* provided "as is" without express or implied warranty. *
**************************************************************************/
+/* $Id$ */
//---------------------------------------------------------------------
// FastJet v2.3.4 finder algorithm interface
// Authors: Rafael.Diaz.Valdes@cern.ch
// Magali.estienne@subatech.in2p3.fr (neutral part + bg subtraction option)
//
+// ** 2011 magali.estienne@subatech.in2p3.fr & alexandre.shabetai@cern.ch
+// new implementation of background subtraction
+// allowing to subtract bkg using a different algo than the one used for signal jets
//---------------------------------------------------------------------
-
#include <Riostream.h>
-#include <TLorentzVector.h>
-#include <TFile.h>
-#include <TH1F.h>
-#include <TH2F.h>
-#include <TArrayF.h>
-#include <TClonesArray.h>
#include "AliFastJetFinder.h"
#include "AliFastJetHeaderV1.h"
-#include "AliJetReaderHeader.h"
-#include "AliJetReader.h"
-#include "AliJetUnitArray.h"
#include "AliFastJetInput.h"
-#include "AliJetBkg.h"
+#include "AliFastJetBkg.h"
#include "AliAODJetEventBackground.h"
-#include "AliAODTrack.h"
+#include "AliAODJet.h"
#include "fastjet/PseudoJet.hh"
#include "fastjet/ClusterSequenceArea.hh"
#include "fastjet/AreaDefinition.hh"
#include "fastjet/JetDefinition.hh"
-// get info on how fastjet was configured
-#include "fastjet/config.h"
-
-#ifdef ENABLE_PLUGIN_SISCONE
-#include "fastjet/SISConePlugin.hh"
-#endif
-#include<sstream> // needed for internal io
#include<vector>
-#include <cmath>
using namespace std;
-
ClassImp(AliFastJetFinder)
-
-//____________________________________________________________________________
+////////////////////////////////////////////////////////////////////////
AliFastJetFinder::AliFastJetFinder():
AliJetFinder(),
fInputFJ(new AliFastJetInput()),
- fJetBkg(new AliJetBkg())
+ fJetBkg(new AliFastJetBkg())
{
// Constructor
}
//____________________________________________________________________________
-
AliFastJetFinder::~AliFastJetFinder()
{
// destructor
- delete fInputFJ; fInputFJ = 0;
- delete fJetBkg; fJetBkg = 0;
+ delete fInputFJ;
+ delete fJetBkg;
+
}
//______________________________________________________________________________
void AliFastJetFinder::FindJets()
{
+ // runs a FASTJET based algo
//pick up fastjet header
AliFastJetHeaderV1 *header = (AliFastJetHeaderV1*)fHeader;
Int_t debug = header->GetDebug(); // debug option
Bool_t bgMode = header->GetBGMode(); // choose to subtract BG or not
- if(debug)cout<<"----------in AliFastJetFinder::FindJets() ------------------"<<endl;
+ if(debug>0) cout<<"----------in AliFastJetFinder::FindJets() ------------------"<<endl;
- // check if we are reading AOD jets
- TRefArray *refs = 0;
- Bool_t fromAod = !strcmp(fReader->ClassName(),"AliJetAODReader");
- if (fromAod) { refs = fReader->GetReferences(); }
-
// RUN ALGORITHM
// read input particles -----------------------------
vector<fastjet::PseudoJet> inputParticles=fInputFJ->GetInputParticles();
if(inputParticles.size()==0){
- if(debug)Printf("%s:%d No input particles found, skipping event",(char*)__FILE__,__LINE__);
+ if(debug>0) Printf("%s:%d No input particles found, skipping event",(char*)__FILE__,__LINE__);
return;
}
// create an object that represents your choice of jet algorithm, and
// the associated parameters
double rParam = header->GetRparam();
+ double rBkgParam = header->GetRparamBkg();
fastjet::Strategy strategy = header->GetStrategy();
fastjet::RecombinationScheme recombScheme = header->GetRecombScheme();
fastjet::JetAlgorithm algorithm = header->GetAlgorithm();
// create an object that specifies how we to define the area
fastjet::AreaDefinition areaDef;
- double ghostEtamax = header->GetGhostEtaMax();
- double ghostArea = header->GetGhostArea();
+ double ghostEtamax = header->GetGhostEtaMax();
+ double ghostArea = header->GetGhostArea();
int activeAreaRepeats = header->GetActiveAreaRepeats();
// now create the object that holds info about ghosts
fastjet::AreaType areaType = header->GetAreaType();
areaDef = fastjet::AreaDefinition(areaType,ghostSpec);
+ //***************************** JETS FINDING
+ // run the jet clustering with the above jet definition
+ fastjet::ClusterSequenceArea clust_seq(inputParticles, jetDef, areaDef);
+ vector<fastjet::PseudoJet> jets;
-
-
- if(bgMode) // BG subtraction!!!!!!!!!! Not entering here
+ if(bgMode) // Do BG subtraction directly with the same algorithm (cambridge or kt) for jet signal and background
{
- //***************************** JETS FINDING AND EXTRACTION
+ //***************************** JETS FINDING FOR RHO ESTIMATION
// run the jet clustering with the above jet definition
- fastjet::ClusterSequenceArea clust_seq(inputParticles, jetDef, areaDef);
+ fastjet::JetAlgorithm algorithmBkg = header->GetBGAlgorithm();
+ fastjet::JetDefinition jetDefBkg(algorithmBkg, rBkgParam, recombScheme, strategy);
+ fastjet::ClusterSequenceArea clust_seq_bkg(inputParticles, jetDefBkg, areaDef);
// save a comment in the header
-
TString comment = "Running FastJet algorithm with the following setup. ";
comment+= "Jet definition: ";
comment+= TString(jetDef.description());
+ comment+= "Jet bckg definition: ";
+ comment+= TString(jetDefBkg.description());
comment+= ". Area definition: ";
comment+= TString(areaDef.description());
comment+= ". Strategy adopted by FastJet: ";
comment+= TString(clust_seq.strategy_string());
header->SetComment(comment);
- if(debug){
+ if(debug>0){
cout << "--------------------------------------------------------" << endl;
cout << comment << endl;
cout << "--------------------------------------------------------" << endl;
}
- //header->PrintParameters();
-
- // extract the inclusive jets with pt > ptmin, sorted by pt
+ // extract the inclusive jets sorted by pt
double ptmin = header->GetPtMin();
- vector<fastjet::PseudoJet> inclusiveJets = clust_seq.inclusive_jets(ptmin);
-
- //cout << "Number of unclustered particles: " << clust_seq.unclustered_particles().size() << endl;
-
+ vector<fastjet::PseudoJet> inclusiveJets = clust_seq.inclusive_jets();
//subtract background // ===========================================
// set the rapididty , phi range within which to study the background
double phiMax = header->GetPhiMax();
double phiMin = header->GetPhiMin();
fastjet::RangeDefinition range(rapMin, rapMax, phiMin, phiMax);
-
- // subtract background
- vector<fastjet::PseudoJet> subJets = clust_seq.subtracted_jets(range,ptmin);
-
- // print out
- //cout << "Printing inclusive sub jets with pt > "<< ptmin<<" GeV\n";
- //cout << "---------------------------------------\n";
- //cout << endl;
- //printf(" ijet rap phi Pt area +- err\n");
+
+ // Extract rho and sigma
+ Double_t rho = 0.;
+ Double_t sigma = 0.;
+ Double_t meanarea = 0.;
+ Bool_t kUse4VectorArea = header->Use4VectorArea();
+ vector<fastjet::PseudoJet> bkgJets = clust_seq_bkg.inclusive_jets();
+ clust_seq_bkg.get_median_rho_and_sigma(bkgJets,range, kUse4VectorArea, rho, sigma, meanarea, false);
+
+ // subtract background and extract jets bkg subtracted
+ vector<fastjet::PseudoJet> subJets = clust_seq.subtracted_jets(rho,ptmin);
// sort jets into increasing pt
- vector<fastjet::PseudoJet> jets = sorted_by_pt(subJets);
- for (size_t j = 0; j < jets.size(); j++) { // loop for jets
-
- double area = clust_seq.area(jets[j]);
- double areaError = clust_seq.area_error(jets[j]);
-
- if(debug) printf("Jet found %5d %9.5f %8.5f %10.3f %8.3f +- %6.3f\n", (Int_t)j,jets[j].rap(),jets[j].phi(),jets[j].perp(), area, areaError);
-
- // go to write AOD info
- AliAODJet aodjet (jets[j].px(), jets[j].py(), jets[j].pz(), jets[j].E());
- //cout << "Printing jet " << endl;
- if(debug) aodjet.Print("");
- //cout << "Adding jet ... " ;
- AddJet(aodjet);
- //cout << "added \n" << endl;
-
- }
- }
-
-
-
-
+ jets = sorted_by_pt(subJets);
+ }
else { // No BG subtraction!!!!!!!! Default header is bgmode=0.
-
- TClonesArray* fUnit = fReader->GetUnitArray(); //Big mmentum array
- if(fUnit == 0) { cout << "Could not get the momentum array" << endl; return; }
- Int_t nIn = fUnit->GetEntries();
-
-
- //fastjet::ClusterSequence clust_seq(inputParticles, jetDef);
- fastjet::ClusterSequenceArea clust_seq(inputParticles, jetDef, areaDef);
-
- // save a comment in the header
+ // save a comment in the header
TString comment = "Running FastJet algorithm with the following setup. ";
comment+= "Jet definition: ";
comment+= TString(jetDef.description());
comment+= ". Strategy adopted by FastJet: ";
comment+= TString(clust_seq.strategy_string());
header->SetComment(comment);
- if(debug){
+ if(debug>0){
cout << "--------------------------------------------------------" << endl;
cout << comment << endl;
cout << "--------------------------------------------------------" << endl;
}
- //header->PrintParameters();
- // extract the inclusive jets with pt > ptmin, sorted by pt
+ // extract the inclusive jets with pt > ptmin, sorted by pt
double ptmin = header->GetPtMin();
vector<fastjet::PseudoJet> inclusiveJets = clust_seq.inclusive_jets(ptmin);
- //cout << "Number of unclustered particles: " << clust_seq.unclustered_particles().size() << endl;
-
- vector<fastjet::PseudoJet> jets = sorted_by_pt(inclusiveJets); // Added by me
- for (size_t j = 0; j < jets.size(); j++) { // loop for jets // Added by me
+ jets = sorted_by_pt(inclusiveJets);
+
+ }
+
+ for (size_t j = 0; j < jets.size(); j++) { // loop for jets
+
+ double area = clust_seq.area(jets[j]);
+ double areaError = clust_seq.area_error(jets[j]);
+
+ if(debug>0) printf("Jet found %5d %9.5f %8.5f %10.3f \n",(Int_t)j,jets[j].rap(),jets[j].phi(),jets[j].perp());
+
+ vector<fastjet::PseudoJet> constituents = clust_seq.constituents(jets[j]);
+ int nCon= constituents.size();
+ TArrayI ind(nCon);
- if(debug) printf("Jet found %5d %9.5f %8.5f %10.3f \n",(Int_t)j,jets[j].rap(),jets[j].phi(),jets[j].perp());
-
- vector<fastjet::PseudoJet> constituents = clust_seq.constituents(jets[j]);
- int nCon= constituents.size();
- TArrayI ind(nCon);
- Double_t area=clust_seq.area(jets[j]);
- // go to write AOD info
- AliAODJet aodjet (jets[j].px(), jets[j].py(), jets[j].pz(), jets[j].E());
- aodjet.SetEffArea(area,0);
- //cout << "Printing jet " << endl;
- if(debug) aodjet.Print("");
- Int_t count=0;
- for (int i=0; i < nCon; i++)
- {
+ if ((jets[j].eta() > (header->GetJetEtaMax())) ||
+ (jets[j].eta() < (header->GetJetEtaMin())) ||
+ (jets[j].phi() > (header->GetJetPhiMax())) ||
+ (jets[j].phi() < (header->GetJetPhiMin())) ||
+ (jets[j].perp() < header->GetPtMin())) continue; // acceptance eta range and etmin
+
+ // go to write AOD info
+ AliAODJet aodjet (jets[j].px(), jets[j].py(), jets[j].pz(), jets[j].E());
+ aodjet.SetEffArea(area,areaError);
+ //cout << "Printing jet " << endl;
+ if(debug>0) aodjet.Print("");
+
+ for (int i=0; i < nCon; i++)
+ {
fastjet::PseudoJet mPart=constituents[i];
ind[i]=mPart.user_index();
- // cout<<i<<" index="<<ind[i]<<endl;
-
- //internal loop over all the unit cells
- Int_t ipart = 0;
- // count=0;
- for(Int_t ii=0; ii<nIn; ii++)
+
+ // Jet constituents (charged tracks) added to the AliAODJet
+ AliJetCalTrkEvent* calEvt = GetCalTrkEvent();
+ for(Int_t itrack=0; itrack<calEvt->GetNCalTrkTracks(); itrack++)
{
- AliJetUnitArray *uArray = (AliJetUnitArray*)fUnit->At(ii);
- if(uArray->GetUnitEnergy()>0.){
- uArray->SetUnitTrackID(ipart);//used to have the index available in AliJEtBkg
- if(ipart==ind[i]){
- TRefArray* trackArray = (TRefArray*)uArray->GetUnitTrackRef();
- Int_t tracksInCell = trackArray->GetEntries();
- for(int ji = 0; ji < tracksInCell; ji++){
- AliAODTrack * track = (AliAODTrack*)trackArray->At(ji);
- aodjet.AddTrack(track);
- }
-
- count++;
+ if(itrack==ind[i])
+ {
+ TObject *track = calEvt->GetCalTrkTrack(itrack)->GetTrackObject();
+ aodjet.AddTrack(track);
}
- ipart++;
- }
}
- }
+ } // End loop on Constituents
-
-
- AddJet(aodjet);
+ AddJet(aodjet);
- } // end loop for jets
- }
+ } // end loop for jets
}
//____________________________________________________________________________
void AliFastJetFinder::RunTest(const char* datafile)
-
{
+ // This simple test run the kt algorithm for an ascii file testdata.dat
- // This simple test run the kt algorithm for an ascii file testdata.dat
- // read input particles -----------------------------
+ // read input particles -----------------------------
vector<fastjet::PseudoJet> inputParticles;
Float_t px,py,pz,en;
ifstream in;
// this file has 3 columns of float data
in.open(datafile);
while (1) {
- in >> px >> py >> pz >> en;
- if (!in.good()) break;
- //printf("px=%8f, py=%8f, pz=%8fn",px,py,pz);
- nlines++;
- inputParticles.push_back(fastjet::PseudoJet(px,py,pz,en));
- }
- //printf(" found %d pointsn",nlines);
- in.close();
- //////////////////////////////////////////////////
+ in >> px >> py >> pz >> en;
+ if (!in.good()) break;
+ //printf("px=%8f, py=%8f, pz=%8fn",px,py,pz);
+ nlines++;
+ inputParticles.push_back(fastjet::PseudoJet(px,py,pz,en));
+ }
+ //printf(" found %d pointsn",nlines);
+ in.close();
+ //////////////////////////////////////////////////
// create an object that represents your choice of jet algorithm, and
// the associated parameters
fastjet::RecombinationScheme recombScheme = fastjet::BIpt_scheme;
fastjet::JetDefinition jetDef(fastjet::kt_algorithm, rParam, recombScheme, strategy);
-
-
// create an object that specifies how we to define the area
fastjet::AreaDefinition areaDef;
double ghostEtamax = 7.0;
double ghostArea = 0.05;
int activeAreaRepeats = 1;
-
// now create the object that holds info about ghosts
fastjet::GhostedAreaSpec ghostSpec(ghostEtamax, activeAreaRepeats, ghostArea);
// and from that get an area definition
areaDef = fastjet::AreaDefinition(fastjet::active_area,ghostSpec);
-
// run the jet clustering with the above jet definition
fastjet::ClusterSequenceArea clust_seq(inputParticles, jetDef, areaDef);
-
// tell the user what was done
cout << "--------------------------------------------------------" << endl;
cout << "Jet definition was: " << jetDef.description() << endl;
cout << "Area definition was: " << areaDef.description() << endl;
cout << "Strategy adopted by FastJet was "<< clust_seq.strategy_string()<<endl<<endl;
cout << "--------------------------------------------------------" << endl;
-
// extract the inclusive jets with pt > 5 GeV, sorted by pt
double ptmin = 5.0;
cout << "Number of unclustered particles: " << clust_seq.unclustered_particles().size() << endl;
-
//subtract background // ===========================================
// set the rapididty range within which to study the background
double rapMax = ghostEtamax - rParam;
printf(" ijet rap phi Pt area +- err\n");
for (size_t j = 0; j < jets.size(); j++) {
-
- double area = clust_seq.area(jets[j]);
+ double area = clust_seq.area(jets[j]);
double areaError = clust_seq.area_error(jets[j]);
-
printf("%5d %9.5f %8.5f %10.3f %8.3f +- %6.3f\n",(Int_t)j,jets[j].rap(),
jets[j].phi(),jets[j].perp(), area, areaError);
}
cout << endl;
// ================================================================
-
-
}
//____________________________________________________________________________
-
void AliFastJetFinder::WriteJHeaderToFile() const
{
+ // Write Jet Header to file
fHeader->Write();
-}
-
-//____________________________________________________________________________
-
-Float_t AliFastJetFinder::EtaToTheta(Float_t arg)
-{
- // return (180./TMath::Pi())*2.*atan(exp(-arg));
- return 2.*atan(exp(-arg));
-
}
//____________________________________________________________________________
-
-void AliFastJetFinder::InitTask(TChain *tree)
-{
-
- printf("Fast jet finder initialization ******************");
- fReader->CreateTasks(tree);
-
-}
-
-
Bool_t AliFastJetFinder::ProcessEvent()
{
- //
- // Process one event
- // from meomntum array
-
- Bool_t ok = fReader->FillMomentumArray();
-
- if (!ok) return kFALSE;
- fInputFJ->SetHeader(fHeader);
- fInputFJ->SetReader(fReader);
- fInputFJ->FillInput();
- // Jets
- FindJets();
-
- fJetBkg->SetHeader(fHeader);
- fJetBkg->SetReader(fReader);
- /*
- fJetBkg->SetFastJetInput(fInputFJ);
- Double_t bkg1=fJetBkg->BkgFastJet();
- Double_t bkg2=fJetBkg->BkgChargedFastJet();
- Double_t bkg3=fJetBkg->BkgFastJetCone(fAODjets);
- Double_t bkg4=fJetBkg->BkgRemoveJetLeading(fAODjets);
-
- fAODEvBkg->SetBackground(0,bkg1);
- fAODEvBkg->SetBackground(1,bkg2);
- fAODEvBkg->SetBackground(2,bkg3);
- fAODEvBkg->SetBackground(3,bkg4);
- */
- Reset();
- return kTRUE;
-
-}
-
-Bool_t AliFastJetFinder::ProcessEvent2()
-{
- //
// Process one event
// Charged only or charged+neutral jets
- //
-
- TRefArray* ref = new TRefArray();
- Bool_t procid = kFALSE;
- Bool_t ok = fReader->ExecTasks(procid,ref);
- // Delete reference pointer
- if (!ok) {delete ref; return kFALSE;}
-
- // Leading particles
fInputFJ->SetHeader(fHeader);
- fInputFJ->SetReader(fReader);
+ fInputFJ->SetCalTrkEvent(GetCalTrkEvent());
fInputFJ->FillInput();
- // Jets
- FindJets();
-
- fJetBkg->SetHeader(fHeader);
- fJetBkg->SetReader(fReader);
- fJetBkg->SetFastJetInput(fInputFJ);
-// Double_t bkg1=fJetBkg->BkgFastJet();
-// Double_t bkg2=fJetBkg->BkgChargedFastJet();
-// Double_t bkg3=fJetBkg->BkgFastJetCone(fAODjets);
-// Double_t bkg4=fJetBkg->BkgRemoveJetLeading(fAODjets);
-
-// fAODEvBkg->SetBackground(0,bkg1);
-// fAODEvBkg->SetBackground(1,bkg2);
-// fAODEvBkg->SetBackground(2,bkg3);
-// fAODEvBkg->SetBackground(3,bkg4);
-
- Int_t nEntRef = ref->GetEntries();
-
- for(Int_t i=0; i<nEntRef; i++)
- {
- // Reset the UnitArray content which were referenced
- ((AliJetUnitArray*)ref->At(i))->SetUnitTrackID(0);
- ((AliJetUnitArray*)ref->At(i))->SetUnitEnergy(0.);
- ((AliJetUnitArray*)ref->At(i))->SetUnitCutFlag(kPtSmaller);
- ((AliJetUnitArray*)ref->At(i))->SetUnitCutFlag2(kPtSmaller);
- ((AliJetUnitArray*)ref->At(i))->SetUnitSignalFlag(kBad);
- ((AliJetUnitArray*)ref->At(i))->SetUnitSignalFlagC(kTRUE,kBad);
- ((AliJetUnitArray*)ref->At(i))->SetUnitDetectorFlag(kTpc);
- ((AliJetUnitArray*)ref->At(i))->SetUnitFlag(kOutJet);
- ((AliJetUnitArray*)ref->At(i))->ClearUnitTrackRef();
-
- // Reset process ID
- AliJetUnitArray* uA = (AliJetUnitArray*)ref->At(i);
- uA->ResetBit(kIsReferenced);
- uA->SetUniqueID(0);
- }
+ // Find Jets
+ FindJets();
- // Delete the reference pointer
- ref->Delete();
- delete ref;
+ // Background
+ if(fAODEvBkg){
+ AliFastJetHeaderV1 *header = (AliFastJetHeaderV1*)fHeader;
- Reset();
+ fJetBkg->SetHeader(fHeader);
+ fJetBkg->SetFastJetInput(fInputFJ);
+
+ Int_t count = 0;
+ if(header->GetBkgFastJetb()){
+ Double_t sigma1 = 0 , meanarea1= 0, bkg1 = 0;
+ fJetBkg->BkgFastJetb(bkg1,sigma1,meanarea1);
+ fAODEvBkg->SetBackground(count,bkg1,sigma1,meanarea1);
+ count++;
+ }
+
+ if(header->GetBkgFastJetWoHardest()){
+ Double_t sigma2 = 0 , meanarea2 = 0, bkg2 = 0;
+ fJetBkg->BkgFastJetWoHardest(bkg2,sigma2,meanarea2);
+ fAODEvBkg->SetBackground(count,bkg2,sigma2,meanarea2);
+ count++;
+ }
+
+ }
+ Reset();
return kTRUE;
+
}
git://git.uio.no / u / mrichter / AliRoot.git / blobdiff