#include <TClass.h>
#include <TFile.h>
+#include <TKey.h>
#include <TMethodCall.h>
#include <TChain.h>
#include <TSystem.h>
#include <TCanvas.h>
#include "AliAnalysisSelector.h"
+#include "AliAnalysisGrid.h"
#include "AliAnalysisTask.h"
#include "AliAnalysisDataContainer.h"
#include "AliAnalysisDataSlot.h"
fInputEventHandler(NULL),
fOutputEventHandler(NULL),
fMCtruthEventHandler(NULL),
- fEventPool(NULL),
+ fEventPool(NULL),
fCurrentEntry(-1),
fNSysInfo(0),
fMode(kLocalAnalysis),
fContainers(NULL),
fInputs(NULL),
fOutputs(NULL),
- fSelector(NULL)
+ fSelector(NULL),
+ fGridHandler(NULL)
{
// Default constructor.
fgAnalysisManager = this;
fContainers(NULL),
fInputs(NULL),
fOutputs(NULL),
- fSelector(NULL)
+ fSelector(NULL),
+ fGridHandler(NULL)
{
// Copy constructor.
fTasks = new TObjArray(*other.fTasks);
fInputs = new TObjArray(*other.fInputs);
fOutputs = new TObjArray(*other.fOutputs);
fSelector = NULL;
+ fGridHandler = NULL;
fgAnalysisManager = this;
}
return *this;
if (fContainers) {fContainers->Delete(); delete fContainers;}
if (fInputs) delete fInputs;
if (fOutputs) delete fOutputs;
+ if (fGridHandler) delete fGridHandler;
if (fgAnalysisManager==this) fgAnalysisManager = NULL;
}
if (fDebug > 2) {
printf(" file %s listing content:\n", output->GetFileName());
file->ls();
- }
+ }
+ TString outFilename = file->GetName();
file->Close();
// Restore current directory
if (opwd) opwd->cd();
Int_t gid = gROOT->ProcessLine("gProofServ->GetGroupId();");
remote += Form("%s_%d_", gSystem->HostName(), gid);
remote += output->GetFileName();
- TFile::Cp(output->GetFileName(), remote.Data());
+ TFile::Cp ( outFilename.Data(), remote.Data() );
} else {
// No special location specified-> use TProofOutputFile as merging utility
// The file at this output slot must be opened in CreateOutputObjects
AliAnalysisDataContainer *cont;
AliAnalysisDataWrapper *wrap;
Int_t icont = 0;
+ Bool_t inGrid = (fMode == kGridAnalysis)?kTRUE:kFALSE;
while ((cont=(AliAnalysisDataContainer*)next())) {
wrap = 0;
- if (cont->GetProducer()->IsPostEventLoop()) continue;
+ if (cont->GetProducer()->IsPostEventLoop() && !inGrid) continue;
const char *filename = cont->GetFileName();
Bool_t isManagedByHandler = kFALSE;
if (!(strcmp(filename, "default")) && fOutputEventHandler) {
isManagedByHandler = kTRUE;
filename = fOutputEventHandler->GetOutputFileName();
}
- if (cont->IsSpecialOutput()) {
+ if (cont->IsSpecialOutput() || inGrid) {
if (strlen(fSpecialOutputLocation.Data()) && !isManagedByHandler) continue;
- // Copy merged file from PROOF scratch space
- char full_path[512];
- TObject *pof = source->FindObject(filename);
- if (!pof || !pof->InheritsFrom("TProofOutputFile")) {
- Error("ImportWrappers", "TProofOutputFile object not found in output list for container %s", cont->GetName());
- continue;
- }
- gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", ((TProofOutputFile*)0x%lx)->GetOutputFileName();)", full_path, pof));
- if (fDebug > 1)
- printf(" Copying file %s from PROOF scratch space\n", full_path);
- Bool_t gotit = TFile::Cp(full_path, filename);
- if (!gotit) {
- Error("ImportWrappers", "Could not get file %s from proof scratch space", cont->GetFileName());
- }
+ // Copy merged file from PROOF scratch space.
+ // In case of grid the files are already in the current directory.
+ if (!inGrid) {
+ char full_path[512];
+ char ch_url[512];
+ TObject *pof = source->FindObject(filename);
+ if (!pof || !pof->InheritsFrom("TProofOutputFile")) {
+ Error("ImportWrappers", "TProofOutputFile object not found in output list for container %s", cont->GetName());
+ continue;
+ }
+ gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", ((TProofOutputFile*)0x%lx)->GetOutputFileName();)", full_path, pof));
+ gROOT->ProcessLine(Form("sprintf((char*)0x%lx, \"%%s\", gProof->GetUrl();)", ch_url));
+ TString clientUrl(ch_url);
+ TString full_path_str(full_path);
+ if (clientUrl.Contains("localhost")){
+ TObjArray* array = full_path_str.Tokenize ( "//" );
+ TObjString *strobj = ( TObjString *)array->At(1);
+ TObjArray* arrayPort = strobj->GetString().Tokenize ( ":" );
+ TObjString *strobjPort = ( TObjString *) arrayPort->At(1);
+ full_path_str.ReplaceAll(strobj->GetString().Data(),"localhost:PORT");
+ full_path_str.ReplaceAll(":PORT",Form(":%s",strobjPort->GetString().Data()));
+ if (fDebug > 1) Info("ImportWrappers","Using tunnel from %s to %s",full_path_str.Data(),filename);
+ }
+ if (fDebug > 1)
+ printf(" Copying file %s from PROOF scratch space\n", full_path_str.Data());
+ Bool_t gotit = TFile::Cp(full_path_str.Data(), filename);
+ if (!gotit) {
+ Error("ImportWrappers", "Could not get file %s from proof scratch space", cont->GetFileName());
+ continue;
+ }
+ }
// Normally we should connect data from the copied file to the
// corresponding output container, but it is not obvious how to do this
// automatically if several objects in file...
- TFile *f = new TFile(filename, "READ");
- TObject *obj = 0;
- if (!isManagedByHandler) obj = f->Get(cont->GetName());
- if (!obj && !isManagedByHandler) {
- Error("ImportWrappers", "Could not find object %s in file %s", cont->GetName(), filename);
+ TFile *f = TFile::Open(filename, "READ");
+ if (!f) {
+ Error("ImportWrappers", "Cannot open file %s in read-only mode", filename);
continue;
+ }
+ TObject *obj = 0;
+ // Try to fetch first a list object having the container name.
+ obj = f->Get(cont->GetName());
+ if (!obj) {
+ // Fetch first object from file having the container type.
+ TIter nextkey(f->GetListOfKeys());
+ TKey *key;
+ while ((key=(TKey*)nextkey())) {
+ obj = f->Get(key->GetName());
+ if (obj && obj->IsA()->InheritsFrom(cont->GetType())) break;
+ }
}
+ if (!obj) {
+ Error("ImportWrappers", "Could not find object for container %s in file %s", cont->GetName(), filename);
+ continue;
+ }
wrap = new AliAnalysisDataWrapper(obj);
wrap->SetDeleteData(kFALSE);
}
icont++;
if (fDebug > 1) {
printf(" Importing data for container %s", cont->GetName());
- if (strlen(filename)) printf(" -> file %s\n", cont->GetFileName());
+ if (strlen(filename)) printf(" -> file %s\n", filename);
else printf("\n");
}
cont->ImportData(wrap);
TIter next1(fOutputs);
AliAnalysisDataContainer *output;
while ((output=(AliAnalysisDataContainer*)next1())) {
- // Special outputs have the files already closed and written.
- if (output->IsSpecialOutput()) continue;
+ // Special outputs or grid files have the files already closed and written.
+ if (fMode == kGridAnalysis) continue;
+ if (output->IsSpecialOutput()&&(fMode == kProofAnalysis)) continue;
const char *filename = output->GetFileName();
if (!(strcmp(filename, "default"))) {
if (fOutputEventHandler) filename = fOutputEventHandler->GetOutputFileName();
TString anaType = type;
anaType.ToLower();
fMode = kLocalAnalysis;
+ Bool_t runlocalinit = kTRUE;
+ if (anaType.Contains("file")) runlocalinit = kFALSE;
if (anaType.Contains("proof")) fMode = kProofAnalysis;
else if (anaType.Contains("grid")) fMode = kGridAnalysis;
else if (anaType.Contains("mix")) fMode = kMixingAnalysis;
if (fMode == kGridAnalysis) {
- Warning("StartAnalysis", "GRID analysis mode not implemented. Running local.");
- fMode = kLocalAnalysis;
+ if (!fGridHandler) {
+ Error("StartAnalysis", "Cannot start grid analysis without a grid handler.");
+ Info("===", "Add an AliAnalysisAlien object as plugin for this manager and configure it.");
+ return;
+ }
+ // Write analysis manager in the analysis file
+ cout << "===== RUNNING GRID ANALYSIS: " << GetName() << endl;
+ // run local task configuration
+ TIter nextTask(fTasks);
+ AliAnalysisTask *task;
+ while ((task=(AliAnalysisTask*)nextTask())) {
+ task->LocalInit();
+ }
+ fGridHandler->StartAnalysis(nentries, firstentry);
+
+ // Terminate grid analysis
+ if (fGridHandler->GetRunMode() == AliAnalysisGrid::kOffline) return;
+ cout << "===== MERGING OUTPUTS REGISTERED BY YOUR ANALYSIS JOB: " << GetName() << endl;
+ if (!fGridHandler->MergeOutputs()) {
+ // Return if outputs could not be merged or if it alien handler
+ // was configured for offline mode or local testing.
+ return;
+ }
+ ImportWrappers(NULL);
+ Terminate();
+ return;
}
char line[256];
SetEventLoop(kFALSE);
// Initialize locally all tasks (happens for all modes)
TIter next(fTasks);
AliAnalysisTask *task;
- while ((task=(AliAnalysisTask*)next())) {
- task->LocalInit();
- }
+ if (runlocalinit) {
+ while ((task=(AliAnalysisTask*)next())) {
+ task->LocalInit();
+ }
+ }
switch (fMode) {
case kLocalAnalysis:
git://git.uio.no / u / mrichter / AliRoot.git / blobdiff