6 echo " ${0##*/} option=value [option=value]"
7 echo " at least inputList should be specified, or configFile containing it:"
8 echo " ${0##*/} inputList=file.list"
9 echo " options override config file (if any), e.g.:"
10 echo " ${0##*/} configFile=runQA.config inputList=file.list outputDirectory=%det"
14 if ! parseConfig $@; then
19 [[ -z $ALICE_ROOT ]] && echo "ALICE_ROOT not defined" && return 1
22 if [[ ${ocdbStorage} =~ ${ocdbregex} ]]; then
23 alien-token-init ${alienUserName}
24 #this is a hack! alien-token init seems not enough
25 #but the gclient_env script messes up the LD_LIBRARY_PATH
28 done < <(grep -v "LD_LIBRARY_PATH" /tmp/gclient_env_${UID})
39 #be paranoid and make some full paths
40 [[ ! -f ${inputList} ]] && echo "no input list: ${inputList}" && return 1
41 inputList=$(get_realpath ${inputList})
42 mkdir -p ${workingDirectory}
43 workingDirectory=$(workingDirectory=${workingDirectory%/}; cd ${workingDirectory%/*}; echo "${PWD}/${workingDirectory##*/}")
44 if [[ ! -d ${workingDirectory} ]]; then
45 echo "working dir $workingDirectory does not exist and cannot be created"
48 cd ${workingDirectory}
51 echo inputList=$inputList
52 echo outputDirectory=$outputDirectory
55 dateString=$(date +%Y-%m-%d-%H-%M)
56 echo "Start time QA process: $dateString"
59 mkdir -p $logDirectory
60 [[ ! -d $logDirectory ]] && echo "no log dir $logDirectory" && return 1
61 logFile="$logDirectory/${0##*/}.${dateString}.log"
63 [[ ! -f ${logFile} ]] && echo "cannot write logfile $logfile" && return 1
64 echo "logFile = $logFile"
67 lockFile=${logDirectory}/runQA.lock
68 [[ -f ${lockFile} ]] && echo "lock ${lockFile} exists!" | tee ${logFile} && return 1
70 [[ ! -f ${lockFile} ]] && echo "cannot lock $lockFile" | tee ${logFile} && return 1
74 ################################################################
76 for detectorScript in $ALICE_ROOT/PWGPP/QA/detectorQAscripts/*; do
78 echo "##############################################"
81 [[ ! ${detectorScript} =~ .*\.sh$ ]] && continue
82 detector=${detectorScript%.sh}
83 detector=${detector##*/}
86 if [[ "${excludeDetectors}" =~ ${detector} ]]; then
87 echo "${detector} is excluded in config, skipping..."
91 #if includeDetectors set, only process thoe detectors specified there
92 if [[ -n ${includeDetectors} && ! "${includeDetectors}" =~ ${detector} ]]; then
93 echo "${detector} not included in includeDetectors, skipping..."
97 logSummary=${logDirectory}/summary-${detector}-${dateString}.log
98 outputDir=$(substituteDetectorName ${detector} ${outputDirectory})
99 tmpDetectorRunDir=${workingDirectory}/tmpQAtmpRunDir${detector}-${dateString}
100 if ! mkdir -p ${tmpDetectorRunDir}; then
101 echo "cannot create the temp dir $tmpDetectorRunDir"
104 cd ${tmpDetectorRunDir}
106 tmpPrefix=${tmpDetectorRunDir}/${outputDir}
107 echo "running QA for ${detector}"
108 echo " outputDir=$outputDir"
109 echo " tmpPrefix=$tmpPrefix"
111 #unset the detector functions from previous iterations (detectors)
113 unset -f periodLevelQA
114 unset -f runLevelHighPtTreeQA
115 unset -f periodLevelHighPtTreeQA
116 source ${detectorScript}
118 #################################################################
119 #produce the QA and trending tree for each file (run)
120 unset arrOfTouchedProductions
121 declare -A arrOfTouchedProductions
122 while read qaFile; do
126 #first check if input file exists
127 [[ ! -f ${qaFile%\#*} ]] && echo "file ${qaFile%\#*} not accessible" && continue
129 if ! guessRunData ${qaFile}; then
130 echo "could not guess run data from ${qaFile}"
134 tmpProductionDir=${tmpPrefix}/${dataType}/${year}/${period}/${pass}
135 tmpRunDir=${tmpProductionDir}/000${runNumber}
136 mkdir -p ${tmpRunDir}
139 #by default we expect to have everything in the same archive
142 #maybe the input is not an archive, but a file
143 [[ "${qaFile}" =~ QAresults.root$ ]] && highPtTree=""
144 [[ "${qaFile}" =~ FilterEvents_Trees.root$ ]] && qaFile=""
146 #it is possible we get the highPt trees from somewhere else
147 #search the list of high pt trees for the proper run number
148 if [[ -n ${inputListHighPtTrees} ]]; then
149 highPtTree=$(egrep -m1 ${runNumber} ${inputListHighPtTrees})
150 echo "loaded the highPtTree ${highPtTree} from external file ${inputListHighPtTrees}"
154 echo highPtTree=$highPtTree
156 #what if we have a zip archive?
157 if [[ "$qaFile" =~ .*.zip$ ]]; then
158 if unzip -l ${qaFile} | egrep "QAresults.root" &>/dev/null; then
159 qaFile="${qaFile}#QAresults.root"
164 if [[ "$highPtTree" =~ .*.zip$ ]]; then
165 if unzip -l ${highPtTree} | egrep "FilterEvents_Trees.root" &>/dev/null; then
166 highPtTree="${highPtTree}#FilterEvents_Trees.root"
172 if [[ -n ${qaFile} && $(type -t runLevelQA) =~ "function" ]]; then
173 echo running ${detector} runLevelQA for run ${runNumber} from ${qaFile}
174 runLevelQA "${qaFile}" &> runLevelQA.log
175 #perform some default actions:
176 #if trending.root not created, create a default one
177 if [[ ! -f trending.root ]]; then
178 aliroot -b -q -l "$ALICE_ROOT/PWGPP/macros/simpleTrending.C(\"${qaFile}\",${runNumber},\"${detector}\",\"trending.root\",\"trending\",\"recreate\")" 2>&1 | tee -a runLevelQA.log
180 if [[ -f trending.root ]]; then
181 arrOfTouchedProductions[${tmpProductionDir}]=1
183 echo "trending.root not created"
186 #expert QA based on high pt trees
187 if [[ -n ${highPtTree} && $(type -t runLevelHighPtTreeQA) =~ "function" ]]; then
188 echo running ${detector} runLevelHighPtTreeQA for run ${runNumber} from ${highPtTree}
189 runLevelHighPtTreeQA "${highPtTree}" &> runLevelHighPtTreeQA.log
190 arrOfTouchedProductions[${tmpProductionDir}]=1
193 cd ${tmpDetectorRunDir}
197 #################################################################
198 #cache which productions were (re)done
199 echo "list of processed productions:"
200 echo " ${!arrOfTouchedProductions[@]}"
203 #################################################################
204 #(re)do the merging/trending
205 for tmpProductionDir in ${!arrOfTouchedProductions[@]}; do
206 cd ${tmpProductionDir}
208 echo "running period level stuff in ${tmpProductionDir}"
211 productionDir=${outputDir}/${tmpProductionDir#${tmpPrefix}}
212 echo productionDir=${outputDir}/${tmpProductionDir#${tmpPrefix}}
214 mkdir -p ${productionDir}
215 if [[ ! -d ${productionDir} ]]; then
216 echo "cannot make productionDir $productionDir" && continue
219 #move runs to final destination
220 for dir in ${tmpProductionDir}/000*; do
222 oldRunDir=${outputDir}/${dir#${tmpPrefix}}
223 if ! guessRunData "${dir}/dummyName"; then
224 echo "could not guess run data from ${dir}"
228 #before moving - VALIDATE!!!
229 if ! validate ${dir}; then
233 if [[ -d ${oldRunDir} ]]; then
234 echo "removing old ${oldRunDir}"
237 echo "moving new ${runNumber} to ${productionDir}"
238 mv -f ${dir} ${productionDir}
241 #go to a temp dir to do the period level stuff in a completely clean dir
242 tmpPeriodLevelQAdir="${tmpProductionDir}/periodLevelQA"
244 echo tmpPeriodLevelQAdir="${tmpProductionDir}/periodLevelQA"
245 if ! mkdir -p ${tmpPeriodLevelQAdir}; then continue; fi
246 cd ${tmpPeriodLevelQAdir}
248 #link the final list of per-run dirs here, just the dirs
249 #to have a clean working directory
251 declare -a linkedStuff
252 for x in ${productionDir}/000*; do [[ -d $x ]] && ln -s $x && linkedStuff+=(${x##*/}); done
254 #merge trending files if any
255 if /bin/ls 000*/trending.root &>/dev/null; then
256 hadd trending.root 000*/trending.root &> periodLevelQA.log
259 #run the period level trending/QA
260 if [[ -f "trending.root" && $(type -t periodLevelQA) =~ "function" ]]; then
261 echo running ${detector} periodLevelQA for production ${period}/${pass}
262 periodLevelQA trending.root &>> periodLevelQA.log
264 echo "WARNING: not running ${detector} periodLevelQA for production ${period}/${pass}, no trending.root"
267 if ! validate ${PWD}; then continue; fi
269 #here we are validated so move the produced QA to the final place
270 #clean up linked stuff first
271 [[ -n ${linkedStuff[@]} ]] && rm ${linkedStuff[@]}
272 #some of the output could be a directory, so handle that
273 #TODO: maybe use rsync?
274 for x in ${tmpPeriodLevelQAdir}/*; do
275 if [[ -d ${x} ]]; then
276 echo "removing ${productionDir}/${x##*/}"
277 rm -rf ${productionDir}/${x##*/}
278 echo "moving ${x} to ${productionDir}"
279 mv ${x} ${productionDir}
281 if [[ -f ${x} ]]; then
282 echo "moving ${x} to ${productionDir}"
283 mv -f ${x} ${productionDir}
288 rm -rf ${tmpPeriodLevelQAdir}
292 cd ${workingDirectory}
294 if [[ -z ${planB} ]]; then
296 echo removing ${tmpDetectorRunDir}
297 rm -rf ${tmpDetectorRunDir}
301 done #end of detector loop
309 #in case of emergency
310 if [[ -n ${MAILTO} ]]; then
312 echo "trouble detected, sending email to ${MAILTO}"
314 cat ${logSummary} | mail -s "qa in need of assistance" ${MAILTO}
320 summarizeLogs ${1} >> ${logSummary}
322 if [[ ${logStatus} -ne 0 ]]; then
323 echo "WARNING not validated: ${1}"
333 [[ ! -d ${dir} ]] && dir=${PWD}
335 #print a summary of logs
344 for log in ${dir}/${logFiles[*]}; do
345 finallog=${PWD%/}/${log}
346 [[ ! -f ${log} ]] && continue
347 errorSummary=$(validateLog ${log})
349 [[ validationStatus -ne 0 ]] && logstatus=1
350 if [[ ${validationStatus} -eq 0 ]]; then
351 #in pretend mode randomly report an error in rec.log some cases
352 if [[ -n ${pretend} && "${log}" == "rec.log" ]]; then
353 [[ $(( ${RANDOM}%2 )) -ge 1 ]] && echo "${finallog} BAD random error" || echo "${finallog} OK"
355 echo "${finallog} OK"
357 elif [[ ${validationStatus} -eq 1 ]]; then
358 echo "${finallog} BAD ${errorSummary}"
359 elif [[ ${validationStatus} -eq 2 ]]; then
360 echo "${finallog} OK MWAH ${errorSummary}"
368 gdb --batch --quiet -ex "bt" -ex "quit" aliroot ${x} > stacktrace_${x//\//_}.log
369 done < <(/bin/ls ${PWD}/*/core 2>/dev/null; /bin/ls ${PWD}/core 2>/dev/null)
380 'error while loading shared libraries'
383 'Thread [0-9]* (Thread'
386 '\.C.*error:.*\.h: No such file'
388 'Interpreter error recovered'
396 local errorSummary=""
397 local warningSummary=""
399 for ((i=0; i<${#errorConditions[@]};i++)); do
400 local tmp=$(grep -m1 -e "${errorConditions[${i}]}" ${log})
401 [[ -n ${tmp} ]] && tmp+=" : "
405 for ((i=0; i<${#warningConditions[@]};i++)); do
406 local tmp=$(grep -m1 -e "${warningConditions[${i}]}" ${log})
407 [[ -n ${tmp} ]] && tmp+=" : "
408 warningSummary+=${tmp}
411 if [[ -n ${errorSummary} ]]; then
412 echo "${errorSummary}"
416 if [[ -n ${warningSummary} ]]; then
417 echo "${warningSummary}"
428 #where to search for qa files
431 workingDirectory="${PWD}"
432 #where to place the final qa plots
433 #outputDirectory="/afs/cern.ch/work/a/aliqa%det/www/"
434 outputDirectory="${workingDirectory}/%DET"
435 #filter out detector option
436 excludeDetectors="EXAMPLE"
438 logDirectory=${workingDirectory}/logs
440 #ocdbStorage="raw://"
442 #MAILTO="fbellini@cern.ch"
444 #first, check if the config file is configured
445 #is yes - source it so that other options can override it
448 if [[ ${opt} =~ configFile=.* ]]; then
450 [[ ! -f ${configFile} ]] && echo "configFile ${configFile} not found, exiting..." && return 1
451 source "${configFile}"
456 #then, parse the options as they override the options from file
457 while [[ -n ${1} ]]; do
459 if [[ ${var} =~ .*=.* ]]; then
462 echo "badly formatted option ${var}, should be: option=value, stopping..."
471 #guess the period from the path, pick the rightmost one
476 legoTrainRunNumber=""
479 local shortRunNumber=""
481 declare -a path=( $1 )
482 local dirDepth=$(( ${#path[*]}-1 ))
484 for ((x=${dirDepth};x>=0;x--)); do
486 [[ $((x-1)) -ge 0 ]] && local fieldPrev=${path[$((x-1))]}
487 local field=${path[${x}]}
488 local fieldNext=${path[$((x+1))]}
490 [[ ${field} =~ ^[0-9]*$ && ${fieldNext} =~ (.*\.zip$|.*\.root$) ]] && legoTrainRunNumber=${field}
491 [[ -n ${legoTrainRunNumber} && -z ${pass} ]] && pass=${fieldPrev}
492 [[ ${field} =~ ^LHC[0-9][0-9][a-z].*$ ]] && period=${field%_*}
493 [[ ${field} =~ ^000[0-9][0-9][0-9][0-9][0-9][0-9]$ ]] && runNumber=${field#000}
494 [[ ${field} =~ ^[0-9][0-9][0-9][0-9][0-9][0-9]$ ]] && shortRunNumber=${field}
495 [[ ${field} =~ ^20[0-9][0-9]$ ]] && year=${field}
496 [[ ${field} =~ ^(^sim$|^data$) ]] && dataType=${field}
499 [[ -z ${legoTrainRunNumber} ]] && pass=${path[$((dirDepth-1))]}
500 [[ "${dataType}" =~ ^sim$ ]] && pass="passMC" && runNumber=${shortRunNumber}
502 #if [[ -z ${dataType} || -z ${year} || -z ${period} || -z ${runNumber}} || -z ${pass} ]];
503 if [[ -z ${runNumber}} ]];
513 substituteDetectorName()
517 [[ ${dir} =~ \%det ]] && det=${det,,} && echo ${dir/\%det/${det}}
518 [[ ${dir} =~ \%DET ]] && det=${det} && echo ${dir/\%DET/${det}}
526 if cd "$(echo "${1%/*}")" &>/dev/null
528 # file *may* not be local
529 # exception is ./file.ext
530 # try 'cd .; cd -;' *works!*
534 # file *must* be local
538 # file *cannot* exist
541 # reassemble realpath
542 echo "$tmppwd"/"${1##*/}"