aliroot -b >& testMisalign.out << EOF
gAlice->Init("$ALICE_ROOT/MUON/Config.C");
-.x $ALICE_ROOT/MUON/MUONCheckMisAligner.C(0., 0.03, 0., 0.03, 0., 0.03, "FullMisAlignCDB");
+gGeoManager->Export("geometry.root");
+.L $ALICE_ROOT/MUON/MUONCheckMisAligner.C+
+MUONCheckMisAligner(0., 0.03, 0., 0.03, 0., 0.03, "FullMisAlignCDB");
.q
EOF
echo "Running alignment ..."
aliroot -b >& testAlign.out << EOF
-.x $ALICE_ROOT/MUON/MUONAlignment.C
+.L $ALICE_ROOT/MUON/MUONAlignment.C+
+MUONAlignment();
.q
EOF