1 // runEMCalJetAnalysis.C
2 // =====================
3 // This macro can be used to run a jet analysis within the EMCal Jet Framework.
6 // -> Analyze ESDs from the pA pilot run on the AliEn grid with your task in AnaClass.cxx/.h
7 // dataType = "ESD", useGrid = kTRUE, pattern = "*ESDs/pass2/*ESDs.root", addCXXs = "AnaClass.cxx",
8 // addHs = "AnaClass.h", gridDir = "/alice/data/2012/LHC12g", gridMode = "full", runNumbers = "188359 188362"
10 // -> Analyze AODs (up to 96 files) locally given in files_aod.txt
11 // dataType = "AOD", useGrid = kFALSE, numLocalFiles = 96
15 // If you run on the grid, you can monitor the jobs with alimonitor.cern.ch. When enough of them are in DONE state,
16 // you have to merge the output. This can be done automatically, if you just change the gridMode to "terminate" and
17 // give the EXACT name of the task whose output should be merged in uniqueName.
20 // Authors: R. Haake, S. Aiola
25 AliAnalysisGrid* CreateAlienHandler(const char* uniqueName, const char* gridDir, const char* gridMode, const char* runNumbers,
26 const char* pattern, TString additionalCode, TString additionalHeaders, Int_t maxFilesPerWorker,
27 Int_t workerTTL, Bool_t isMC);
29 //______________________________________________________________________________
30 void runEMCalJetAnalysis(
31 Bool_t useGrid = kTRUE, // local or grid
32 const char* gridMode = "test", // set the grid run mode (can be "full", "test", "offline", "submit" or "terminate")
33 const char* dataType = "AOD", // set the analysis type, AOD, ESD or sESD
34 const char* pattern = "*ESDs/pass2/AOD145/*AOD.root", // file pattern (here one can specify subdirs like passX etc.) (used on grid)
35 const char* gridDir = "/alice/data/2011/LHC11h_2", // dir on alien, where the files live (used on grid)
36 const char* runNumbers = "167903 167915", // considered run numbers (used on grid)
37 UInt_t numLocalFiles = 50, // number of files analyzed locally
38 const char* runPeriod = "LHC11h", // set the run period (used on grid)
39 const char* uniqueName = "EMCalJF_LEGOTrainTest", // sets base string for the name of the task on the grid
40 UInt_t pSel = AliVEvent::kAny, // used event selection for every task except for the analysis tasks
41 Bool_t useTender = kFALSE, // trigger, if tender task should be used
42 Bool_t isMC = kFALSE, // trigger, if MC handler should be used
44 // Here you have to specify additional code files you want to use but that are not in aliroot
45 const char* addCXXs = "",
46 const char* addHs = "",
48 // These two settings depend on the dataset and your quotas on the AliEN services
49 Int_t maxFilesPerWorker = 4,
50 Int_t workerTTL = 7200
55 // Some pre-settings and constants
56 enum AlgoType {kKT, kANTIKT};
57 enum JetType {kFULLJETS, kCHARGEDJETS, kNEUTRALJETS};
58 gSystem->SetFPEMask();
59 gSystem->Setenv("ETRAIN_ROOT", ".");
60 gSystem->Setenv("ETRAIN_PERIOD", runPeriod);
61 // change this objects to strings
62 TString usedData(dataType);
63 TString additionalCXXs(addCXXs);
64 TString additionalHs(addHs);
65 cout << dataType << " analysis chosen" << endl;
68 cout << "-- using AliEn grid.\n";
69 if (usedData == "sESD")
71 cout << "Skimmed ESD analysis not available on the grid!" << endl;
76 cout << "-- using local analysis.\n";
79 // Load necessary libraries
82 // Create analysis manager
83 AliAnalysisManager* mgr = new AliAnalysisManager(uniqueName);
85 // Check type of input and create handler for it
86 TString localFiles("-1");
89 localFiles = "files_aod.txt";
90 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddAODHandler.C");
91 AliAODInputHandler* aodH = AddAODHandler();
93 else if((usedData == "ESD") || (usedData == "sESD"))
95 if (usedData == "ESD")
96 localFiles = "files_esd.txt";
98 localFiles = "files_sesd.txt";
100 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddESDHandler.C");
101 AliESDInputHandler* esdH = AddESDHandler();
105 cout << "Data type not recognized! You have to specify ESD, AOD, or sESD!\n";
109 cout << "Using " << localFiles.Data() << " as input file list.\n";
111 // Create MC handler, if MC is demanded
112 if (isMC && (usedData != "AOD"))
114 AliMCEventHandler* mcH = new AliMCEventHandler();
115 mcH->SetPreReadMode(AliMCEventHandler::kLmPreRead);
116 mcH->SetReadTR(kTRUE);
117 mgr->SetMCtruthEventHandler(mcH);
120 // ################# Now: Add some basic tasks
122 // Physics selection task
123 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalPhysicsSelection.C");
124 AliPhysicsSelectionTask *physSelTask = AddTaskEmcalPhysicsSelection(kTRUE, kTRUE, pSel, 5, 5, 10, kTRUE, -1, -1, -1, -1);
128 cout << "no physSelTask";
133 if (usedData == "ESD") {
134 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
135 AliCentralitySelectionTask *centralityTask = AddTaskCentrality(kTRUE);
138 // Compatibility task, only needed for skimmed ESD
139 if (usedData == "sESD") {
140 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalCompat.C");
141 AliEmcalCompatTask *comptask = AddTaskEmcalCompat();
145 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalSetup.C");
146 AliEmcalSetupTask *setupTask = AddTaskEmcalSetup();
147 setupTask->SetGeoPath("$ALICE_ROOT/OADB/EMCAL");
152 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEMCALTender.C");
153 AliAnalysisTaskSE *tender = AddTaskEMCALTender(runPeriod, kTRUE, kTRUE, kTRUE, kTRUE, kTRUE, kFALSE, kTRUE, kTRUE, kTRUE,
154 AliEMCALRecoUtils::kBeamTestCorrected,kTRUE,0.1,0.05,AliEMCALRecParam::kClusterizerv2,
155 kFALSE,kFALSE,-1,1e6,1e6);
156 if (usedData != "AOD" && !useGrid) {
157 AliTender *alitender = dynamic_cast<AliTender*>(tender);
158 alitender->SetDefaultCDBStorage("local://$ALICE_ROOT/OCDB");
162 // Names of the different objects passed around; these are the default names; added here mostly for documentation purposes
163 // rhoName is only set if the background subtraction is switched on (doBkg)
164 TString tracksName = "PicoTracks";
165 TString clustersName = "CaloClusters";
166 TString clustersCorrName = "CaloClustersCorr";
167 TString rhoName = "";
169 // ################# Now: Call jet preparation macro (picotracks, hadronic corrected caloclusters, ...)
170 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskJetPreparation.C");
171 AddTaskJetPreparation(runPeriod, tracksName, "MCParticlesSelected", clustersName, clustersCorrName);
173 // ################# Now: Add jet finders+analyzers
174 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskEmcalJet.C");
175 AliEmcalJetTask* jetFinderTask = AddTaskEmcalJet(tracksName, clustersCorrName, kANTIKT, 0.2, kCHARGEDJETS, 0.150, 0.300);
179 AliEmcalJetTask* jetFinderTask = AddTaskEmcalJet(tracksName, clustersCorrName, kKT, 0.2, kCHARGEDJETS, 0.150, 0.300);
181 TString kTpcKtJetsName(Form("Jet_KTChargedR020_%s_pT0150_%s_ET0300_pt_scheme",tracksName.Data(),clustersCorrName.Data()));
182 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskRho.C");
183 rhotask = (AliAnalysisTaskRho*) AddTaskRho(kTpcKtJetsName, tracksName, clustersCorrName, rhoName, 0.2, "TPC", 0.01, 0, 0, 2, kTRUE);
184 //rhotask__->SetScaleFunction(sfunc);
185 //rhotask->SelectCollisionCandidates(kPhysSel);
186 rhotask->SetHistoBins(100,0,250);
188 // Here you can put in your AddTaskMacro for your task
189 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskEmcalJetSample.C");
190 AliAnalysisTaskEmcalJetSample* anaTask = 0;
191 AddTaskEmcalJetSample(tracksName, clustersCorrName, jetFinderTask->GetName(), rhoName, 4);
193 // Set the physics selection for all given tasks
194 TObjArray *toptasks = mgr->GetTasks();
195 for (Int_t i=0; i<toptasks->GetEntries(); ++i)
197 AliAnalysisTaskSE *task = dynamic_cast<AliAnalysisTaskSE*>(toptasks->At(i));
200 if (task->InheritsFrom("AliPhysicsSelectionTask"))
202 ::Info("setPSel", "Set physics selection for %s (%s)", task->GetName(), task->ClassName());
203 task->SelectCollisionCandidates(pSel);
206 mgr->SetUseProgressBar(1, 25);
208 if (!mgr->InitAnalysis())
213 { // GRID CALCULATION
215 AliAnalysisGrid *plugin = CreateAlienHandler(uniqueName, gridDir, gridMode, runNumbers, pattern, additionalCXXs, additionalHs, maxFilesPerWorker, workerTTL, isMC);
216 mgr->SetGridHandler(plugin);
219 cout << "Starting GRID Analysis...";
220 mgr->SetDebugLevel(0);
221 mgr->StartAnalysis("grid");
224 { // LOCAL CALCULATION
227 if (usedData == "AOD")
229 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/CreateAODChain.C");
230 chain = CreateAODChain(localFiles.Data(), numLocalFiles);
233 { // ESD or skimmed ESD
234 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/CreateESDChain.C");
235 chain = CreateESDChain(localFiles.Data(), numLocalFiles);
239 cout << "Starting LOCAL Analysis...";
240 mgr->SetDebugLevel(2);
241 mgr->StartAnalysis("local", chain);
245 //______________________________________________________________________________
248 // Load common libraries (better too many than too few)
249 gSystem->Load("libTree");
250 gSystem->Load("libVMC");
251 gSystem->Load("libGeom");
252 gSystem->Load("libGui");
253 gSystem->Load("libXMLParser");
254 gSystem->Load("libMinuit");
255 gSystem->Load("libMinuit2");
256 gSystem->Load("libProof");
257 gSystem->Load("libPhysics");
258 gSystem->Load("libSTEERBase");
259 gSystem->Load("libESD");
260 gSystem->Load("libAOD");
261 gSystem->Load("libOADB");
262 gSystem->Load("libANALYSIS");
263 gSystem->Load("libCDB");
264 gSystem->Load("libRAWDatabase");
265 gSystem->Load("libSTEER");
266 gSystem->Load("libEVGEN");
267 gSystem->Load("libANALYSISalice");
268 gSystem->Load("libCORRFW");
269 gSystem->Load("libTOFbase");
270 //gSystem->Load("libTOFrec");
271 gSystem->Load("libRAWDatabase.so");
272 gSystem->Load("libRAWDatarec.so");
273 gSystem->Load("libTPCbase.so");
274 gSystem->Load("libTPCrec.so");
275 gSystem->Load("libITSbase.so");
276 gSystem->Load("libITSrec.so");
277 gSystem->Load("libTRDbase.so");
278 gSystem->Load("libTENDER.so");
279 gSystem->Load("libSTAT.so");
280 gSystem->Load("libTRDrec.so");
281 gSystem->Load("libHMPIDbase.so");
282 gSystem->Load("libPWGPP.so");
283 gSystem->Load("libPWGHFbase");
284 gSystem->Load("libPWGDQdielectron");
285 gSystem->Load("libPWGHFhfe");
286 gSystem->Load("libEMCALUtils");
287 gSystem->Load("libPHOSUtils");
288 gSystem->Load("libPWGCaloTrackCorrBase");
289 gSystem->Load("libEMCALraw");
290 gSystem->Load("libEMCALbase");
291 gSystem->Load("libEMCALrec");
292 gSystem->Load("libTRDbase");
293 gSystem->Load("libVZERObase");
294 gSystem->Load("libVZEROrec");
295 gSystem->Load("libTENDER");
296 gSystem->Load("libTENDERSupplies");
297 gSystem->Load("libPWGTools");
298 gSystem->Load("libPWGEMCAL");
299 gSystem->Load("libESDfilter");
300 gSystem->Load("libPWGGAEMCALTasks");
301 gSystem->Load("libPWGCFCorrelationsBase");
302 gSystem->Load("libPWGCFCorrelationsDPhi");
304 //load CGAL, Fastjet and SISCone
305 gSystem->Load("libCGAL");
306 gSystem->Load("libfastjet");
307 //For FastJet 3.x use siscon*,fastjetplugins for 2.x use SISConePlugin
308 gSystem->Load("libSISConePlugin");
309 gSystem->Load("libCDFConesPlugin");
310 // gSystem->Load("libsiscone");
311 // gSystem->Load("libsiscone_spherical");
312 // gSystem->Load("libfastjetplugins");
313 gSystem->Load("libJETAN");
314 gSystem->Load("libFASTJETAN");
315 gSystem->Load("libPWGJEEMCALJetTasks");
319 gSystem->AddIncludePath("-Wno-deprecated");
320 gSystem->AddIncludePath("-I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/EMCAL");
321 gSystem->AddIncludePath("-I$ALICE_ROOT/PWGDQ/dielectron -I$ALICE_ROOT/PWGHF/hfe");
322 gSystem->AddIncludePath("-I$ALICE_ROOT/JETAN -I$ALICE_ROOT/JETAN/fastjet");
325 AliAnalysisGrid* CreateAlienHandler(const char* uniqueName, const char* gridDir, const char* gridMode, const char* runNumbers,
326 const char* pattern, TString additionalCode, TString additionalHeaders, Int_t maxFilesPerWorker,
327 Int_t workerTTL, Bool_t isMC)
330 TString tmpName(uniqueName);
332 // Only add current date and time when not in terminate mode! In this case the exact name has to be supplied by the user
333 if(strcmp(gridMode, "terminate"))
336 tmpName += currentTime.GetDate();
338 tmpName += currentTime.GetTime();
341 TString tmpAdditionalLibs("");
342 tmpAdditionalLibs = Form("libTree.so libVMC.so libGeom.so libGui.so libXMLParser.so libMinuit.so libMinuit2.so libProof.so libPhysics.so libSTEERBase.so libESD.so libAOD.so libOADB.so libANALYSIS.so libCDB.so libRAWDatabase.so libSTEER.so libANALYSISalice.so libCORRFW.so libTOFbase.so libRAWDatabase.so libRAWDatarec.so libTPCbase.so libTPCrec.so libITSbase.so libITSrec.so libTRDbase.so libTENDER.so libSTAT.so libTRDrec.so libHMPIDbase.so libPWGPP.so libPWGHFbase.so libPWGDQdielectron.so libPWGHFhfe.so libEMCALUtils.so libPHOSUtils.so libPWGCaloTrackCorrBase.so libEMCALraw.so libEMCALbase.so libEMCALrec.so libTRDbase.so libVZERObase.so libVZEROrec.so libTENDER.so libTENDERSupplies.so libESDfilter.so libPWGTools.so libPWGEMCAL.so libPWGGAEMCALTasks.so libPWGCFCorrelationsBase.so libPWGCFCorrelationsDPhi.so libCGAL.so libJETAN.so libfastjet.so libSISConePlugin.so libCDFConesPlugin.so libFASTJETAN.so libPWGJE.so libPWGmuon.so libPWGJEEMCALJetTasks.so %s %s",additionalCode.Data(),additionalHeaders.Data());
345 TString macroName("");
346 TString execName("");
348 macroName = Form("%s.C", tmpName.Data());
349 execName = Form("%s.sh", tmpName.Data());
350 jdlName = Form("%s.jdl", tmpName.Data());
352 AliAnalysisAlien *plugin = new AliAnalysisAlien();
353 plugin->SetOverwriteMode();
354 plugin->SetRunMode(gridMode);
356 // Here you can set the (Ali)ROOT version you want to use
357 plugin->SetAPIVersion("V1.1x");
358 plugin->SetROOTVersion("v5-34-08-6");
359 plugin->SetAliROOTVersion("vAN-20140525");
361 plugin->SetGridDataDir(gridDir); // e.g. "/alice/sim/LHC10a6"
362 plugin->SetDataPattern(pattern); //dir structure in run directory
364 plugin->SetRunPrefix("000");
366 plugin->AddRunList(runNumbers);
368 plugin->SetGridWorkingDir(Form("work/%s",tmpName.Data()));
369 plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
371 plugin->SetAnalysisSource(additionalCode.Data());
372 plugin->SetAdditionalLibs(tmpAdditionalLibs.Data());
373 plugin->AddExternalPackage("boost::v1_43_0");
374 plugin->AddExternalPackage("cgal::v3.6");
375 plugin->AddExternalPackage("fastjet::v2.4.2");
377 plugin->SetDefaultOutputs(kTRUE);
378 //plugin->SetMergeExcludes("");
379 plugin->SetAnalysisMacro(macroName.Data());
380 plugin->SetSplitMaxInputFileNumber(maxFilesPerWorker);
381 plugin->SetExecutable(execName.Data());
382 plugin->SetTTL(workerTTL);
383 plugin->SetInputFormat("xml-single");
384 plugin->SetJDLName(jdlName.Data());
386 plugin->SetSplitMode("se");