]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - HLT/PHOS/AliHLTPHOSRawAnalyzerComponent.cxx
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[u/mrichter/AliRoot.git] / HLT / PHOS / AliHLTPHOSRawAnalyzerComponent.cxx
index 91087091b98f963e0d20ca3327dd67fa37b41844..ec80d2eaaacc176149c87d8e4645ed84e408d357 100644 (file)
  * provided "as is" without express or implied warranty.                  *
  **************************************************************************/
 
-
-/// @class AliHLTPHOSRawAnalyzerComponent
-/// Base class of PHOS HLT online raw analysis component.
-/// The class provides a common interface for the implementation of PHOS 
-/// HLT raw data
-/// processors components. The class is intended for processing of 
-/// arrays of raw data samples to evaluate energy and timing.
-/// The Energy will be given in entities of ADC leves ranging from 0 to
-/// 1023. Timing will be given in entities of samples periods.
-/// Drived clases  must implement the fucntions
-/// - @ref GetComponentID
-/// - @ref Spawn
-
-
-
 #include "AliHLTPHOSRawAnalyzer.h"
 #include "AliHLTPHOSRawAnalyzerComponent.h"
-#include "AliRawReaderMemory.h"
-#include "AliCaloRawStream.h"
-#include <iostream>
 #include "AliHLTPHOSRcuCellEnergyDataStruct.h"
-#include "AliHLTPHOSRcuChannelDataStruct.h"
-
-using namespace std;
-
-
-const AliHLTComponentDataType AliHLTPHOSRawAnalyzerComponent::fgkInputDataTypes[]={kAliHLTVoidDataType,{0,"",""}}; //'zero' terminated array
-int   AliHLTPHOSRawAnalyzerComponent::fgEventCount = 0; 
-
-
-
-AliHLTPHOSRawAnalyzerComponent::AliHLTPHOSRawAnalyzerComponent():AliHLTProcessor(), fAnalyzerPtr(0), 
-fEquippmentID(0), fModuleID(0), fRcuX(0), fRcuZ(0),fRcuZOffset(0), fRcuXOffset(0),fPrintInfo(kFALSE),fSendChannelData(kFALSE),fPrintInfoFrequncy(1000), 
-fPHOSRawStream(0), fRawMemoryReader(0), fOutPtr(0)
+#include "AliHLTPHOSMapper.h"
+#include "AliHLTPHOSSanityInspector.h"
+#include "AliHLTPHOSBaseline.h"
+#include "TFile.h"
+#include "TTree.h"
+#include "TClonesArray.h"
+#include "TH2F.h"
+#include "AliAltroDecoder.h"    // decoder for altro payload
+#include "AliAltroData.h"       // container for altro payload
+#include "AliAltroBunch.h"      // container for altro bunches
+
+
+AliHLTPHOSRawAnalyzerComponent::AliHLTPHOSRawAnalyzerComponent():AliHLTPHOSRcuProcessor(), 
+                                                                 fAnalyzerPtr(0), 
+                                                                 fSendChannelData(kFALSE),
+                                                                 fOutPtr(0), 
+                                                                 fMapperPtr(0), 
+                                                                 fSanityInspectorPtr(0),
+                                                                 fUseBaselineSubtraction(false), 
+                                                                 fDecoderPtr(0),  
+                                                                 fAltroDataPtr(0),
+                                                                 fAltroBunchPtr(0), 
+                                                       
+                                                                fDoPushRawData(false),
+                                                                fDoMakeDigits(0), 
+                                                                fDigitMakerPtr(0),
+                                                                
+                                                                fDigitContainerPtr(0),
+                                                                 fDoSelectiveReadOut(false),
+                                                                 fSelectedChannelsList(0),
+                                                                 fDoCheckDataSize(false),
+                                                                fNCorruptedBlocks(0),
+                                                                fNOKBlocks(0)
+                                                                 //fRawMemoryReader(0), fPHOSRawStream(0) 
 {
-  /**
-   *Default constructor
-   */
-} 
+  //comment
+  fMapperPtr = new AliHLTPHOSMapper();
+  fAltroDataPtr = new AliAltroData();
+  fAltroBunchPtr = new AliAltroBunch();
+  fDecoderPtr = new AliAltroDecoder();
+  fSanityInspectorPtr = new AliHLTPHOSSanityInspector();
+  fSelectedChannelsList = new AliHLTUInt16_t[N_XCOLUMNS_RCU*N_ZROWS_RCU*N_GAINS];
+}
 
 
 AliHLTPHOSRawAnalyzerComponent::~AliHLTPHOSRawAnalyzerComponent()
 {
-  /**
-   *Default destructor
-   */
-  if(fRawMemoryReader != 0)
-    {
-      delete fRawMemoryReader;
-    }
-    if(fPHOSRawStream != 0)
-    {
-      delete fPHOSRawStream;
-    }
+  Deinit();
 }
 
 
-AliHLTPHOSRawAnalyzerComponent::AliHLTPHOSRawAnalyzerComponent(const AliHLTPHOSRawAnalyzerComponent & ) : AliHLTProcessor(), fAnalyzerPtr(0), 
-fEquippmentID(0), fModuleID(0), fRcuX(0), fRcuZ(0),fRcuZOffset(0), fRcuXOffset(0),fPrintInfo(kFALSE),fSendChannelData(kFALSE),fPrintInfoFrequncy(1000), 
-fPHOSRawStream(0), fRawMemoryReader(0), fOutPtr(0)
-{
-  /**
-   *Copy Constructor
-   */
-}
 
 int 
 AliHLTPHOSRawAnalyzerComponent::Deinit()
 {
-  //See base class for documentation
-  cout <<  "Deinit" << endl;
-  return 0;
-}
-
-int 
-AliHLTPHOSRawAnalyzerComponent::DoDeinit()
-{
-  //See base class for documentation
-  cout << "DoDeinit" << endl;
-  Logging(kHLTLogInfo, "HLT", "PHOS", ",AliHLTPHOSRawAnalyzerComponen DoDeinit");
-
-  if(fRawMemoryReader !=0)
+  //comment
+  if(fMapperPtr)
+    {
+      delete  fMapperPtr;
+      fMapperPtr = 0;
+    }
+  if(fAltroDataPtr)
+    {
+      delete fAltroDataPtr;
+      fAltroDataPtr = 0;
+    }
+  if(fAltroBunchPtr)
     {
-      delete fRawMemoryReader;
+      delete fAltroBunchPtr;
+      fAltroBunchPtr = 0;
     }
-    
-  if(fPHOSRawStream != 0)
+  if(fDecoderPtr)
     {
-      delete fPHOSRawStream;
+      delete fDecoderPtr;
+      fDecoderPtr = 0;
     }
+  Logging(kHLTLogInfo, "HLT", "PHOS", ",AliHLTPHOSRawAnalyzerComponen Deinit");
   return 0;
-
 }
 
+
 const char* 
 AliHLTPHOSRawAnalyzerComponent::GetComponentID()
 {
-  ///Returns the component ID
+  //comment
   return "AliPhosTestRaw";
 }
 
@@ -121,154 +111,232 @@ AliHLTPHOSRawAnalyzerComponent::GetComponentID()
 void
 AliHLTPHOSRawAnalyzerComponent::GetInputDataTypes( vector<AliHLTComponentDataType>& list)
 {
-  //See Base class for documentation
-  const AliHLTComponentDataType* pType=fgkInputDataTypes;
-  while (pType->fID!=0) {
-    list.push_back(*pType);
-    pType++;
-  }
+  //comment
+  list.clear();
+  list.push_back( AliHLTPHOSDefinitions::fgkDDLPackedRawDataType | kAliHLTDataOriginPHOS);
 }
 
 AliHLTComponentDataType 
 AliHLTPHOSRawAnalyzerComponent::GetOutputDataType()
 {
-  //See Base class for documentation 
-  return AliHLTPHOSDefinitions::gkCellEnergyDataType;
+  //comment
+  return kAliHLTMultipleDataType;
+  //  return AliHLTPHOSDefinitions::fgkDigitDataType;
+}
+
+int 
+AliHLTPHOSRawAnalyzerComponent::GetOutputDataTypes(AliHLTComponentDataTypeList& tgtList)
+{
+  // Added by OD
+  // see header file for class documentation
+  tgtList.clear();
+  tgtList.push_back(AliHLTPHOSDefinitions::fgkCellEnergyDataType);
+   tgtList.push_back(kAliHLTDataTypeHwAddr16);
+  return tgtList.size();
 }
 
 void
 AliHLTPHOSRawAnalyzerComponent::GetOutputDataSize(unsigned long& constBase, double& inputMultiplier )
-
 {
-  //See Base class for documentation 
+  //comment
   constBase = 30;
-  //  inputMultiplier = 0.1;
-  inputMultiplier = 1;
+  inputMultiplier = 4;
+}
+
+
+
+
+void 
+AliHLTPHOSRawAnalyzerComponent::FillDataArray(UInt_t *data, const AliAltroData * /*altrodataptr */, const int /* channel */)
+{
+  ResetDataPtr(0, ALTRO_MAX_SAMPLES);
+  bool islastbunch = true;
+
+  while( fAltroDataPtr->NextBunch(fAltroBunchPtr) == true)
+    {
+      const UInt_t *tmpdata  = fAltroBunchPtr->GetData();
+   
+      if(islastbunch == true)
+       {
+         data[0] = fAltroBunchPtr->GetEndTimeBin();
+         islastbunch = false;
+       }
+
+      int tmpstartbin =  fAltroBunchPtr->GetStartTimeBin();
+      int tmpendbin =  fAltroBunchPtr->GetEndTimeBin();
+      int tmplength = tmpendbin -  tmpstartbin;
+
+      for(int i = 0; i < tmplength ; i++)
+       { 
+         data[i+tmpstartbin] = tmpdata[i];
+       }
+    }
+
+
+  /*
+  cout <<__FILE__ <<" : " <<__LINE__  << "the resulting array is"<<endl;
+  
+  for(int i=0; i<  data[0]; i++)
+    {
+      if(i != 0 && i %16 == 0)
+       {
+         cout << endl;
+       }
+      cout <<data[i] << "\t" ;
+    }
+  cout << endl;
+  */
 }
 
-int AliHLTPHOSRawAnalyzerComponent::DoEvent( const AliHLTComponentEventData& evtData, const AliHLTComponentBlockData* blocks, 
-                                             AliHLTComponentTriggerData& trigData, AliHLTUInt8_t* outputPtr, 
-                                             AliHLTUInt32_t& size, vector<AliHLTComponentBlockData>& outputBlocks )
+
+void 
+AliHLTPHOSRawAnalyzerComponent::GetFirstBunch(AliAltroData * /*altrodata */,  AliAltroBunch  * /*altrobunch */)
+{
+  while( fAltroDataPtr->NextBunch(fAltroBunchPtr) == true)
+    {
+      
+    }
+}
+
+
+int 
+AliHLTPHOSRawAnalyzerComponent::DoEvent( const AliHLTComponentEventData& evtData, const AliHLTComponentBlockData* blocks, AliHLTComponentTriggerData& /*trigData*/, 
+                                        AliHLTUInt8_t* outputPtr, AliHLTUInt32_t& size, vector<AliHLTComponentBlockData>& outputBlocks )
 {
-  /// Function that proceesses the raw date to give Energy and TOF for the
-  /// Individual cells/crystals.
-
-  AliHLTUInt8_t tmpMod    = 0;
-  AliHLTUInt8_t tmpZ      = 0;
-  AliHLTUInt8_t tmpX      = 0;
-  AliHLTUInt8_t tmpGain   = 0;
-  Int_t sampleCnt         = 0;
-  Int_t processedChannels = 0;
-  UInt_t offset           = 0; 
-  UInt_t mysize           = 0;
-  UInt_t tSize            = 0;
-  Int_t tmpChannelCnt     = 0;
-  Int_t tmpStartIndex     = 0;
+  //  cout << "Event" << fPhosEventCount  << endl;
+
+  UInt_t offset            = 0; 
+  UInt_t mysize            = 0;
+  UInt_t tSize             = 0;
+  Float_t baseline         = 0;
   AliHLTUInt8_t* outBPtr;
-  unsigned long first;
-  unsigned long last;
   outBPtr = outputPtr;
   const AliHLTComponentBlockData* iter = NULL; 
   unsigned long ndx;
-
+  Int_t *rawDataBufferPos = (Int_t *)outputPtr; 
+  Int_t nSamples = 0;
+  UInt_t specification = 0;
+  bool droppedRaw = true;
+  if(fDoPushRawData) {droppedRaw = false;}
+  
   for( ndx = 0; ndx < evtData.fBlockCnt; ndx++ )
     {
       iter = blocks+ndx;
+      if ( iter->fDataType != AliHLTPHOSDefinitions::fgkDDLPackedRawDataType )
+       {
+         continue; 
+       }
+
+      Int_t tmpChannelCnt     = 0;
       mysize = 0;
       offset = tSize;
+      Int_t crazyness = 0;
+      mysize += sizeof(AliHLTPHOSRcuCellEnergyDataStruct);
+      tSize += mysize;
 
-      if ( iter->fDataType != AliHLTPHOSDefinitions::gkDDLPackedRawDataType )
+      if(tSize > size)
        {
-         continue;
-       }
+         HLTError("Buffer overflow: Trying to write data of size: %d bytes. Output buffer available: %d bytes.", tSize, size);
+         return -ENOBUFS;
+       }  
 
-      fRawMemoryReader->SetMemory( reinterpret_cast<UChar_t*>( iter->fPtr ), iter->fSize );
-      fAnalyzerPtr->SetData(fTmpChannelData);
+      specification = specification|iter->fSpecification;
+      fDecoderPtr->SetMemory(reinterpret_cast<UChar_t*>( iter->fPtr ), iter->fSize);
+      fDecoderPtr->Decode();
       fOutPtr =  (AliHLTPHOSRcuCellEnergyDataStruct*)outBPtr;
-      mysize += sizeof(AliHLTPHOSRcuCellEnergyDataStruct);
       fOutPtr->fRcuX = fRcuX;
       fOutPtr->fRcuZ = fRcuZ;
-      fOutPtr->fModuleID = fModuleID;
-      tmpChannelCnt = 0;
-
-      while(fPHOSRawStream->Next())
-       {
-         if (fPHOSRawStream->IsNewHWAddress())
-           {
-             if(processedChannels > 0)
+      fOutPtr->fModuleID =fModuleID;
+      
+      rawDataBufferPos += (tSize)/sizeof(Int_t); 
+           
+      while( fDecoderPtr->NextChannel(fAltroDataPtr) == true )
+       {          
+         FillDataArray(fTmpChannelData, fAltroDataPtr, tmpChannelCnt); 
+
+         if(  fAltroDataPtr->GetDataSize() != 0 )
+            {
+             GetFirstBunch(fAltroDataPtr, fAltroBunchPtr);
+             nSamples = fAltroBunchPtr->GetBunchSize();
+             //              cout <<__FILE__ <<" : " <<__LINE__  << ",  the size of the first bunch is " << nSamples <<endl;
+             crazyness = fSanityInspectorPtr->CheckInsanity((const UInt_t*)fAltroBunchPtr->GetData(), (const Int_t)(fAltroBunchPtr->GetBunchSize()));
+             fAnalyzerPtr->SetData(fAltroBunchPtr->GetData(), fAltroBunchPtr->GetBunchSize());   
+             fAnalyzerPtr->Evaluate(0, fAltroBunchPtr->GetBunchSize());  
+             fOutPtr->fValidData[tmpChannelCnt].fZ  = fMapperPtr->fHw2geomapPtr[fAltroDataPtr->GetHadd()].fZRow;
+             fOutPtr->fValidData[tmpChannelCnt].fX  = fMapperPtr->fHw2geomapPtr[fAltroDataPtr->GetHadd()].fXCol; 
+             fOutPtr->fValidData[tmpChannelCnt].fGain  = fMapperPtr->fHw2geomapPtr[fAltroDataPtr->GetHadd()].fGain; 
+                     
+             if(fUseBaselineSubtraction)
                {
-                 fAnalyzerPtr->SetData(fTmpChannelData);
-                 fAnalyzerPtr->Evaluate(0, sampleCnt);
-                 fOutPtr->fValidData[tmpChannelCnt].fGain = tmpGain;
-                 fOutPtr->fValidData[tmpChannelCnt].fZ  = tmpZ;
-                 fOutPtr->fValidData[tmpChannelCnt].fX  = tmpX; 
-                 fOutPtr->fValidData[tmpChannelCnt].fEnergy  = (float)fAnalyzerPtr->GetEnergy();
-                 fOutPtr->fValidData[tmpChannelCnt].fTime    = (float)fAnalyzerPtr->GetTiming();
-                 ResetDataPtr(tmpStartIndex, sampleCnt);
-                 tmpChannelCnt ++;
-                 sampleCnt = 0;
+                 baseline = fBaselines[fOutPtr->fValidData[tmpChannelCnt].fX][fOutPtr->fValidData[tmpChannelCnt].fZ][ fOutPtr->fValidData[tmpChannelCnt].fGain];
                }
+                     
+             fOutPtr->fValidData[tmpChannelCnt].fEnergy  = (float)fAnalyzerPtr->GetEnergy() - baseline;
+             fOutPtr->fValidData[tmpChannelCnt].fTime    = (float)fAnalyzerPtr->GetTiming();
+             fOutPtr->fValidData[tmpChannelCnt].fCrazyness = (int)crazyness;
 
-             tmpMod  = (AliHLTUInt8_t)fPHOSRawStream->GetModule() ;
-             tmpX  =(AliHLTUInt8_t)fPHOSRawStream->GetRow() - fRcuXOffset;
-             tmpZ  =(AliHLTUInt8_t)fPHOSRawStream->GetColumn() - fRcuZOffset;
-             tmpGain =  fPHOSRawStream->IsLowGain(); 
-             processedChannels ++;
-           }
-         
-         if(sampleCnt == 0)
-           {
-             tmpStartIndex = fPHOSRawStream->GetTime();
+             if(fDoPushRawData == true && droppedRaw == false)
+               {
+                 int tmpsize = fTmpChannelData[0];
+                 //      cout << __FILE__ << ":" << __LINE__ << "channel = " << tmpChannelCnt <<  " size  ="<< tmpsize << endl;
+                 mysize += (tmpsize + 1)*sizeof(Int_t);
+                 tSize += (tmpsize  + 1)*sizeof(Int_t);;
+
+                 if(tSize > size)
+                   {
+                     HLTError("Buffer overflow: Trying to write data of size: %d bytes. Output buffer available: %d bytes. Dropping raw data.", tSize, size);
+                     droppedRaw = true;
+                     tSize -= mysize;
+                   }
+                 else
+                   {
+                     *rawDataBufferPos = tmpsize;
+                     
+                     for(int sample = 0; sample < tmpsize; sample++)
+                       {
+                         rawDataBufferPos++;
+                         *(rawDataBufferPos) = fTmpChannelData[sample]; 
+                       }
+                     rawDataBufferPos++;
+                             
+                   }
+               }
+             tmpChannelCnt ++;
            }
-         
-         fTmpChannelData[fPHOSRawStream->GetTime()] =  fPHOSRawStream->GetSignal();
-         sampleCnt ++;
        }
 
-      tmpChannelCnt ++;
-      fAnalyzerPtr->SetData(fTmpChannelData);
-      fAnalyzerPtr->Evaluate(0, sampleCnt);
-      fOutPtr->fValidData[tmpChannelCnt].fGain = tmpGain;
-      fOutPtr->fValidData[tmpChannelCnt].fZ  = tmpZ;
-      fOutPtr->fValidData[tmpChannelCnt].fX  = tmpX; 
-      fOutPtr->fValidData[tmpChannelCnt].fEnergy  = fAnalyzerPtr->GetEnergy();
-      fOutPtr->fValidData[tmpChannelCnt].fTime    = fAnalyzerPtr->GetTiming();
-      ResetDataPtr(tmpStartIndex, sampleCnt);
-
-      sampleCnt = 0;
-
-      fOutPtr->fCnt =  tmpChannelCnt;
-      AliHLTComponentBlockData bd;
-      FillBlockData( bd );
-      bd.fOffset = offset;
-      bd.fSize = mysize;
-      bd.fDataType = AliHLTPHOSDefinitions::gkCellEnergyDataType;
-      bd.fSpecification = 0xFFFFFFFF;
-      outputBlocks.push_back( bd );
-      tSize += mysize;
+      if(fDoPushRawData && droppedRaw == false)
+       {
+         fOutPtr->fHasRawData = true;
+       }
+      else
+       {
+         fOutPtr->fHasRawData = false;
+       }
+
+      fOutPtr->fCnt  = tmpChannelCnt;
+      fOutPtr->fSize = mysize;
+      AliHLTComponentBlockData bdCellEnergy;
+      FillBlockData( bdCellEnergy );
+      bdCellEnergy.fOffset = offset;
+      bdCellEnergy.fSize = mysize;
+      bdCellEnergy.fDataType = AliHLTPHOSDefinitions::fgkCellEnergyDataType;
+      bdCellEnergy.fSpecification = specification;
+      outputBlocks.push_back( bdCellEnergy );
       outBPtr += mysize;
-      if( tSize > size )
-       {
-         cout <<"kHLTLogFatal, HLT::AliHLTPHOSRawAnalyzerComponent::DoEvent Too much data Data written over allowed buffer. Amount written:" << tSize << " allowed" << size << endl;
-         Logging( kHLTLogFatal, "HLT::AliHLTPHOSRawAnalyzerComponent::DoEvent", "Too much data",
-                  "Data written over allowed buffer. Amount written: %lu, allowed amount: %lu."
-                  , tSize, size );
-         return EMSGSIZE;
-       }
 
+      if( tSize > size )
+       {
+         Logging( kHLTLogFatal, "HLT::AliHLTPHOSRawAnalyzerComponent::DoEvent", "Too much data",
+                  "Data written over allowed buffer. Amount written: %lu, allowed amount: %lu."
+                  , tSize, size );
+         return EMSGSIZE;
+       }
+      
     }
   
-  fgEventCount++; 
-
-  if(fPrintInfo == kTRUE)
-    {
-      if(fgEventCount%fPrintInfoFrequncy == 0)
-       {
-         cout <<"Analyzing event " <<  fgEventCount  << "for Equippment " << fEquippmentID << endl; 
-       }  
-    }
-  size = tSize;
+  //  *rawDataBufferPos = 0;  
+  fPhosEventCount++; 
   return 0;
 }//end DoEvent
 
@@ -276,225 +344,109 @@ int AliHLTPHOSRawAnalyzerComponent::DoEvent( const AliHLTComponentEventData& evt
 
 int
 AliHLTPHOSRawAnalyzerComponent::DoInit( int argc, const char** argv )
-{
-  /// See base class for documentation
+{ 
+  //!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+  // fAnalyzerPtr->SetCorrectBaselineUsingFirstFiveSamples();
+  //!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
+
+  //See base class for documentation
   fSendChannelData = kFALSE;
   fPrintInfo = kFALSE;
-  Reset();
-  fRawMemoryReader = new AliRawReaderMemory();
-  fPHOSRawStream = new  AliCaloRawStream(fRawMemoryReader,"PHOS");
-  fPHOSRawStream->SetOldRCUFormat(kFALSE);
   int iResult=0;
   TString argument="";
-  Bool_t isSetEquippmentID = kFALSE;
-
-  for(int i=0; i<argc && iResult>=0; i++) 
-    {
-      argument=argv[i];
-      
-      if (argument.IsNull()) 
-       {
-         continue;
-       }
-                         
-    if (argument.CompareTo("-equipmentID") == 0) 
-       {
-         cout << "AliHLTPHOSRawAnalyzerComponent:DoInit  argument = -equipmentID   "  <<endl;  
-         if(i+1 <= argc)
-           {
-             fEquippmentID = atoi(argv[i+1]);
-             cout << "AliHLTPHOSRawAnalyzerComponent:DoInit  setting equippment ID to  " << fEquippmentID <<endl;
-             fRawMemoryReader->SetEquipmentID(fEquippmentID); 
-             SetEquippmentID(fEquippmentID);
-             SetCoordinates(fEquippmentID);
-             isSetEquippmentID = kTRUE;
-           }
-         else
-           {
-              iResult= -1;
-              Logging( kHLTLogFatal, "HLT::AliHLTPHOSRcuHistogramProducerComponent::DoInt( int argc, const char** argv )", "Missing argument",
-                       "The argument -equippmentID expects a number");
-              return  iResult;   
-           }
-       }
-      
-    
-    if (argument.CompareTo("-datatype") == 0) 
-      {
-       if(i+1 <= argc)
-         {
-           argument=argv[i+1];
-           if(argument.CompareTo("channeldata") == 0)
-             {
-               cout << "AliHLTPHOSRawAnalyzerComponent::DoIni  setting sendChannelData = kTRUE "<< endl; 
-               fSendChannelData = kTRUE;
-             }
-         }     
-      }
-
-    if (argument.CompareTo("-printinfo") == 0) 
-      {
-       if(i+1 <= argc)
-         {
-           argument=argv[i+1];
-           fPrintInfoFrequncy = atoi(argv[i+1]);
-           fPrintInfo = kTRUE;
-           cout << "AliHLTPHOSRawAnalyzerComponent::DoIni  setting printinfo = kTRUE, with update frequency every  "<< fPrintInfoFrequncy << "th event" <<endl; 
-         }
-       else
-         {
-           cout << "WARNING: asking for event info, but no update frequency is specified, otipn is ignored" << endl;
-         }
-      }
+  const int nSigmas = 3;
+  fMapperPtr = new AliHLTPHOSMapper();
  
+  if(fMapperPtr->GetIsInitializedMapping() == false)
+    {
+      Logging(kHLTLogFatal, __FILE__ , IntToChar(  __LINE__ ) , "AliHLTPHOSMapper::Could not initial mapping from file %s, aborting", fMapperPtr->GetFilePath());
+      return -4;
     }
 
-
-  if(isSetEquippmentID == kFALSE)
+  char tmpbaselinfile[256];
+  if(fUtilitiesPtr->ScanSingleNameArgument(argc, argv, "-baselinefile", tmpbaselinfile) == true  )
     {
-      Logging( kHLTLogFatal, "HLT::AliHLTPHOSRcuHistogramProducerComponent::DoInt( int argc, const char** argv )", "Missing argument",
-              "The argument equippmentID is not set: set it with a component argumet like this: -equippmentID  <number>");
-      iResult = -2; 
+      SetBaselines(tmpbaselinfile);
     }
-
-  return 0;
-}
-
-
-void
-AliHLTPHOSRawAnalyzerComponent::DumpData(int gain) const
-{
-  //Dumping data to std out
-  for(int mod = 0; mod < N_MODULES; mod ++)
+  
+  char tmpSelectiveThresholdfile[256];
+  if(fUtilitiesPtr->ScanSingleNameArgument(argc, argv, "-baselinefile", tmpSelectiveThresholdfile) == true  )
     {
-      printf("\n ***********  MODULE %d ************\n", mod);
-      for(int row = 0; row <  N_ROWS_MOD; row ++)
-       {
-         for(int col = 0; col <  N_COLUMNS_MOD; col ++)
-           {
-             if( fMaxValues[mod][row][col][0] != 0)
-               { 
-                 cout << fMaxValues[mod][row][col][gain] << "\t";
-               }
-           }
-       } 
+      fDoSelectiveReadOut = true;
+      SetSelectiveReadOutThresholds(tmpSelectiveThresholdfile, nSigmas);
     }
-}
 
+  //fDoSelectiveReadOut = fUtilitiesPtr->ScanSingleNameArgument(argc, argv, "-selectivereadout");
 
-void
-AliHLTPHOSRawAnalyzerComponent::DumpChannelData(Double_t *data) const
-{
-  //shutting up the code checker 
-     cout << endl;
-      for(int i=0; i<  ALTRO_MAX_SAMPLES; i++)
-       {
-         if (data[i] != 0)
-           {
-             cout <<i <<"\t";
-           }
-       }
-      cout << endl;
-      
-      for(int i=0; i<  ALTRO_MAX_SAMPLES; i++)
-       {
-         if (data[i] != 0)
-           {
-             cout <<data[i] <<"\t";
-           }
-       }
-      
-      cout << endl;
+  fDoPushRawData = fUtilitiesPtr->ScanSingleArgument(argc, argv, "-pushrawdata");
+
+  fDoCheckDataSize = fUtilitiesPtr->ScanSingleArgument(argc, argv, "-checkdatasize");
+  iResult = ScanArguments(argc, argv);
+  return iResult;
 }
 
 
 void
-AliHLTPHOSRawAnalyzerComponent::Reset()
+AliHLTPHOSRawAnalyzerComponent::Reset(AliHLTPHOSRcuCellEnergyDataStruct* /* cellDataPtr */)
 {
-  //shutting code checker
-  for(int mod = 0; mod < N_MODULES; mod ++)
-    {
-      for(int row = 0; row < N_ROWS_MOD; row ++)
-       {
-         for(int col = 0; col < N_COLUMNS_MOD; col ++)
-           {
-             for(int gain = 0; gain < N_GAINS; gain ++ )
-               {
-                 fMaxValues[mod][row][col][gain] = 0;
-               }
-           }
-       }
-    }
-
   ResetDataPtr(0, ALTRO_MAX_SAMPLES);
-
 } // end Reset
 
+
 void
 AliHLTPHOSRawAnalyzerComponent::ResetDataPtr(int startindex, int sampleCnt)
 {
-  //shutting up the code checker
+  //comment
   for(int i = startindex ; i< sampleCnt; i++)
     {
       fTmpChannelData[i] = 0;
     }
 }
 
-void 
-AliHLTPHOSRawAnalyzerComponent::SetEquippmentID(AliHLTUInt16_t id)
-{
-  //shutting up the code checker
-  fEquippmentID = id;
-}
-
-
-const AliHLTUInt16_t
-AliHLTPHOSRawAnalyzerComponent::GetEquippmentID() const
-{
-  //shutting up the code checker
-  return  fEquippmentID;
-}
 
 void 
-AliHLTPHOSRawAnalyzerComponent::SetCoordinates(AliHLTUInt16_t equippmentID)
+AliHLTPHOSRawAnalyzerComponent::SetBaselines(const char* file)
 {
- //shutting up the code checker
-  int rcuIndex =  (fEquippmentID - 1792)%N_RCUS_PER_MODULE;
-  fModuleID = (fEquippmentID  -1792 -rcuIndex)/N_RCUS_PER_MODULE;
-  
-  if(rcuIndex == 0)
+  //comment
+  fUseBaselineSubtraction = true;
+  AliHLTPHOSBaseline *baseline = 0;
+  TFile *baselineFile = TFile::Open(file);
+  TTree *baselineTree = (TTree*)baselineFile->Get("baselineTree");
+  TClonesArray *baselineArray = new TClonesArray("AliHLTPHOSBaseline", 7168);
+  baselineTree->SetBranchAddress("Baselines", &baselineArray);
+  baselineTree->GetEntry(0);
+  for(Int_t i = 0; i < baselineArray->GetEntriesFast(); i++)
     {
-      fRcuX = 0; 
-      fRcuZ = 0;
+      baseline = (AliHLTPHOSBaseline*)baselineArray->At(i);
+      if((baseline->GetX() < (Int_t)((fRcuX + 1)*N_XCOLUMNS_RCU)) && (baseline->GetX() >= (Int_t)(fRcuX*N_XCOLUMNS_RCU)))
+       {
+         if((baseline->GetZ() < (Int_t)((fRcuZ + 1)*N_ZROWS_RCU)) && (baseline->GetZ() >= (Int_t)(fRcuZ*N_ZROWS_RCU)))
+           {
+             fBaselines[baseline->GetX() - fRcuX*N_XCOLUMNS_RCU][baseline->GetZ() - fRcuZ*N_ZROWS_RCU][baseline->GetGain()] = baseline->GetBaseline();
+           }
+       }
     }
+  baselineFile->Close();
+  delete baselineFile;
+  baselineFile = 0;
+}
 
-  if(rcuIndex == 1)
-    {
-      fRcuX = 0; 
-      fRcuZ = 1;
-    }
-  if(rcuIndex == 2)
-    {
-      fRcuX = 1; 
-      fRcuZ = 0;
-    }
+void 
+AliHLTPHOSRawAnalyzerComponent::SetSelectiveReadOutThresholds(const char* filepath, Int_t nSigmas)
+{
+  //See header file for documentation
+  TFile *histFile = new TFile(filepath);
+  TH2F *lgHist = (TH2F*)histFile->Get("RMSLGMapHist");
+  TH2F *hgHist = (TH2F*)histFile->Get("RMSHGMapHist");
 
-  if(rcuIndex == 3)
+  for(int x = 0; x < N_XCOLUMNS_MOD; x++)
     {
-      fRcuX = 1; 
-      fRcuZ = 1;
+      for(int z = 0; z < N_ZROWS_MOD; z++)
+       {
+         fSelectiveReadOutThresholds[x][z][LOW_GAIN] = lgHist->GetBinContent(x, z) * nSigmas;
+         fSelectiveReadOutThresholds[x][z][HIGH_GAIN] = hgHist->GetBinContent(x, z) * nSigmas;
+       }
     }
-
-  fRcuZOffset =  N_ZROWS_RCU*fRcuZ;
-  fRcuXOffset =  N_XCOLUMNS_RCU*fRcuX;
-
-  cout <<"********InitInfo************"<< endl;
-  cout <<"AliHLTPHOSRawAnalyzerComponent::SetCoordinate"<< endl;
-  cout <<"Equpippment ID =\t"<< fEquippmentID <<endl;
-  cout <<"Module ID =\t"<<  (int)fModuleID<<endl;
-  cout <<"RCUX =\t\t" << (int)fRcuX << endl;
-  cout <<"RCUZ =\t\t" << (int)fRcuZ << endl;
-  cout <<"RcuZOffset = \t" <<  (int)fRcuZOffset << endl;
-  cout <<"RcuXOffset = \t" <<  (int)fRcuXOffset << endl << endl;
 }