1 #include "AliTRDTKDInterpolator.h"
3 #include "TClonesArray.h"
4 #include "TLinearFitter.h"
13 ClassImp(AliTRDTKDInterpolator)
15 //_________________________________________________________________
16 AliTRDTKDInterpolator::AliTRDTKDInterpolator() :
22 fUseHelperNodes(kFALSE),
24 fPDFMode(kInterpolation)
26 // default constructor
29 //_________________________________________________________________
30 AliTRDTKDInterpolator::AliTRDTKDInterpolator(Int_t npoints, Int_t ndim, UInt_t bsize, Float_t **data) :
31 TKDTreeIF(npoints, ndim, bsize, data),
34 fLambda(1 + ndim + (ndim*(ndim+1)>>1)),
36 fUseHelperNodes(kFALSE),
38 fPDFMode(kInterpolation)
42 //_________________________________________________________________
43 AliTRDTKDInterpolator::~AliTRDTKDInterpolator()
51 //_________________________________________________________________
52 AliTRDTKDInterpolator::AliTRDTKDInterpolator(const AliTRDTKDInterpolator &ref):
54 fNDataNodes(ref.fNDataNodes),
57 fNPointsI(ref.fNPointsI),
58 fUseHelperNodes(ref.fUseHelperNodes),
59 fUseWeights(ref.fUseWeights),
60 fPDFMode(ref.fPDFMode)
66 //____________________________________________________________
68 AliTRDTKDInterpolator &AliTRDTKDInterpolator::operator=(const AliTRDTKDInterpolator &ref){
70 // Assignment operator
72 if(this == &ref) return *this;
75 TObject::operator=(ref);
82 //_________________________________________________________________
83 Bool_t AliTRDTKDInterpolator::Build()
86 if(!fBoundaries) MakeBoundaries();
88 // allocate interpolation nodes
89 fNDataNodes = fNPoints/fBucketSize + ((fNPoints%fBucketSize)?1:0);
92 Warning("AliTRDTKDInterpolator::Build()", "Data already allocated.");
95 fNodes = new TClonesArray("AliTRDTKDInterpolator::AliTRDTKDNodeInfo", fNDataNodes);
98 for(int in=0; in<fNDataNodes; in++) new ((*fNodes)[in]) AliTRDTKDNodeInfo(fNDim);
100 // Set Interpolator nodes
102 for(int inode=0, tnode = fNNodes; inode<fNDataNodes-1; inode++, tnode++){
103 AliTRDTKDNodeInfo *node =GetNodeInfo(inode);
104 memcpy(node->fBounds,GetBoundary(tnode),2*fNDim*sizeof(Float_t));
105 node->fVal[0] = Float_t(fBucketSize)/fNPoints;
106 for(int idim=0; idim<fNDim; idim++) node->fVal[0] /= (node->fBounds[2*idim+1] - node->fBounds[2*idim]);
107 node->fVal[1] = node->fVal[0]/TMath::Sqrt(float(fBucketSize));
109 Int_t *indexPoints = GetPointsIndexes(tnode);
110 // loop points in this terminal node
111 for(int idim=0; idim<fNDim; idim++){
112 node->fData[idim] = 0.;
113 for(int ip = 0; ip<fBucketSize; ip++) node->fData[idim] += fData[idim][indexPoints[ip]];
114 node->fData[idim] /= fBucketSize;
118 // Analyze last (incomplete) terminal node
120 Int_t counts = fNPoints%fBucketSize;
121 counts = counts ? counts : fBucketSize;
122 Int_t inode = fNDataNodes - 1, tnode = inode + fNNodes;
123 AliTRDTKDNodeInfo *ftnode = GetNodeInfo(inode);
124 ftnode->fVal[0] = Float_t(counts)/fNPoints;
125 memcpy(ftnode->fBounds,GetBoundary(tnode),2*fNDim*sizeof(Float_t));
127 for(int idim=0; idim<fNDim; idim++){
128 Float_t dx = ftnode->fBounds[2*idim+1]-ftnode->fBounds[2*idim];
130 Warning("AliTRDTKDInterpolator::Build()", "Terminal bucket index[%d] too narrow on the %d dimension.", inode, idim);
133 ftnode->fVal[0] /= (ftnode->fBounds[2*idim+1] - ftnode->fBounds[2*idim]);
135 ftnode->fVal[1] = ftnode->fVal[0]/TMath::Sqrt(float(counts));
137 // loop points in this terminal node
138 Int_t *indexPoints = GetPointsIndexes(tnode);
139 for(int idim=0; idim<fNDim; idim++){
140 ftnode->fData[idim] = 0.;
141 for(int ip = 0; ip<counts; ip++) ftnode->fData[idim] += fData[idim][indexPoints[ip]];
142 ftnode->fData[idim] /= counts;
145 delete [] fBoundaries;
148 if(fUseHelperNodes){BuildBoundaryNodes();}
150 if(fNPointsI>GetNTNodes()){fNPointsI=GetNTNodes();}
152 BuildInterpolation();
158 //_________________________________________________________________
159 Bool_t AliTRDTKDInterpolator::Eval(const Double_t *point, Double_t &result, Double_t &error)
161 AliDebug(3,Form("Eval PDF Mode %d",fPDFMode));
162 if((AliLog::GetDebugLevel("",IsA()->GetName()))>0){
164 for(int idim=0; idim<fNDim; idim++) printf("%f ", point[idim]);
168 Float_t pointF[fNDim]; // local Float_t conversion for "point"
169 for(int idim=0; idim<fNDim; idim++) pointF[idim] = (Float_t)point[idim];
170 Int_t nodeIndex = GetNodeIndex(pointF);
172 AliError("Can not retrieve node for data point");
177 AliTRDTKDNodeInfo *node =GetNodeInfo(nodeIndex);
179 if((AliLog::GetDebugLevel("",IsA()->GetName()))>0){
180 printf("Node Info: \n");
184 return node->CookPDF(point, result, error,fPDFMode);
187 //__________________________________________________________________
188 void AliTRDTKDInterpolator::Print(const Option_t */*opt*/) const
190 for(Int_t i=GetNTNodes(); i--;){
191 printf("Node %d of %d: \n",i,GetNTNodes());
192 GetNodeInfo(i)->Print();
197 //__________________________________________________________________
198 Int_t AliTRDTKDInterpolator::GetNodeIndex(const Float_t *p)
200 Int_t inode=FindNode(p)-fNDataNodes+1;
201 if(GetNodeInfo(inode)->Has(p)){
202 AliDebug(2,Form("Find Node %d",inode));
206 // Search extra nodes
208 for(inode=fNDataNodes;inode<GetNTNodes();inode++){
209 if(GetNodeInfo(inode)->Has(p)){
210 AliDebug(2,Form("Find Extra Node %d",inode));
215 // Search for nearest neighbor
217 Float_t closestdist=10000;
219 for(Int_t ii=0;ii<GetNTNodes();ii++){
220 AliTRDTKDNodeInfo *node=GetNodeInfo(ii);
222 for(Int_t idim=0;idim<fNDim;idim++){
223 dist+=TMath::Power((node->fData[idim]-p[idim]),2);
225 dist=TMath::Sqrt(dist);
226 if(dist<closestdist){closestdist=dist;inode=ii;}
228 AliDebug(2,Form("Find Nearest Neighbor Node %d",inode));
232 //_________________________________________________________________
233 AliTRDTKDInterpolator::AliTRDTKDNodeInfo* AliTRDTKDInterpolator::GetNodeInfo(Int_t inode) const
235 if(!fNodes || inode >= GetNTNodes()) return NULL;
236 return (AliTRDTKDNodeInfo*)(*fNodes)[inode];
239 //_________________________________________________________________
240 Int_t AliTRDTKDInterpolator::GetNTNodes() const
242 return fNodes?fNodes->GetEntriesFast():0;
245 //_________________________________________________________________
246 Bool_t AliTRDTKDInterpolator::GetRange(Int_t idim,Float_t range[2]) const
248 if(!fNodes) return kFALSE;
249 if(idim<0 || idim>=fNDim){
250 range[0]=0.; range[1]=0.;
253 range[0]=1.e10; range[1]=-1.e10;
254 for(Int_t in=GetNTNodes(); in--; ){
255 AliTRDTKDNodeInfo *node = GetNodeInfo(in);
257 if(node->fBounds[2*idim]<range[0]) range[0] = node->fBounds[2*idim];
258 if(node->fBounds[2*idim+1]>range[1]) range[1] = node->fBounds[2*idim+1];
264 //_________________________________________________________________
265 TH2Poly *AliTRDTKDInterpolator::Projection(Int_t xdim,Int_t ydim)
267 Float_t rangex[2],rangey[2];
268 GetRange(xdim,rangex);
269 GetRange(ydim,rangey);
271 TH2Poly* h2 = new TH2Poly("hTKDnodes","hTKDnodes", rangex[0],rangex[1],rangey[0],rangey[1]);
272 h2->GetXaxis()->SetTitle(Form("Q_{%d}", xdim));
273 h2->GetYaxis()->SetTitle(Form("Q_{%d}", ydim));
275 for(Int_t inode=0;inode<GetNTNodes();inode++){
277 AliTRDTKDNodeInfo* node=GetNodeInfo(inode);
278 h2->AddBin(node->fBounds[2*xdim],node->fBounds[2*ydim],node->fBounds[2*xdim+1],node->fBounds[2*ydim+1]);
279 h2->SetBinContent(inode+1, node->fVal[0]);
284 //_________________________________________________________________
285 void AliTRDTKDInterpolator::BuildInterpolation()
287 AliInfo("Build Interpolation");
289 // Calculate Interpolation
291 Double_t buffer[fLambda];
293 Float_t **refPoints = new Float_t*[fNDim];
294 for(int id=0; id<fNDim; id++){
295 refPoints[id] = new Float_t[GetNTNodes()];
296 for(int in=0; in<GetNTNodes(); in++) refPoints[id][in] = GetNodeInfo(in)->fData[id];
298 TKDTreeIF *KDhelper = new TKDTreeIF(GetNTNodes(), fNDim, 30, refPoints);
300 KDhelper->MakeBoundariesExact();
302 Float_t dist[fNPointsI];
303 Int_t ind[fNPointsI];
305 TLinearFitter fitter(fLambda, Form("hyp%d", fLambda-1));
307 Int_t nodeIndex(0); Float_t param[6], *pp(NULL);
308 nodeIndex=GetNTNodes(); pp=¶m[0];
311 fitter.ClearPoints();
313 AliTRDTKDNodeInfo *node = GetNodeInfo(nodeIndex);
314 // find nearest neighbors
315 KDhelper->FindNearestNeighbors(node->fData,fNPointsI, &ind[0], &dist[0]);
317 for(int in=0;in<fNPointsI;in++){
318 AliTRDTKDNodeInfo *nnode = GetNodeInfo(ind[in]);
320 Float_t w=1; //weight
321 // calculate tri-cubic weighting function
323 Float_t d = dist[in]/dist[fNPointsI-1];
324 Float_t w0 = (1. - d*d*d);
326 if(w<1.e-30) continue;
329 for(int idim=0; idim<fNDim; idim++){
330 buffer[ipar++] = nnode->fData[idim];
331 for(int jdim=idim; jdim<fNDim; jdim++) buffer[ipar++] = nnode->fData[idim]*nnode->fData[jdim];
333 fitter.AddPoint(buffer,nnode->fVal[0], nnode->fVal[1]/w);
335 // Ensure Boundary Condition
336 for(Int_t kdim=0;kdim<fNDim;kdim++){
337 if(node->fBounds[2*kdim]==0){
338 Float_t zdata[fNDim];
339 memcpy(&zdata[0],node->fData,fNDim*sizeof(Float_t));
342 for(int idim=0; idim<fNDim; idim++){
343 buffer[ipar++] = zdata[idim];
344 for(int jdim=idim; jdim<fNDim; jdim++) buffer[ipar++] = zdata[idim]*zdata[jdim];
346 fitter.AddPoint(buffer,0,1);
351 AliDebug(2,Form("Calculate Interpolation for Node %d",nodeIndex));
354 // retrive fitter results
355 TMatrixD cov(fLambda, fLambda);
356 TVectorD par(fLambda);
357 fitter.GetCovarianceMatrix(cov);
358 fitter.GetParameters(par);
361 node->Store(&par,&cov);
365 for(int id=0; id<fNDim; id++){
366 delete refPoints[id];
371 //_________________________________________________________________
372 void AliTRDTKDInterpolator::BuildBoundaryNodes(){
376 Float_t treebounds[2*fNDim];
377 for(Int_t idim=0;idim<fNDim;idim++){
378 GetRange(idim,&treebounds[2*idim]);
381 for(int inode=0; inode<GetNTNodes(); inode++){
383 AliTRDTKDNodeInfo *node=GetNodeInfo(inode);
385 for(Int_t vdim=0;vdim<fNDim;vdim++){
387 // Try expansion to lower and higher values
388 for(Int_t iter=0;iter<2;iter++){
389 if(node->fBounds[2*vdim+iter]==treebounds[2*vdim+iter]){
392 new ((*fNodes)[GetNTNodes()]) AliTRDTKDNodeInfo(fNDim);
394 AliTRDTKDNodeInfo *newnode = GetNodeInfo(GetNTNodes()-1);
395 if(iter==0)newnode->fBounds[2*vdim+iter]=0;
396 if(iter==1)newnode->fBounds[2*vdim+iter]=2*treebounds[2*vdim+iter];
397 newnode->fBounds[2*vdim+!iter]=node->fBounds[2*vdim+iter];
398 for(Int_t idim=0;idim<fNDim;idim++){
399 if(idim==vdim)continue;
400 newnode->fBounds[2*idim]=node->fBounds[2*idim];
401 newnode->fBounds[2*idim+1]=node->fBounds[2*idim+1];
404 newnode->fVal[1]=Float_t(1)/fNPoints;
405 for(int idim=0; idim<fNDim; idim++){
406 newnode->fVal[1] /= (newnode->fBounds[2*idim+1] - newnode->fBounds[2*idim]);
407 newnode->fData[idim]=0.5*(newnode->fBounds[2*idim+1] + newnode->fBounds[2*idim]);
414 AliInfo(Form("%d Boundary Nodes Added \n",nnew));
417 //_________________________________________________________________
418 AliTRDTKDInterpolator::AliTRDTKDNodeInfo::AliTRDTKDNodeInfo(Int_t ndim):
422 ,fNPar(1 + ndim + (ndim*(ndim+1)>>1))
423 ,fNCov(Int_t((fNPar+1)*fNPar/2))
429 // Default constructor
430 fVal[0] = 0.; fVal[1] = 0.;
431 fData=new Float_t[fNDim];
432 fBounds=new Float_t[fNBounds];
435 //_________________________________________________________________
436 AliTRDTKDInterpolator::AliTRDTKDNodeInfo::AliTRDTKDNodeInfo(const AliTRDTKDInterpolator::AliTRDTKDNodeInfo &ref):
439 ,fNBounds(ref.fNBounds)
450 fData = new Float_t[fNDim];
451 memcpy(fData, ref.fData, fNDim*sizeof(Float_t));
454 fBounds = new Float_t[2*fNDim];
455 memcpy(fBounds, ref.fBounds, 2*fNDim*sizeof(Float_t));
458 fVal[0] = ref.fVal[0];
459 fVal[1] = ref.fVal[1];
462 fPar=new Double_t[fNPar];
463 memcpy(fPar, ref.fPar, fNPar*sizeof(Double_t));
466 fCov=new Double_t[fNCov];
467 memcpy(fCov, ref.fCov, fNCov*sizeof(Double_t));
471 //_________________________________________________________________
472 AliTRDTKDInterpolator::AliTRDTKDNodeInfo::~AliTRDTKDNodeInfo()
475 if(fData) delete [] fData;
476 if(fBounds) delete [] fBounds;
477 if(fPar) delete [] fPar;
478 if(fCov) delete [] fCov;
481 //_________________________________________________________________
482 AliTRDTKDInterpolator::AliTRDTKDNodeInfo &AliTRDTKDInterpolator::AliTRDTKDNodeInfo::operator=(const AliTRDTKDInterpolator::AliTRDTKDNodeInfo &ref)
485 // Assignment operator
488 if(&ref==this) return *this;
489 memcpy(fData, ref.fData, fNDim*sizeof(Float_t));
490 memcpy(fBounds, ref.fBounds, 2*fNDim*sizeof(Float_t));
492 fVal[0] = ref.fVal[0];
493 fVal[1] = ref.fVal[1];
496 fPar=new Double_t[fNPar];
497 memcpy(fPar, ref.fPar, fNPar*sizeof(Double_t));
500 fCov=new Double_t[fNCov];
501 memcpy(fCov, ref.fCov, fNCov*sizeof(Double_t));
507 //_________________________________________________________________
508 void AliTRDTKDInterpolator::AliTRDTKDNodeInfo::Print(const Option_t *opt) const
510 // Print the content of the node
512 for(int idim=0; idim<fNDim; idim++) printf("%f ", fData?fData[idim]:0.);
513 printf("] f = [%e +- %e]\n", fVal[0], fVal[1]);
517 for(int idim=0; idim<fNDim; idim++) printf("(%f %f) ", fBounds[2*idim], fBounds[2*idim+1]);
520 if(strcmp(opt, "a")!=0) return;
523 printf("Fit parameters : \n");
524 for(int ip=0; ip<fNPar; ip++) printf("p%d[%e] ", ip, fPar[ip]);
528 for(int ip(0), n(0); ip<fNPar; ip++){
529 for(int jp(ip); jp<fNPar; jp++) printf("c(%d %d)[%e] ", ip, jp, fCov[n++]);
534 //_________________________________________________________________
535 void AliTRDTKDInterpolator::AliTRDTKDNodeInfo::Store(TVectorD const *par, TMatrixD const *cov)
537 // Store the parameters and the covariance in the node
539 AliDebug(2,"Store Node Interpolation Parameters");
541 if((AliLog::GetDebugLevel("",IsA()->GetName()))>=10){
546 if(!fPar){fPar = new Double_t[fNPar];}
547 for(int ip=0; ip<fNPar; ip++) fPar[ip] = (*par)[ip];
549 if(!fCov){fCov = new Double_t[fNCov];}
550 for(int ip(0), np(0); ip<fNPar; ip++)
551 for(int jp=ip; jp<fNPar; jp++) fCov[np++] = (*cov)(ip,jp);
553 if((AliLog::GetDebugLevel("",IsA()->GetName()))>10){this->Print("a");}
556 //_________________________________________________________________
557 Bool_t AliTRDTKDInterpolator::AliTRDTKDNodeInfo::CookPDF(const Double_t *point, Double_t &result, Double_t &error,TRDTKDMode mod) const
559 // Recalculate the PDF for one node from the results of interpolation (parameters and covariance matrix)
561 result =0.; error = 1.;
570 AliDebug(1,"Requested Interpolation Parameters don't exist");
574 Double_t fdfdp[fNDim];
577 for(int idim=0; idim<fNDim; idim++){
578 fdfdp[ipar++] = point[idim];
579 for(int jdim=idim; jdim<fNDim; jdim++) fdfdp[ipar++] = point[idim]*point[jdim];
582 // calculate estimation
583 for(int i=0; i<fNPar; i++) result += fdfdp[i]*fPar[i];
586 AliDebug(3,"Interpolation Error cannot be estimated, Covariance Parameters don't exist");
592 for(int i(0), n(0); i<fNPar; i++){
593 error += fdfdp[i]*fdfdp[i]*fCov[n++];
594 for(int j(i+1); j<fNPar; j++) error += 2.*fdfdp[i]*fdfdp[j]*fCov[n++];
596 if(error>0)error = TMath::Sqrt(error);
608 // Boundary condition
610 AliDebug(2,"Using Node Value to ensure Boundary Condition");
615 AliDebug(1,Form("Cook PDF Result: %e Error: %e",result,error));
620 //_____________________________________________________________________
621 Bool_t AliTRDTKDInterpolator::AliTRDTKDNodeInfo::Has(const Float_t *p) const
624 for(int id=0; id<fNDim; id++)
625 if(p[id]>=fBounds[2*id] && p[id]<fBounds[2*id+1]) n++;
626 if(n==fNDim) return kTRUE;