fContainers(NULL),
fInputs(NULL),
fOutputs(NULL),
+ fCommonInput(NULL),
+ fCommonOutput(NULL),
fSelector(NULL),
- fGridHandler(NULL)
+ fGridHandler(NULL),
+ fExtraFiles("")
{
// Default constructor.
fgAnalysisManager = this;
fContainers(NULL),
fInputs(NULL),
fOutputs(NULL),
+ fCommonInput(NULL),
+ fCommonOutput(NULL),
fSelector(NULL),
- fGridHandler(NULL)
+ fGridHandler(NULL),
+ fExtraFiles()
{
// Copy constructor.
fTasks = new TObjArray(*other.fTasks);
fContainers = new TObjArray(*other.fContainers);
fInputs = new TObjArray(*other.fInputs);
fOutputs = new TObjArray(*other.fOutputs);
+ fCommonInput = NULL;
+ fCommonOutput = NULL;
fSelector = NULL;
fGridHandler = NULL;
+ fExtraFiles = other.fExtraFiles;
fgAnalysisManager = this;
}
return *this;
if (!fInitOK) InitAnalysis();
if (!fInitOK) return kFALSE;
fTree = tree;
- AliAnalysisDataContainer *top = (AliAnalysisDataContainer*)fInputs->At(0);
+ AliAnalysisDataContainer *top = fCommonInput;
+ if (!top) top = (AliAnalysisDataContainer*)fInputs->At(0);
if (!top) {
Error("Init","No top input container !");
return kFALSE;
// Call Init of EventHandler
if (fOutputEventHandler) {
if (fMode == kProofAnalysis) {
- TIter nextout(fOutputs);
- AliAnalysisDataContainer *c_aod;
- while ((c_aod=(AliAnalysisDataContainer*)nextout())) if (!strcmp(c_aod->GetFileName(),"default")) break;
- if (c_aod && c_aod->IsSpecialOutput()) {
- // Merging via files
- if (fDebug > 1) printf(" Initializing special output file %s...\n", fOutputEventHandler->GetOutputFileName());
- OpenProofFile(fOutputEventHandler->GetOutputFileName(), "RECREATE");
- c_aod->SetFile(gFile);
- init = fOutputEventHandler->Init("proofspecial");
- if (!init) msg = "Failed to initialize output handler on worker using special proof output";
- } else {
- // Merging in memory
- init = fOutputEventHandler->Init("proof");
- if (!init) msg = "Failed to initialize output handler on worker";
- }
+ // Merging AOD's in PROOF via TProofOutputFile
+ if (fDebug > 1) printf(" Initializing AOD output file %s...\n", fOutputEventHandler->GetOutputFileName());
+ init = fOutputEventHandler->Init("proof");
+ if (!init) msg = "Failed to initialize output handler on worker";
} else {
init = fOutputEventHandler->Init("local");
- if (!init) msg = "Failed to initialize output handler on worker";
+ if (!init) msg = "Failed to initialize output handler";
}
initOK &= init;
if (!fSelector) Error("SlaveBegin", "Selector not set");
const char *filename = output->GetFileName();
if (!(strcmp(filename, "default")) && fOutputEventHandler) {
isManagedByHandler = kTRUE;
+ printf("#### Handler output. Extra: %s\n", fExtraFiles.Data());
filename = fOutputEventHandler->GetOutputFileName();
}
// Check if data was posted to this container. If not, issue an error.
} else {
if (output->GetData()->InheritsFrom(TTree::Class())) {
TTree *tree = (TTree*)output->GetData();
- tree->SetDirectory(file);
+ // tree->SetDirectory(file);
tree->AutoSave();
} else {
output->GetData()->Write();
wrap->SetDeleteData(kFALSE);
target->Add(wrap);
} else {
- // Special outputs
+ // Special outputs. The file must be opened and connected to the container.
TDirectory *opwd = gDirectory;
TFile *file = output->GetFile();
- if (fDebug > 1 && file) printf("PackOutput %s: file merge, special output\n", output->GetName());
+ if (!file) {
+ AliAnalysisTask *producer = output->GetProducer();
+ Error("PackOutput",
+ "File %s for special container %s was NOT opened in %s::CreateOutputObjects !!!",
+ output->GetFileName(), output->GetName(), producer->ClassName());
+ continue;
+ }
+ TString outFilename = file->GetName();
+ if (fDebug > 1) printf("PackOutput %s: special output\n", output->GetName());
if (isManagedByHandler) {
// Terminate IO for files managed by the output handler
if (file) file->Write();
file->ls();
}
fOutputEventHandler->TerminateIO();
- continue;
- }
-
- if (!file) {
- AliAnalysisTask *producer = output->GetProducer();
- Error("PackOutput",
- "File %s for special container %s was NOT opened in %s::CreateOutputObjects !!!",
- output->GetFileName(), output->GetName(), producer->ClassName());
- continue;
- }
- file->cd();
- // Release object ownership to users after writing data to file
- if (output->GetData()->InheritsFrom(TCollection::Class())) {
- // If data is a collection, we set the name of the collection
- // as the one of the container and we save as a single key.
- TCollection *coll = (TCollection*)output->GetData();
- coll->SetName(output->GetName());
- coll->Write(output->GetName(), TObject::kSingleKey);
- } else {
- if (output->GetData()->InheritsFrom(TTree::Class())) {
- TTree *tree = (TTree*)output->GetData();
- tree->SetDirectory(file);
- tree->AutoSave();
+ } else {
+ file->cd();
+ // Release object ownership to users after writing data to file
+ if (output->GetData()->InheritsFrom(TCollection::Class())) {
+ // If data is a collection, we set the name of the collection
+ // as the one of the container and we save as a single key.
+ TCollection *coll = (TCollection*)output->GetData();
+ coll->SetName(output->GetName());
+ coll->Write(output->GetName(), TObject::kSingleKey);
} else {
- output->GetData()->Write();
- }
- }
- file->Clear();
- if (fDebug > 2) {
- printf(" file %s listing content:\n", output->GetFileName());
- file->ls();
+ if (output->GetData()->InheritsFrom(TTree::Class())) {
+ TTree *tree = (TTree*)output->GetData();
+ tree->SetDirectory(file);
+ tree->AutoSave();
+ } else {
+ output->GetData()->Write();
+ }
+ }
+ file->Clear();
+ if (fDebug > 2) {
+ printf(" file %s listing content:\n", output->GetFileName());
+ file->ls();
+ }
+ file->Close();
}
- TString outFilename = file->GetName();
- file->Close();
// Restore current directory
if (opwd) opwd->cd();
// Check if a special output location was provided or the output files have to be merged
TString remote = fSpecialOutputLocation;
remote += "/";
Int_t gid = gROOT->ProcessLine("gProofServ->GetGroupId();");
- remote += Form("%s_%d_", gSystem->HostName(), gid);
- remote += output->GetFileName();
+ if (remote.BeginsWith("alien://")) {
+ gROOT->ProcessLine("TGrid::Connect(\"alien://pcapiserv01.cern.ch:10000\", gProofServ->GetUser());");
+ remote += outFilename;
+ remote.ReplaceAll(".root", Form("_%d.root", gid));
+ } else {
+ remote += Form("%s_%d_", gSystem->HostName(), gid);
+ remote += outFilename;
+ }
+ if (fDebug > 1)
+ Info("PackOutput", "Output file for container %s to be copied \n at: %s. No merging.",
+ output->GetName(), remote.Data());
TFile::Cp ( outFilename.Data(), remote.Data() );
+ // Copy extra outputs
+ if (fExtraFiles.Length() && isManagedByHandler) {
+ TObjArray *arr = fExtraFiles.Tokenize(" ");
+ TObjString *os;
+ TIter nextfilename(arr);
+ while ((os=(TObjString*)nextfilename())) {
+ outFilename = os->GetString();
+ remote = fSpecialOutputLocation;
+ remote += "/";
+ if (remote.BeginsWith("alien://")) {
+ remote += outFilename;
+ remote.ReplaceAll(".root", Form("_%d.root", gid));
+ } else {
+ remote += Form("%s_%d_", gSystem->HostName(), gid);
+ remote += outFilename;
+ }
+ if (fDebug > 1)
+ Info("PackOutput", "Extra AOD file %s to be copied \n at: %s. No merging.",
+ outFilename.Data(), remote.Data());
+ TFile::Cp ( outFilename.Data(), remote.Data() );
+ }
+ delete arr;
+ }
} else {
// No special location specified-> use TProofOutputFile as merging utility
// The file at this output slot must be opened in CreateOutputObjects
- if (fDebug > 1) printf(" File %s to be merged...\n", output->GetFileName());
+ if (fDebug > 1) printf(" File for container %s to be merged via file merger...\n", output->GetName());
}
}
}
filename = fOutputEventHandler->GetOutputFileName();
}
if (cont->IsSpecialOutput() || inGrid) {
- if (strlen(fSpecialOutputLocation.Data()) && !isManagedByHandler) continue;
+ if (strlen(fSpecialOutputLocation.Data())) continue;
// Copy merged file from PROOF scratch space.
// In case of grid the files are already in the current directory.
if (!inGrid) {
- char full_path[512];
- char ch_url[512];
- TObject *pof = source->FindObject(filename);
- if (!pof || !pof->InheritsFrom("TProofOutputFile")) {
- Error("ImportWrappers", "TProofOutputFile object not found in output list for container %s", cont->GetName());
- continue;
- }
- gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", ((TProofOutputFile*)0x%lx)->GetOutputFileName();)", full_path, pof));
- gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", gProof->GetUrl();)", ch_url));
- TString clientUrl(ch_url);
- TString full_path_str(full_path);
- if (clientUrl.Contains("localhost")){
- TObjArray* array = full_path_str.Tokenize ( "//" );
- TObjString *strobj = ( TObjString *)array->At(1);
- TObjArray* arrayPort = strobj->GetString().Tokenize ( ":" );
- TObjString *strobjPort = ( TObjString *) arrayPort->At(1);
- full_path_str.ReplaceAll(strobj->GetString().Data(),"localhost:PORT");
- full_path_str.ReplaceAll(":PORT",Form(":%s",strobjPort->GetString().Data()));
- if (fDebug > 1) Info("ImportWrappers","Using tunnel from %s to %s",full_path_str.Data(),filename);
- }
- if (fDebug > 1)
- printf(" Copying file %s from PROOF scratch space\n", full_path_str.Data());
- Bool_t gotit = TFile::Cp(full_path_str.Data(), filename);
- if (!gotit) {
- Error("ImportWrappers", "Could not get file %s from proof scratch space", cont->GetFileName());
- continue;
+ if (isManagedByHandler && fExtraFiles.Length()) {
+ // Copy extra registered dAOD files.
+ TObjArray *arr = fExtraFiles.Tokenize(" ");
+ TObjString *os;
+ TIter nextfilename(arr);
+ while ((os=(TObjString*)nextfilename())) GetFileFromWrapper(os->GetString(), source);
+ delete arr;
}
+ if (!GetFileFromWrapper(filename, source)) continue;
}
// Normally we should connect data from the copied file to the
// corresponding output container, but it is not obvious how to do this
while ((output=(AliAnalysisDataContainer*)next1())) {
// Close all files at output
TDirectory *opwd = gDirectory;
- if (output->GetFile()) output->GetFile()->Close();
+ if (output->GetFile()) {
+ output->GetFile()->Close();
+ // Copy merged outputs in alien if requested
+ if (fSpecialOutputLocation.Length() &&
+ fSpecialOutputLocation.BeginsWith("alien://")) {
+ Info("Terminate", "Copy file %s to %s", output->GetFile()->GetName(),fSpecialOutputLocation.Data());
+ TFile::Cp(output->GetFile()->GetName(),
+ Form("%s/%s", fSpecialOutputLocation.Data(), output->GetFile()->GetName()));
+ }
+ }
if (opwd) opwd->cd();
}
tree->SetMarkerSize(0.5);
if (!gROOT->IsBatch()) {
tree->SetAlias("event", "id0");
- tree->SetAlias("memUSED", "pI.fMemVirtual");
- tree->SetAlias("userCPU", "pI.fCpuUser");
- TCanvas *c = new TCanvas("SysInfo","SysInfo",10,10,800,600);
- c->Divide(2,1,0.01,0.01);
- c->cd(1);
+ tree->SetAlias("memUSED", "mi.fMemUsed");
+ new TCanvas("SysInfo","SysInfo",10,10,800,600);
tree->Draw("memUSED:event","","", 1234567890, 0);
- c->cd(2);
- tree->Draw("userCPU:event","","", 1234567890, 0);
}
tree->Write();
f.Close();
AliAnalysisDataContainer *cont)
{
// Connect input of an existing task to a data container.
+ if (!task) {
+ Error("ConnectInput", "Task pointer is NULL");
+ return kFALSE;
+ }
if (!fTasks->FindObject(task)) {
AddTask(task);
Info("ConnectInput", "Task %s was not registered. Now owned by analysis manager", task->GetName());
AliAnalysisDataContainer *cont)
{
// Connect output of an existing task to a data container.
+ if (!task) {
+ Error("ConnectOutput", "Task pointer is NULL");
+ return kFALSE;
+ }
if (!fTasks->FindObject(task)) {
AddTask(task);
Warning("ConnectOutput", "Task %s not registered. Now owned by analysis manager", task->GetName());
while ((task=(AliAnalysisTask*)nextTask())) {
task->LocalInit();
}
- fGridHandler->StartAnalysis(nentries, firstentry);
+ if (!fGridHandler->StartAnalysis(nentries, firstentry)) {
+ Info("StartAnalysis", "Grid analysis was stopped and cannot be terminated");
+ return;
+ }
// Terminate grid analysis
if (fSelector && fSelector->GetStatus() == -1) return;
if (fMode!=kProofAnalysis || !fSelector) {
Error("OpenProofFile","Cannot open PROOF file %s",filename);
return NULL;
+ }
+ if (fSpecialOutputLocation.Length()) {
+ TFile *f = (TFile*)gROOT->GetListOfFiles()->FindObject(filename);
+ if (!f) f = new TFile(filename, option);
+ return f;
}
sprintf(line, "TProofOutputFile *pf = new TProofOutputFile(\"%s\");", filename);
if (fDebug > 1) printf("=== %s\n", line);
TIter next(fTasks);
// De-activate all tasks
while ((task=(AliAnalysisTask*)next())) task->SetActive(kFALSE);
- AliAnalysisDataContainer *cont = (AliAnalysisDataContainer*)fInputs->At(0);
+ AliAnalysisDataContainer *cont = fCommonInput;
+ if (!cont) cont = (AliAnalysisDataContainer*)fInputs->At(0);
if (!cont) {
Error("ExecAnalysis","Cannot execute analysis in TSelector mode without at least one top container");
return;
{
// Finish analysis.
}
+
+//______________________________________________________________________________
+void AliAnalysisManager::SetInputEventHandler(AliVEventHandler* handler)
+{
+// Set the input event handler and create a container for it.
+ fInputEventHandler = handler;
+ fCommonInput = CreateContainer("cAUTO_INPUT", TChain::Class(), AliAnalysisManager::kInputContainer);
+ Warning("SetInputEventHandler", " An automatic input container for the input chain was created.\nPlease use: mgr->GetCommonInputContainer() to access it.");
+}
+
+//______________________________________________________________________________
+void AliAnalysisManager::SetOutputEventHandler(AliVEventHandler* handler)
+{
+// Set the input event handler and create a container for it.
+ fOutputEventHandler = handler;
+ fCommonOutput = CreateContainer("cAUTO_OUTPUT", TTree::Class(), AliAnalysisManager::kOutputContainer, "default");
+ fCommonOutput->SetSpecialOutput();
+ Warning("SetOutputEventHandler", " An automatic output container for the output tree was created.\nPlease use: mgr->GetCommonOutputContainer() to access it.");
+}
+
+//______________________________________________________________________________
+void AliAnalysisManager::RegisterExtraFile(const char *fname)
+{
+// This method is used externally to register output files which are not
+// connected to any output container, so that the manager can properly register,
+// retrieve or merge them when running in distributed mode. The file names are
+// separated by blancs. The method has to be called in MyAnalysisTask::LocalInit().
+ if (fExtraFiles.Length()) fExtraFiles += " ";
+ fExtraFiles += fname;
+}
+
+//______________________________________________________________________________
+Bool_t AliAnalysisManager::GetFileFromWrapper(const char *filename, TList *source)
+{
+// Copy a file from the location specified ina the wrapper with the same name from the source list.
+ char full_path[512];
+ char ch_url[512];
+ TObject *pof = source->FindObject(filename);
+ if (!pof || !pof->InheritsFrom("TProofOutputFile")) {
+ Error("GetFileFromWrapper", "TProofOutputFile object not found in output list for file %s", filename);
+ return kFALSE;
+ }
+ gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", ((TProofOutputFile*)0x%lx)->GetOutputFileName();)", full_path, pof));
+ gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", gProof->GetUrl();)", ch_url));
+ TString clientUrl(ch_url);
+ TString full_path_str(full_path);
+ if (clientUrl.Contains("localhost")){
+ TObjArray* array = full_path_str.Tokenize ( "//" );
+ TObjString *strobj = ( TObjString *)array->At(1);
+ TObjArray* arrayPort = strobj->GetString().Tokenize ( ":" );
+ TObjString *strobjPort = ( TObjString *) arrayPort->At(1);
+ full_path_str.ReplaceAll(strobj->GetString().Data(),"localhost:PORT");
+ full_path_str.ReplaceAll(":PORT",Form(":%s",strobjPort->GetString().Data()));
+ if (fDebug > 1) Info("GetFileFromWrapper","Using tunnel from %s to %s",full_path_str.Data(),filename);
+ delete arrayPort;
+ delete array;
+ }
+ if (fDebug > 1)
+ Info("GetFileFromWrapper","Copying file %s from PROOF scratch space", full_path_str.Data());
+ Bool_t gotit = TFile::Cp(full_path_str.Data(), filename);
+ if (!gotit)
+ Error("GetFileFromWrapper", "Could not get file %s from proof scratch space", filename);
+ return gotit;
+}
+
+//______________________________________________________________________________
+void AliAnalysisManager::GetAnalysisTypeString(TString &type) const
+{
+// Fill analysis type in the provided string.
+ switch (fMode) {
+ case kLocalAnalysis:
+ type = "local";
+ return;
+ case kProofAnalysis:
+ type = "proof";
+ return;
+ case kGridAnalysis:
+ type = "grid";
+ return;
+ case kMixingAnalysis:
+ type = "mix";
+ }
+}
git://git.uio.no / u / mrichter / AliRoot.git / blobdiff