronPDG ) return AliHFEmcQA::kMisID;
702
703   Int_t origin = -1;
704   Bool_t isFinalOpenCharm = kFALSE;
705
706   Int_t iLabel = mcpart->GetFirstMother();
707   if (iLabel<0){
708     AliDebug(1, "Stack label is negative, return\n");
709     return -1;
710   }
711
712   AliMCParticle *mctrack = NULL;
713   Int_t tmpMomLabel=0;
714   if(!(mctrack = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(TMath::Abs(iLabel))))) return -1; 
715   TParticle *partMother = mctrack->Particle();
716   TParticle *partMotherCopy = mctrack->Particle();
717   Int_t maPdgcode = partMother->GetPdgCode();
718
719   // if the mother is charmed hadron  
720   if ( (int(abs(maPdgcode)/100.)%10) == AliHFEmcQA::kCharm || (int(abs(maPdgcode)/1000.)%10) == AliHFEmcQA::kCharm ) {
721
722     for (Int_t i=0; i<fNparents; i++){
723         if (abs(maPdgcode)==fParentSelect[0][i]){
724           isFinalOpenCharm = kTRUE;
725         }
726     }
727     if (!isFinalOpenCharm) return -1;
728
729     // iterate until you find B hadron as a mother or become top ancester 
730     for (Int_t i=1; i<fgkMaxIter; i++){
731
732         Int_t jLabel = partMother->GetFirstMother();
733         if (jLabel == -1){
734           origin = AliHFEmcQA::kDirectCharm;
735           return origin;
736         }
737         if (jLabel < 0){ // safety protection
738           AliDebug(1, "Stack label is negative, return\n");
739           return -1;
740         }
741
742         // if there is an ancester
743         if(!(mctrack = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(TMath::Abs(jLabel))))) return -1; 
744         TParticle* grandMa = mctrack->Particle();
745         Int_t grandMaPDG = grandMa->GetPdgCode();
746
747         for (Int_t j=0; j<fNparents; j++){
748           if (abs(grandMaPDG)==fParentSelect[1][j]){
749             origin = AliHFEmcQA::kBeautyCharm;
750             return origin;
751           }
752         }
753
754         partMother = grandMa;
755     } // end of iteration 
756   } // end of if
757   else if ( (int(abs(maPdgcode)/100.)%10) == AliHFEmcQA::kBeauty || (int(abs(maPdgcode)/1000.)%10) == AliHFEmcQA::kBeauty ) {
758     for (Int_t i=0; i<fNparents; i++){
759         if (abs(maPdgcode)==fParentSelect[1][i]){
760           origin = AliHFEmcQA::kDirectBeauty;
761           return origin;
762         }
763     }
764   } // end of if
765   else if ( abs(maPdgcode) == 22 ) { //conversion
766
767     tmpMomLabel = partMotherCopy->GetFirstMother();
768     if(!(mctrack = dynamic_cast<AliMCParticle *>(fMCEvent->GetTrack(TMath::Abs(tmpMomLabel))))) return -1;
769     partMother = mctrack->Particle();
770     maPdgcode = partMother->GetPdgCode();
771     if ( abs(maPdgcode) == 111 ) {
772       origin = AliHFEmcQA::kGammaPi0;
773       return origin;
774     } 
775     else if ( abs(maPdgcode) == 221 ) {
776       origin = AliHFEmcQA::kGammaEta;
777       return origin;
778     } 
779     else if ( abs(maPdgcode) == 223 ) {
780       origin = AliHFEmcQA::kGammaOmega;
781       return origin;
782     } 
783     else if ( abs(maPdgcode) == 333 ) {
784       origin = AliHFEmcQA::kGammaPhi;
785       return origin;
786     }
787     else if ( abs(maPdgcode) == 331 ) {
788       origin = AliHFEmcQA::kGammaEtaPrime;
789       return origin; 
790     }
791     else if ( abs(maPdgcode) == 113 ) {
792       origin = AliHFEmcQA::kGammaRho0;
793       return origin;
794     }
795     else origin = AliHFEmcQA::kElse;
796     //origin = kGamma; // finer category above
797     return origin;
798
799   } // end of if
800   else if ( abs(maPdgcode) == 111 ) {
801     origin = AliHFEmcQA::kPi0;
802     return origin;
803   } // end of if
804   else if ( abs(maPdgcode) == 221 ) {
805     origin = AliHFEmcQA::kEta;
806     return origin;
807   } // end of if
808   else if ( abs(maPdgcode) == 223 ) {
809     origin = AliHFEmcQA::kOmega;
810     return origin;
811   } // end of if
812   else if ( abs(maPdgcode) == 333 ) {
813     origin = AliHFEmcQA::kPhi;
814     return origin;
815   } // end of if
816   else if ( abs(maPdgcode) == 331 ) {
817     origin = AliHFEmcQA::kEtaPrime;
818     return origin;
819   } // end of if
820   else if ( abs(maPdgcode) == 113 ) {
821     origin = AliHFEmcQA::kRho0;
822     return origin;
823   } // end of if
824   else{ 
825     origin = AliHFEmcQA::kElse;
826   }
827   return origin;
828 }
829
830 //______________________________________________________
831 Bool_t AliHFEdebugTreeTask::CheckITSstatus( const AliESDtrack * const esdtrack, Int_t layer) const {
832   //
833   // Check whether ITS area is dead
834   //
835   Int_t itsStatus = 0;
836   Int_t det;
837   Float_t xloc, zloc;
838   esdtrack->GetITSModuleIndexInfo(layer, det, itsStatus, xloc, zloc);
839   Bool_t status;
840   switch(itsStatus){
841     case 2: status = kFALSE; break;
842     case 3: status = kFALSE; break;
843     case 7: status = kFALSE; break;
844     default: status = kTRUE;
845   }
846   return status;
847 }
848