/* $Id$ */
-//_________________________________________________________________________
-// Implementation version 1 of the clusterization algorithm
-//
-//*-- Author: Yves Schutz (SUBATECH)
+/* History of cvs commits:
+ *
+ * $Log$
+ * Revision 1.111 2007/08/08 12:11:28 kharlov
+ * Protection against uninitialized fQADM
+ *
+ * Revision 1.110 2007/08/07 14:16:00 kharlov
+ * Quality assurance added (Yves Schutz)
+ *
+ * Revision 1.109 2007/07/24 17:20:35 policheh
+ * Usage of RecoParam objects instead of hardcoded parameters in reconstruction.
+ * (See $ALICE_ROOT/PHOS/macros/BeamTest2006/RawReconstruction.C).
+ *
+ * Revision 1.108 2007/06/18 07:00:51 kharlov
+ * Bug fix for attempt to use AliPHOSEmcRecPoint after its deletion
+ *
+ * Revision 1.107 2007/05/25 14:12:26 policheh
+ * Local to tracking CS transformation added for CPV rec. points
+ *
+ * Revision 1.106 2007/05/24 13:01:22 policheh
+ * Local to tracking CS transformation invoked for each EMC rec.point
+ *
+ * Revision 1.105 2007/05/02 13:41:22 kharlov
+ * Mode protection against absence of calib.data from AliPHOSCalibData to AliPHOSClusterizerv1::GetCalibrationParameters()
+ *
+ * Revision 1.104 2007/04/27 16:55:53 kharlov
+ * Calibration stops if PHOS CDB objects do not exist
+ *
+ * Revision 1.103 2007/04/11 11:55:45 policheh
+ * SetDistancesToBadChannels() added.
+ *
+ * Revision 1.102 2007/03/28 19:18:15 kharlov
+ * RecPoints recalculation in TSM removed
+ *
+ * Revision 1.101 2007/03/06 06:51:27 kharlov
+ * Calculation of cluster properties dep. on vertex posponed to TrackSegmentMaker
+ *
+ * Revision 1.100 2007/01/10 11:07:26 kharlov
+ * Raw digits writing to file (B.Polichtchouk)
+ *
+ * Revision 1.99 2006/11/07 16:49:51 kharlov
+ * Corrections for next event switch in case of raw data (B.Polichtchouk)
+ *
+ * Revision 1.98 2006/10/27 17:14:27 kharlov
+ * Introduce AliDebug and AliLog (B.Polichtchouk)
+ *
+ * Revision 1.97 2006/08/29 11:41:19 kharlov
+ * Missing implementation of ctors and = operator are added
+ *
+ * Revision 1.96 2006/08/25 16:56:30 kharlov
+ * Compliance with Effective C++
+ *
+ * Revision 1.95 2006/08/11 12:36:26 cvetan
+ * Update of the PHOS code needed in order to read and reconstruct the beam test raw data (i.e. without an existing galice.root)
+ *
+ * Revision 1.94 2006/08/07 12:27:49 hristov
+ * Removing obsolete code which affected the event numbering scheme
+ *
+ * Revision 1.93 2006/08/01 12:20:17 cvetan
+ * 1. Adding a possibility to read and reconstruct an old rcu formatted raw data. This is controlled by an option of AliReconstruction and AliPHOSReconstructor. 2. In case of raw data processing (without galice.root) create the default AliPHOSGeometry object. Most likely this should be moved to the CDB
+ *
+ * Revision 1.92 2006/04/29 20:26:46 hristov
+ * Separate EMC and CPV calibration (Yu.Kharlov)
+ *
+ * Revision 1.91 2006/04/22 10:30:17 hristov
+ * Add fEnergy to AliPHOSDigit and operate with EMC amplitude in energy units (Yu.Kharlov)
+ *
+ * Revision 1.90 2006/04/11 15:22:59 hristov
+ * run number in query set to -1: forces AliCDBManager to use its run number (A.Colla)
+ *
+ * Revision 1.89 2006/03/13 14:05:42 kharlov
+ * Calibration objects for EMC and CPV
+ *
+ * Revision 1.88 2006/01/11 08:54:52 hristov
+ * Additional protection in case no calibration entry was found
+ *
+ * Revision 1.87 2005/11/22 08:46:43 kharlov
+ * Updated to new CDB (Boris Polichtchouk)
+ *
+ * Revision 1.86 2005/11/14 21:52:43 hristov
+ * Coding conventions
+ *
+ * Revision 1.85 2005/09/27 16:08:08 hristov
+ * New version of CDB storage framework (A.Colla)
+ *
+ * Revision 1.84 2005/09/21 10:02:47 kharlov
+ * Reading calibration from CDB (Boris Polichtchouk)
+ *
+ * Revision 1.82 2005/09/02 15:43:13 kharlov
+ * Add comments in GetCalibrationParameters and Calibrate
+ *
+ * Revision 1.81 2005/09/02 14:32:07 kharlov
+ * Calibration of raw data
+ *
+ * Revision 1.80 2005/08/24 15:31:36 kharlov
+ * Setting raw digits flag
+ *
+ * Revision 1.79 2005/07/25 15:53:53 kharlov
+ * Read raw data
+ *
+ * Revision 1.78 2005/05/28 14:19:04 schutz
+ * Compilation warnings fixed by T.P.
+ *
+ */
+
+//*-- Author: Yves Schutz (SUBATECH) & Dmitri Peressounko (SUBATECH & Kurchatov Institute)
//////////////////////////////////////////////////////////////////////////////
+// Clusterization class. Performs clusterization (collects neighbouring active cells) and
+// unfolds the clusters having several local maxima.
+// Results are stored in TreeR#, branches PHOSEmcRP (EMC recPoints),
+// PHOSCpvRP (CPV RecPoints) and AliPHOSClusterizer (Clusterizer with all
+// parameters including input digits branch title, thresholds etc.)
+// This TTask is normally called from Reconstructioner, but can as well be used in
+// standalone mode.
+// Use Case:
+// root [0] AliPHOSClusterizerv1 * cl = new AliPHOSClusterizerv1("galice.root", "recpointsname", "digitsname")
+// Warning in <TDatabasePDG::TDatabasePDG>: object already instantiated
+// // reads gAlice from header file "galice.root", uses digits stored in the branch names "digitsname" (default = "Default")
+// // and saves recpoints in branch named "recpointsname" (default = "digitsname")
+// root [1] cl->ExecuteTask()
+// //finds RecPoints in all events stored in galice.root
+// root [2] cl->SetDigitsBranch("digits2")
+// //sets another title for Digitis (input) branch
+// root [3] cl->SetRecPointsBranch("recp2")
+// //sets another title four output branches
+// root [4] cl->SetEmcLocalMaxCut(0.03)
+// //set clusterization parameters
+// root [5] cl->ExecuteTask("deb all time")
+// //once more finds RecPoints options are
+// // deb - print number of found rec points
+// // deb all - print number of found RecPoints and some their characteristics
+// // time - print benchmarking results
// --- ROOT system ---
#include "TMath.h"
+#include "TMinuit.h"
+#include "TTree.h"
+#include "TBenchmark.h"
// --- Standard library ---
-#include <iostream.h>
-
// --- AliRoot header files ---
-
+#include "AliLog.h"
+#include "AliRunLoader.h"
+#include "AliGenerator.h"
+#include "AliPHOSGetter.h"
+#include "AliPHOSGeometry.h"
#include "AliPHOSClusterizerv1.h"
-#include "AliPHOSDigit.h"
#include "AliPHOSEmcRecPoint.h"
-#include "AliPHOSPpsdRecPoint.h"
-#include "AliPHOSv0.h"
-#include "AliRun.h"
+#include "AliPHOSCpvRecPoint.h"
+#include "AliPHOSDigit.h"
+#include "AliPHOSDigitizer.h"
+#include "AliPHOSCalibrationDB.h"
+#include "AliCDBManager.h"
+#include "AliCDBStorage.h"
+#include "AliCDBEntry.h"
+#include "AliPHOSReconstructor.h"
+#include "AliPHOSRecoParam.h"
+#include "AliPHOSQualAssDataMaker.h"
ClassImp(AliPHOSClusterizerv1)
+
+//____________________________________________________________________________
+AliPHOSClusterizerv1::AliPHOSClusterizerv1() :
+ AliPHOSClusterizer(),
+ fDefaultInit(0), fEmcCrystals(0), fToUnfold(0),
+ fWrite(0), fNumberOfEmcClusters(0), fNumberOfCpvClusters(0),
+ fCalibData(0), fADCchanelEmc(0), fADCpedestalEmc(0),
+ fADCchanelCpv(0), fADCpedestalCpv(0), fEmcClusteringThreshold(0),
+ fCpvClusteringThreshold(0), fEmcMinE(0), fCpvMinE(0),
+ fEmcLocMaxCut(0), fW0(0), fCpvLocMaxCut(0),
+ fW0CPV(0), fRecPointsInRun(0), fEmcTimeGate(0),
+ fIsOldRCUFormat(0), fEventCounter(0)
+{
+ // default ctor (to be used mainly by Streamer)
+
+ InitParameters() ;
+ fDefaultInit = kTRUE ;
+}
+
+//____________________________________________________________________________
+AliPHOSClusterizerv1::AliPHOSClusterizerv1(const TString alirunFileName, const TString eventFolderName) :
+ AliPHOSClusterizer(alirunFileName, eventFolderName),
+ fDefaultInit(0), fEmcCrystals(0), fToUnfold(0),
+ fWrite(0), fNumberOfEmcClusters(0), fNumberOfCpvClusters(0),
+ fCalibData(0), fADCchanelEmc(0), fADCpedestalEmc(0),
+ fADCchanelCpv(0), fADCpedestalCpv(0), fEmcClusteringThreshold(0),
+ fCpvClusteringThreshold(0), fEmcMinE(0), fCpvMinE(0),
+ fEmcLocMaxCut(0), fW0(0), fCpvLocMaxCut(0),
+ fW0CPV(0), fRecPointsInRun(0), fEmcTimeGate(0),
+ fIsOldRCUFormat(0), fEventCounter(0)
+{
+ // ctor with the indication of the file where header Tree and digits Tree are stored
+
+ InitParameters() ;
+ Init() ;
+ fDefaultInit = kFALSE ;
+}
+
+//____________________________________________________________________________
+AliPHOSClusterizerv1::AliPHOSClusterizerv1(const AliPHOSClusterizerv1 & obj) :
+ AliPHOSClusterizer(obj),
+ fDefaultInit(0), fEmcCrystals(0), fToUnfold(0),
+ fWrite(0), fNumberOfEmcClusters(0), fNumberOfCpvClusters(0),
+ fCalibData(0), fADCchanelEmc(0), fADCpedestalEmc(0),
+ fADCchanelCpv(0), fADCpedestalCpv(0), fEmcClusteringThreshold(0),
+ fCpvClusteringThreshold(0), fEmcMinE(0), fCpvMinE(0),
+ fEmcLocMaxCut(0), fW0(0), fCpvLocMaxCut(0),
+ fW0CPV(0), fRecPointsInRun(0), fEmcTimeGate(0),
+ fIsOldRCUFormat(0), fEventCounter(0)
+{
+ // Copy constructor
+}
+//____________________________________________________________________________
+ AliPHOSClusterizerv1::~AliPHOSClusterizerv1()
+{
+ // dtor
+
+}
+//____________________________________________________________________________
+const TString AliPHOSClusterizerv1::BranchName() const
+{
+ return GetName();
+}
+
+//____________________________________________________________________________
+Float_t AliPHOSClusterizerv1::CalibrateEMC(Float_t amp, Int_t absId)
+{
+ // Convert EMC measured amplitude into real energy.
+ // Calibration parameters are taken from calibration data base for raw data,
+ // or from digitizer parameters for simulated data.
+
+ if(fCalibData){
+ Int_t relId[4];
+ AliPHOSGetter *gime = AliPHOSGetter::Instance();
+ gime->PHOSGeometry()->AbsToRelNumbering(absId,relId) ;
+ Int_t module = relId[0];
+ Int_t column = relId[3];
+ Int_t row = relId[2];
+ if(absId <= fEmcCrystals) { // this is EMC
+ fADCchanelEmc = fCalibData->GetADCchannelEmc (module,column,row);
+ return amp*fADCchanelEmc ;
+ }
+ }
+ else{ //simulation
+ if(absId <= fEmcCrystals) // this is EMC
+ return fADCpedestalEmc + amp*fADCchanelEmc ;
+ }
+ return 0;
+}
+
+//____________________________________________________________________________
+Float_t AliPHOSClusterizerv1::CalibrateCPV(Int_t amp, Int_t absId)
+{
+ // Convert digitized CPV amplitude into charge.
+ // Calibration parameters are taken from calibration data base for raw data,
+ // or from digitizer parameters for simulated data.
+
+ if(fCalibData){
+ Int_t relId[4];
+ AliPHOSGetter *gime = AliPHOSGetter::Instance();
+ gime->PHOSGeometry()->AbsToRelNumbering(absId,relId) ;
+ Int_t module = relId[0];
+ Int_t column = relId[3];
+ Int_t row = relId[2];
+ if(absId > fEmcCrystals) { // this is CPV
+ fADCchanelCpv = fCalibData->GetADCchannelCpv (module,column,row);
+ fADCpedestalCpv = fCalibData->GetADCpedestalCpv(module,column,row);
+ return fADCpedestalCpv + amp*fADCchanelCpv ;
+ }
+ }
+ else{ //simulation
+ if(absId > fEmcCrystals) // this is CPV
+ return fADCpedestalCpv+ amp*fADCchanelCpv ;
+ }
+ return 0;
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::Exec(Option_t *option)
+{
+ // Steering method to perform clusterization for events
+ // in the range from fFirstEvent to fLastEvent.
+ // This range is optionally set by SetEventRange().
+ // if fLastEvent=-1 (by default), then process events until the end.
+
+ if(strstr(option,"tim"))
+ gBenchmark->Start("PHOSClusterizer");
+
+ if(strstr(option,"print")) {
+ Print() ;
+ return ;
+ }
+
+ GetCalibrationParameters() ;
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance() ;
+ if (fRawReader == 0)
+ gime->SetRawDigits(kFALSE);
+ else
+ gime->SetRawDigits(kTRUE);
+
+ if (fLastEvent == -1)
+ fLastEvent = gime->MaxEvent() - 1 ;
+ else
+ fLastEvent = TMath::Min(fFirstEvent, gime->MaxEvent()); // one event at the time
+ Int_t nEvents = fLastEvent - fFirstEvent + 1;
+
+ Int_t ievent ;
+ for (ievent = fFirstEvent; ievent <= fLastEvent; ievent++) {
+ fEventCounter++ ;
+ if (fRawReader == 0)
+ gime->Event(ievent ,"D"); // Read digits from simulated data
+ else {
+ AliRunLoader * rl = AliRunLoader::GetRunLoader(gime->PhosLoader()->GetTitle());
+ rl->GetEvent(ievent);
+ gime->Event(fRawReader,"W",fIsOldRCUFormat); // Read digits from raw data
+ }
+ fNumberOfEmcClusters = fNumberOfCpvClusters = 0 ;
+
+ MakeClusters() ;
+
+ AliDebug(2,Form(" ---- Printing clusters (%d) of event %d.\n",
+ gime->EmcRecPoints()->GetEntries(),ievent));
+ if(AliLog::GetGlobalDebugLevel()>1)
+ gime->EmcRecPoints()->Print();
+
+ if(fToUnfold)
+ MakeUnfolding() ;
+
+ //makes the quality assurance data
+ if (GetQualAssDataMaker()) {
+ GetQualAssDataMaker()->SetData(gime->EmcRecPoints()) ;
+ GetQualAssDataMaker()->Exec(AliQualAss::kRECPOINTS) ;
+ GetQualAssDataMaker()->SetData(gime->CpvRecPoints()) ;
+ GetQualAssDataMaker()->Exec(AliQualAss::kRECPOINTS) ;
+ }
+
+ WriteRecPoints();
+
+ if(strstr(option,"deb"))
+ PrintRecPoints(option) ;
+
+ //increment the total number of recpoints per run
+ fRecPointsInRun += gime->EmcRecPoints()->GetEntriesFast() ;
+ fRecPointsInRun += gime->CpvRecPoints()->GetEntriesFast() ;
+ }
+
+ //Write the quality assurance data only after the last event
+ if (GetQualAssDataMaker() && fEventCounter == gime->MaxEvent())
+ GetQualAssDataMaker()->Finish(AliQualAss::kRECPOINTS) ;
+
+ if(fWrite) //do not unload in "on flight" mode
+ Unload();
+
+ if(strstr(option,"tim")){
+ gBenchmark->Stop("PHOSClusterizer");
+ AliInfo(Form("took %f seconds for Clusterizing %f seconds per event \n",
+ gBenchmark->GetCpuTime("PHOSClusterizer"),
+ gBenchmark->GetCpuTime("PHOSClusterizer")/nEvents )) ;
+ }
+}
+
+//____________________________________________________________________________
+Bool_t AliPHOSClusterizerv1::FindFit(AliPHOSEmcRecPoint * emcRP, AliPHOSDigit ** maxAt, Float_t * maxAtEnergy,
+ Int_t nPar, Float_t * fitparameters) const
+{
+ // Calls TMinuit to fit the energy distribution of a cluster with several maxima
+ // The initial values for fitting procedure are set equal to the positions of local maxima.
+ // Cluster will be fitted as a superposition of nPar/3 electromagnetic showers
+
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
+ TClonesArray * digits = gime->Digits();
+
+ gMinuit->mncler(); // Reset Minuit's list of paramters
+ gMinuit->SetPrintLevel(-1) ; // No Printout
+ gMinuit->SetFCN(AliPHOSClusterizerv1::UnfoldingChiSquare) ;
+ // To set the address of the minimization function
+
+ TList * toMinuit = new TList();
+ toMinuit->AddAt(emcRP,0) ;
+ toMinuit->AddAt(digits,1) ;
+
+ gMinuit->SetObjectFit(toMinuit) ; // To tranfer pointer to UnfoldingChiSquare
+
+ // filling initial values for fit parameters
+ AliPHOSDigit * digit ;
+
+ Int_t ierflg = 0;
+ Int_t index = 0 ;
+ Int_t nDigits = (Int_t) nPar / 3 ;
+
+ Int_t iDigit ;
+
+ const AliPHOSGeometry * geom = gime->PHOSGeometry() ;
+
+ for(iDigit = 0; iDigit < nDigits; iDigit++){
+ digit = maxAt[iDigit];
+
+ Int_t relid[4] ;
+ Float_t x = 0.;
+ Float_t z = 0.;
+ geom->AbsToRelNumbering(digit->GetId(), relid) ;
+ geom->RelPosInModule(relid, x, z) ;
+
+ Float_t energy = maxAtEnergy[iDigit] ;
+
+ gMinuit->mnparm(index, "x", x, 0.1, 0, 0, ierflg) ;
+ index++ ;
+ if(ierflg != 0){
+ Warning("FindFit", "PHOS Unfolding unable to set initial value for fit procedure : x = %f\n", x ) ;
+ return kFALSE;
+ }
+ gMinuit->mnparm(index, "z", z, 0.1, 0, 0, ierflg) ;
+ index++ ;
+ if(ierflg != 0){
+ Warning("FindFit", "PHOS Unfolding unable to set initial value for fit procedure : z =%f\n", z ) ;
+ return kFALSE;
+ }
+ gMinuit->mnparm(index, "Energy", energy , 0.05*energy, 0., 4.*energy, ierflg) ;
+ index++ ;
+ if(ierflg != 0){
+ Warning("FindFit", "PHOS Unfolding unable to set initial value for fit procedure : energy = %f\n", energy ) ;
+ return kFALSE;
+ }
+ }
+
+ Double_t p0 = 0.1 ; // "Tolerance" Evaluation stops when EDM = 0.0001*p0 ; The number of function call slightly
+ // depends on it.
+ Double_t p1 = 1.0 ;
+ Double_t p2 = 0.0 ;
+
+ gMinuit->mnexcm("SET STR", &p2, 0, ierflg) ; // force TMinuit to reduce function calls
+ gMinuit->mnexcm("SET GRA", &p1, 1, ierflg) ; // force TMinuit to use my gradient
+ gMinuit->SetMaxIterations(5);
+ gMinuit->mnexcm("SET NOW", &p2 , 0, ierflg) ; // No Warnings
+
+ gMinuit->mnexcm("MIGRAD", &p0, 0, ierflg) ; // minimize
+
+ if(ierflg == 4){ // Minimum not found
+ Warning("FindFit", "PHOS Unfolding fit not converged, cluster abandoned\n" );
+ return kFALSE ;
+ }
+ for(index = 0; index < nPar; index++){
+ Double_t err ;
+ Double_t val ;
+ gMinuit->GetParameter(index, val, err) ; // Returns value and error of parameter index
+ fitparameters[index] = val ;
+ }
+
+ delete toMinuit ;
+ return kTRUE;
+
+}
//____________________________________________________________________________
-AliPHOSClusterizerv1::AliPHOSClusterizerv1()
+void AliPHOSClusterizerv1::GetCalibrationParameters()
{
- // default ctor (to be used)
+ // Set calibration parameters:
+ // if calibration database exists, they are read from database,
+ // otherwise, reconstruction stops in the constructor of AliPHOSCalibData
+ //
+ // It is a user responsilibity to open CDB before reconstruction, for example:
+ // AliCDBStorage* storage = AliCDBManager::Instance()->GetStorage("local://CalibDB");
- fA = 0.;
- fB = 0.01 ;
- fGeom = AliPHOSGeometry::GetInstance();
+ fCalibData = new AliPHOSCalibData(-1); //use AliCDBManager's run number
+ if (fCalibData->GetCalibDataEmc() == 0)
+ AliFatal("Calibration parameters for PHOS EMC not found. Stop reconstruction.\n");
+ if (fCalibData->GetCalibDataCpv() == 0)
+ AliFatal("Calibration parameters for PHOS CPV not found. Stop reconstruction.\n");
+
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::Init()
+{
+ // Make all memory allocations which can not be done in default constructor.
+ // Attach the Clusterizer task to the list of PHOS tasks
+
+ AliPHOSGetter* gime = AliPHOSGetter::Instance() ;
+ if(!gime)
+ gime = AliPHOSGetter::Instance(GetTitle(), fEventFolderName.Data());
+
+ AliPHOSGeometry * geom = gime->PHOSGeometry();
+
+ fEmcCrystals = geom->GetNModules() * geom->GetNCristalsInModule() ;
+
+ if(!gMinuit)
+ gMinuit = new TMinuit(100);
+
+ if ( !gime->Clusterizer() ) {
+ gime->PostClusterizer(this);
+ }
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::InitParameters()
+{
+
+ fNumberOfCpvClusters = 0 ;
fNumberOfEmcClusters = 0 ;
- fNumberOfPpsdClusters = 0 ;
- fEmcClusteringThreshold = 0.1;
- fEmcEnergyThreshold = 0.01;
- fPpsdClusteringThreshold = 0.00000015;
- fPpsdEnergyThreshold = 0.0000001;
- fW0 = 4.5 ;
- fLocMaxCut = 0.06 ;
+
+ const AliPHOSRecoParam* parEmc = AliPHOSReconstructor::GetRecoParamEmc();
+ if(!parEmc) AliFatal("Reconstruction parameters for EMC not set!");
+
+ const AliPHOSRecoParam* parCpv = AliPHOSReconstructor::GetRecoParamCpv();
+ if(!parCpv) AliFatal("Reconstruction parameters for CPV not set!");
+
+ fCpvClusteringThreshold = parCpv->GetClusteringThreshold();
+ fEmcClusteringThreshold = parEmc->GetClusteringThreshold();
+
+ fEmcLocMaxCut = parEmc->GetLocalMaxCut();
+ fCpvLocMaxCut = parCpv->GetLocalMaxCut();
+
+ fEmcMinE = parEmc->GetMinE();
+ fCpvMinE = parCpv->GetMinE();
+
+ fW0 = parEmc->GetLogWeight();
+ fW0CPV = parCpv->GetLogWeight();
+
+ fEmcTimeGate = 1.e-8 ;
+
+ fToUnfold = kTRUE ;
+
+ fRecPointsInRun = 0 ;
+
+ fWrite = kTRUE ;
+
+ fCalibData = 0 ;
+
+ SetEventRange(0,-1) ;
+
+ fIsOldRCUFormat = kFALSE;
}
//____________________________________________________________________________
-Int_t AliPHOSClusterizerv1::AreNeighbours(AliPHOSDigit * d1, AliPHOSDigit * d2)
+Int_t AliPHOSClusterizerv1::AreNeighbours(AliPHOSDigit * d1, AliPHOSDigit * d2)const
{
// Gives the neighbourness of two digits = 0 are not neighbour but continue searching
// = 1 are neighbour
// = 2 are not neighbour but do not continue searching
- // neighbours are defined as digits having at least common vertex
+ // neighbours are defined as digits having at least a common vertex
// The order of d1 and d2 is important: first (d1) should be a digit already in a cluster
// which is compared to a digit (d2) not yet in a cluster
+ AliPHOSGeometry * geom = AliPHOSGetter::Instance()->PHOSGeometry() ;
+
Int_t rv = 0 ;
Int_t relid1[4] ;
- fGeom->AbsToRelNumbering(d1->GetId(), relid1) ;
+ geom->AbsToRelNumbering(d1->GetId(), relid1) ;
Int_t relid2[4] ;
- fGeom->AbsToRelNumbering(d2->GetId(), relid2) ;
+ geom->AbsToRelNumbering(d2->GetId(), relid2) ;
- if ( (relid1[0] == relid2[0]) && (relid1[1]==relid2[1]) ) { // inside the same PHOS module and the same PPSD Module
+ if ( (relid1[0] == relid2[0]) && (relid1[1]==relid2[1]) ) { // inside the same PHOS module
Int_t rowdiff = TMath::Abs( relid1[2] - relid2[2] ) ;
Int_t coldiff = TMath::Abs( relid1[3] - relid2[3] ) ;
if (( coldiff <= 1 ) && ( rowdiff <= 1 )){
+ if((relid1[1] != 0) || (TMath::Abs(d1->GetTime() - d2->GetTime() ) < fEmcTimeGate))
rv = 1 ;
}
else {
if((relid2[2] > relid1[2]) && (relid2[3] > relid1[3]+1))
- rv = 2; // Difference in row numbers is too large to look further
+ rv = 2; // Difference in row numbers is too large to look further
}
}
else {
- if( (relid1[0] < relid2[0]) || (relid1[1] < relid2[1]) )
+ if( (relid1[0] < relid2[0]) || (relid1[1] != relid2[1]) )
rv=2 ;
}
-
+
return rv ;
}
-
//____________________________________________________________________________
-void AliPHOSClusterizerv1::FillandSort(const DigitsList * dl, TObjArray * tl)
+void AliPHOSClusterizerv1::CleanDigits(TClonesArray * digits)
{
- // Copies the digits with energy above thershold and sorts the list
- // according to increasing Id number
+ // Remove digits with amplitudes below threshold
- Int_t relid[4] ;
-
- TIter next(dl) ;
- AliPHOSDigit * digit ;
-
-
+ for(Int_t i=0; i<digits->GetEntriesFast(); i++){
+ AliPHOSDigit * digit = static_cast<AliPHOSDigit*>(digits->At(i)) ;
+ if ( (IsInEmc(digit) && CalibrateEMC(digit->GetEnergy(),digit->GetId()) < fEmcMinE) ||
+ (IsInCpv(digit) && CalibrateCPV(digit->GetAmp() ,digit->GetId()) < fCpvMinE) )
+ digits->RemoveAt(i) ;
+ }
+ digits->Compress() ;
+ for (Int_t i = 0 ; i < digits->GetEntriesFast() ; i++) {
+ AliPHOSDigit *digit = static_cast<AliPHOSDigit*>( digits->At(i) ) ;
+ digit->SetIndexInList(i) ;
+ }
+
+ //Overwrite digits tree
+ AliPHOSGetter* gime = AliPHOSGetter::Instance();
+ TTree * treeD = gime->TreeD();
+ treeD->Branch("PHOS", &digits);
+ treeD->Fill() ;
+ gime->WriteDigits("OVERWRITE");
+ gime->PhosLoader()->UnloadDigits() ;
+}
+//____________________________________________________________________________
+Bool_t AliPHOSClusterizerv1::IsInEmc(AliPHOSDigit * digit) const
+{
+ // Tells if (true) or not (false) the digit is in a PHOS-EMC module
+ Bool_t rv = kFALSE ;
+ AliPHOSGeometry * geom = AliPHOSGetter::Instance()->PHOSGeometry() ;
- while ( (digit = (AliPHOSDigit *)next()) ) {
+ Int_t nEMC = geom->GetNModules()*geom->GetNPhi()*geom->GetNZ();
-// cout << " clusterizerv1 " << endl ;
-// int nprim = digit->GetNprimary() ;
-// int * aprim = digit->GetPrimary() ;
-// for ( int ii = 0 ; ii < nprim ; ii++)
-// cout << ii << " prim = " << aprim[ii] << endl ;
+ if(digit->GetId() <= nEMC ) rv = kTRUE;
- Int_t id = digit->GetId() ;
- Float_t ene = Calibrate(digit->GetAmp()) ;
- fGeom->AbsToRelNumbering(id, relid) ;
- if(relid[1]==0){ // EMC
- if ( ene > fEmcEnergyThreshold )
- tl->Add(digit) ;
- }
+ return rv ;
+}
- else { //Ppsd
- if ( ene > fPpsdEnergyThreshold )
- tl->Add(digit) ;
- }
+//____________________________________________________________________________
+Bool_t AliPHOSClusterizerv1::IsInCpv(AliPHOSDigit * digit) const
+{
+ // Tells if (true) or not (false) the digit is in a PHOS-CPV module
+
+ Bool_t rv = kFALSE ;
+
+ AliPHOSGeometry * geom = AliPHOSGetter::Instance()->PHOSGeometry() ;
- }
- tl->Sort() ;
+ Int_t nEMC = geom->GetNModules()*geom->GetNPhi()*geom->GetNZ();
+
+ if(digit->GetId() > nEMC ) rv = kTRUE;
+
+ return rv ;
}
//____________________________________________________________________________
-void AliPHOSClusterizerv1:: GetNumberOfClustersFound(Int_t * numb)
+void AliPHOSClusterizerv1::Unload()
{
- // Fills numb with the number of EMC (numb[0]) clusters found
- // PPSD (numb[1]) clusters found
-
- numb[0] = fNumberOfEmcClusters ;
- numb[1] = fNumberOfPpsdClusters ;
+ AliPHOSGetter * gime = AliPHOSGetter::Instance() ;
+ gime->PhosLoader()->UnloadDigits() ;
+ gime->PhosLoader()->UnloadRecPoints() ;
}
//____________________________________________________________________________
-Bool_t AliPHOSClusterizerv1::IsInEmc(AliPHOSDigit * digit)
+void AliPHOSClusterizerv1::WriteRecPoints()
{
- // Tells if (true) or not (false) the digit is in a PHOS-EMC module
-
- Bool_t rv = kFALSE ;
- Int_t relid[4] ;
- fGeom->AbsToRelNumbering(digit->GetId(), relid) ;
+ // Creates new branches with given title
+ // fills and writes into TreeR.
- if ( relid[1] == 0 )
- rv = kTRUE;
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
- return rv ;
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+ TObjArray * cpvRecPoints = gime->CpvRecPoints() ;
+ TClonesArray * digits = gime->Digits() ;
+
+ Int_t index ;
+ //Evaluate position, dispersion and other RecPoint properties..
+ Int_t nEmc = emcRecPoints->GetEntriesFast();
+ for(index = 0; index < nEmc; index++){
+ AliPHOSEmcRecPoint * rp =
+ dynamic_cast<AliPHOSEmcRecPoint *>( emcRecPoints->At(index) );
+ rp->Purify(fEmcMinE) ;
+ if(rp->GetMultiplicity()==0){
+ emcRecPoints->RemoveAt(index) ;
+ delete rp ;
+ continue;
+ }
+
+ // No vertex is available now, calculate corrections in PID
+ rp->EvalAll(fW0,digits) ;
+ TVector3 fakeVtx(0.,0.,0.) ;
+ rp->EvalAll(fW0,fakeVtx,digits) ;
+ rp->EvalLocal2TrackingCSTransform();
+ }
+ emcRecPoints->Compress() ;
+// emcRecPoints->Sort() ; //Can not sort until position is calculated!
+ // emcRecPoints->Expand(emcRecPoints->GetEntriesFast()) ;
+ for(index = 0; index < emcRecPoints->GetEntries(); index++){
+ dynamic_cast<AliPHOSEmcRecPoint *>( emcRecPoints->At(index) )->SetIndexInList(index) ;
+ }
+
+ //For each rec.point set the distance to the nearest bad crystal (BVP)
+ SetDistancesToBadChannels();
+
+ //Now the same for CPV
+ for(index = 0; index < cpvRecPoints->GetEntries(); index++){
+ AliPHOSCpvRecPoint * rp = dynamic_cast<AliPHOSCpvRecPoint *>( cpvRecPoints->At(index) );
+ rp->EvalAll(fW0CPV,digits) ;
+ rp->EvalLocal2TrackingCSTransform();
+ }
+// cpvRecPoints->Sort() ;
+
+ for(index = 0; index < cpvRecPoints->GetEntries(); index++)
+ dynamic_cast<AliPHOSCpvRecPoint *>( cpvRecPoints->At(index) )->SetIndexInList(index) ;
+
+ cpvRecPoints->Expand(cpvRecPoints->GetEntriesFast()) ;
+
+ if(fWrite){ //We write TreeR
+ TTree * treeR = gime->TreeR();
+
+ Int_t bufferSize = 32000 ;
+ Int_t splitlevel = 0 ;
+
+ //First EMC
+ TBranch * emcBranch = treeR->Branch("PHOSEmcRP","TObjArray",&emcRecPoints,bufferSize,splitlevel);
+ emcBranch->SetTitle(BranchName());
+
+ //Now CPV branch
+ TBranch * cpvBranch = treeR->Branch("PHOSCpvRP","TObjArray",&cpvRecPoints,bufferSize,splitlevel);
+ cpvBranch->SetTitle(BranchName());
+
+ emcBranch ->Fill() ;
+ cpvBranch ->Fill() ;
+
+ gime->WriteRecPoints("OVERWRITE");
+ gime->WriteClusterizer("OVERWRITE");
+ }
}
//____________________________________________________________________________
-void AliPHOSClusterizerv1::MakeClusters(const DigitsList * dl,
- AliPHOSRecPoint::RecPointsList * emcl,
- AliPHOSRecPoint::RecPointsList * ppsdl)
+void AliPHOSClusterizerv1::MakeClusters()
{
// Steering method to construct the clusters stored in a list of Reconstructed Points
// A cluster is defined as a list of neighbour digits
+
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
+
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+ TObjArray * cpvRecPoints = gime->CpvRecPoints() ;
+
+ emcRecPoints->Delete() ;
+ cpvRecPoints->Delete() ;
- // Fill and sort the working digits list
- TObjArray tempodigitslist( dl->GetEntries() ) ;
- FillandSort(dl, &tempodigitslist) ;
+ TClonesArray * digits = gime->Digits() ;
+ //Remove digits below threshold
+ CleanDigits(digits) ;
+
+ TClonesArray * digitsC = static_cast<TClonesArray*>( digits->Clone() ) ;
+
// Clusterization starts
- TIter nextdigit(&tempodigitslist) ;
+
+ TIter nextdigit(digitsC) ;
AliPHOSDigit * digit ;
Bool_t notremoved = kTRUE ;
- while ( (digit = (AliPHOSDigit *)nextdigit()) ) { // scan over the list of digits
- AliPHOSRecPoint * clu ;
-
- AliPHOSDigit ** clusterdigitslist = new AliPHOSDigit*[dl->GetEntries()] ;
+ while ( (digit = dynamic_cast<AliPHOSDigit *>( nextdigit()) ) ) { // scan over the list of digitsC
+
+
+ AliPHOSRecPoint * clu = 0 ;
+
+ TArrayI clusterdigitslist(1500) ;
Int_t index ;
- if (( ( IsInEmc(digit) ) && ( Calibrate(digit->GetAmp() ) > fEmcClusteringThreshold ) ) ||
- ( ( !IsInEmc(digit) ) && ( Calibrate(digit->GetAmp() ) > fPpsdClusteringThreshold ) ) ) {
-
- Int_t iDigitInCluster = 0 ;
+ if (( IsInEmc (digit) &&
+ CalibrateEMC(digit->GetEnergy(),digit->GetId()) > fEmcClusteringThreshold ) ||
+ ( IsInCpv (digit) &&
+ CalibrateCPV(digit->GetAmp() ,digit->GetId()) > fCpvClusteringThreshold ) ) {
+ Int_t iDigitInCluster = 0 ;
+
if ( IsInEmc(digit) ) {
- // start a new EMC RecPoint
- // new ((*emcl)[fNumberOfEmcClusters]) AliPHOSEmcRecPoint(fW0, fLocMaxCut) ; if TClonesArray
- fNumberOfEmcClusters = emcl->GetEntries() ;
- (*emcl)[fNumberOfEmcClusters] = new AliPHOSEmcRecPoint(fW0, fLocMaxCut) ;
- clu = (AliPHOSEmcRecPoint *) emcl->At(fNumberOfEmcClusters) ;
+ // start a new EMC RecPoint
+ if(fNumberOfEmcClusters >= emcRecPoints->GetSize())
+ emcRecPoints->Expand(2*fNumberOfEmcClusters+1) ;
+
+ emcRecPoints->AddAt(new AliPHOSEmcRecPoint(""), fNumberOfEmcClusters) ;
+ clu = dynamic_cast<AliPHOSEmcRecPoint *>( emcRecPoints->At(fNumberOfEmcClusters) ) ;
fNumberOfEmcClusters++ ;
- clu->AddDigit(*digit, Calibrate(digit->GetAmp())) ;
- clusterdigitslist[iDigitInCluster] = digit ;
- iDigitInCluster++ ;
- tempodigitslist.Remove(digit) ;
+ clu->AddDigit(*digit, CalibrateEMC(digit->GetEnergy(),digit->GetId())) ;
+ clusterdigitslist[iDigitInCluster] = digit->GetIndexInList() ;
+ iDigitInCluster++ ;
+ digitsC->Remove(digit) ;
- }
+ } else {
+
+ // start a new CPV cluster
+ if(fNumberOfCpvClusters >= cpvRecPoints->GetSize())
+ cpvRecPoints->Expand(2*fNumberOfCpvClusters+1);
- else {
-
- // start a new PPSD cluster
- // new ((*ppsdl)[fNumberOfPpsdClusters]) AliPHOSPpsdRecPoint() ; if TClonesArray
- fNumberOfPpsdClusters = ppsdl->GetEntries() ;
- (*ppsdl)[fNumberOfPpsdClusters] = new AliPHOSPpsdRecPoint() ;
-
- clu = (AliPHOSPpsdRecPoint *) ppsdl->At(fNumberOfPpsdClusters) ;
- fNumberOfPpsdClusters++ ;
- clu->AddDigit(*digit, Calibrate(digit->GetAmp()) ) ;
- clusterdigitslist[iDigitInCluster] = digit ;
- iDigitInCluster++ ;
- tempodigitslist.Remove(digit) ;
- nextdigit.Reset() ;
-
- // Here we remove resting EMC digits, which cannot make cluster
+ cpvRecPoints->AddAt(new AliPHOSCpvRecPoint(""), fNumberOfCpvClusters) ;
+ clu = dynamic_cast<AliPHOSCpvRecPoint *>( cpvRecPoints->At(fNumberOfCpvClusters) ) ;
+ fNumberOfCpvClusters++ ;
+ clu->AddDigit(*digit, CalibrateCPV(digit->GetAmp(),digit->GetId()) ) ;
+ clusterdigitslist[iDigitInCluster] = digit->GetIndexInList() ;
+ iDigitInCluster++ ;
+ digitsC->Remove(digit) ;
+ nextdigit.Reset() ;
+
+ // Here we remove remaining EMC digits, which cannot make a cluster
+
if( notremoved ) {
-
- while( ( digit = (AliPHOSDigit *)nextdigit() ) ) {
-
+ while( ( digit = dynamic_cast<AliPHOSDigit *>( nextdigit() ) ) ) {
if( IsInEmc(digit) )
- tempodigitslist.Remove(digit) ;
+ digitsC->Remove(digit) ;
else
- break ;
-
- } // while digit
-
- } // if notremoved
-
+ break ;
+ }
+ notremoved = kFALSE ;
+ }
+
} // else
nextdigit.Reset() ;
-
+
AliPHOSDigit * digitN ;
index = 0 ;
while (index < iDigitInCluster){ // scan over digits already in cluster
- digit = clusterdigitslist[index] ;
- index++ ;
- while ( (digitN = (AliPHOSDigit *)nextdigit()) ) { // scan over the reduced list of digits
- Int_t ineb = AreNeighbours(digit, digitN); // call (digit,digitN) in THAT oder !!!!!
+ digit = dynamic_cast<AliPHOSDigit*>( digits->At(clusterdigitslist[index]) ) ;
+ index++ ;
+ while ( (digitN = dynamic_cast<AliPHOSDigit *>( nextdigit() ) ) ) { // scan over the reduced list of digits
+ Int_t ineb = AreNeighbours(digit, digitN); // call (digit,digitN) in THAT oder !!!!!
switch (ineb ) {
case 0 : // not a neighbour
- break ;
- case 1 : // are neighbours
- clu->AddDigit(*digitN, Calibrate( digitN->GetAmp() ) ) ;
- clusterdigitslist[iDigitInCluster] = digitN ;
- iDigitInCluster++ ;
- tempodigitslist.Remove(digitN) ;
- break ;
- case 2 : // too far from each other
- goto endofloop;
- } // switch
-
- } // while digitN
+ break ;
+ case 1 : // are neighbours
+ if (IsInEmc (digitN))
+ clu->AddDigit(*digitN, CalibrateEMC( digitN->GetEnergy(), digitN->GetId() ) );
+ else
+ clu->AddDigit(*digitN, CalibrateCPV( digitN->GetAmp() , digitN->GetId() ) );
+ clusterdigitslist[iDigitInCluster] = digitN->GetIndexInList() ;
+ iDigitInCluster++ ;
+ digitsC->Remove(digitN) ;
+ break ;
+ case 2 : // too far from each other
+ goto endofloop;
+ } // switch
+
+ } // while digitN
+
endofloop: ;
- nextdigit.Reset() ;
-
+ nextdigit.Reset() ;
+
} // loop over cluster
+
+ } // energy theshold
+
+
+ } // while digit
+
+ delete digitsC ;
+
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::MakeUnfolding()
+{
+ // Unfolds clusters using the shape of an ElectroMagnetic shower
+ // Performs unfolding of all EMC/CPV clusters
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
+
+ const AliPHOSGeometry * geom = gime->PHOSGeometry() ;
+
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+ TObjArray * cpvRecPoints = gime->CpvRecPoints() ;
+ TClonesArray * digits = gime->Digits() ;
+
+ // Unfold first EMC clusters
+ if(fNumberOfEmcClusters > 0){
+
+ Int_t nModulesToUnfold = geom->GetNModules() ;
+
+ Int_t numberofNotUnfolded = fNumberOfEmcClusters ;
+ Int_t index ;
+ for(index = 0 ; index < numberofNotUnfolded ; index++){
+
+ AliPHOSEmcRecPoint * emcRecPoint = dynamic_cast<AliPHOSEmcRecPoint *>( emcRecPoints->At(index) ) ;
+ if(emcRecPoint->GetPHOSMod()> nModulesToUnfold)
+ break ;
+
+ Int_t nMultipl = emcRecPoint->GetMultiplicity() ;
+ AliPHOSDigit ** maxAt = new AliPHOSDigit*[nMultipl] ;
+ Float_t * maxAtEnergy = new Float_t[nMultipl] ;
+ Int_t nMax = emcRecPoint->GetNumberOfLocalMax(maxAt, maxAtEnergy,fEmcLocMaxCut,digits) ;
+
+ if( nMax > 1 ) { // if cluster is very flat (no pronounced maximum) then nMax = 0
+ UnfoldCluster(emcRecPoint, nMax, maxAt, maxAtEnergy) ;
+ emcRecPoints->Remove(emcRecPoint);
+ emcRecPoints->Compress() ;
+ index-- ;
+ fNumberOfEmcClusters -- ;
+ numberofNotUnfolded-- ;
+ }
+ else{
+ emcRecPoint->SetNExMax(1) ; //Only one local maximum
+ }
+
+ delete[] maxAt ;
+ delete[] maxAtEnergy ;
+ }
+ }
+ // Unfolding of EMC clusters finished
+
+
+ // Unfold now CPV clusters
+ if(fNumberOfCpvClusters > 0){
+
+ Int_t nModulesToUnfold = geom->GetNModules() ;
+
+ Int_t numberofCpvNotUnfolded = fNumberOfCpvClusters ;
+ Int_t index ;
+ for(index = 0 ; index < numberofCpvNotUnfolded ; index++){
+
+ AliPHOSRecPoint * recPoint = dynamic_cast<AliPHOSRecPoint *>( cpvRecPoints->At(index) ) ;
+
+ if(recPoint->GetPHOSMod()> nModulesToUnfold)
+ break ;
+
+ AliPHOSEmcRecPoint * emcRecPoint = dynamic_cast<AliPHOSEmcRecPoint*>(recPoint) ;
+
+ Int_t nMultipl = emcRecPoint->GetMultiplicity() ;
+ AliPHOSDigit ** maxAt = new AliPHOSDigit*[nMultipl] ;
+ Float_t * maxAtEnergy = new Float_t[nMultipl] ;
+ Int_t nMax = emcRecPoint->GetNumberOfLocalMax(maxAt, maxAtEnergy,fCpvLocMaxCut,digits) ;
+
+ if( nMax > 1 ) { // if cluster is very flat (no pronounced maximum) then nMax = 0
+ UnfoldCluster(emcRecPoint, nMax, maxAt, maxAtEnergy) ;
+ cpvRecPoints->Remove(emcRecPoint);
+ cpvRecPoints->Compress() ;
+ index-- ;
+ numberofCpvNotUnfolded-- ;
+ fNumberOfCpvClusters-- ;
+ }
+
+ delete[] maxAt ;
+ delete[] maxAtEnergy ;
+ }
+ }
+ //Unfolding of Cpv clusters finished
+
+}
+
+//____________________________________________________________________________
+Double_t AliPHOSClusterizerv1::ShowerShape(Double_t x, Double_t z)
+{
+ // Shape of the shower (see PHOS TDR)
+ // If you change this function, change also the gradient evaluation in ChiSquare()
+
+ //for the moment we neglect dependence on the incident angle.
+
+ Double_t r2 = x*x + z*z ;
+ Double_t r4 = r2*r2 ;
+ Double_t r295 = TMath::Power(r2, 2.95/2.) ;
+ Double_t shape = TMath::Exp( -r4 * (1. / (2.32 + 0.26 * r4) + 0.0316 / (1 + 0.0652 * r295) ) ) ;
+ return shape ;
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::UnfoldCluster(AliPHOSEmcRecPoint * iniEmc,
+ Int_t nMax,
+ AliPHOSDigit ** maxAt,
+ Float_t * maxAtEnergy)
+{
+ // Performs the unfolding of a cluster with nMax overlapping showers
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
+
+ const AliPHOSGeometry * geom = gime->PHOSGeometry() ;
+
+ const TClonesArray * digits = gime->Digits() ;
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+ TObjArray * cpvRecPoints = gime->CpvRecPoints() ;
+
+ Int_t nPar = 3 * nMax ;
+ Float_t * fitparameters = new Float_t[nPar] ;
+
+ Bool_t rv = FindFit(iniEmc, maxAt, maxAtEnergy, nPar, fitparameters) ;
+ if( !rv ) {
+ // Fit failed, return and remove cluster
+ iniEmc->SetNExMax(-1) ;
+ delete[] fitparameters ;
+ return ;
+ }
+
+ // create ufolded rec points and fill them with new energy lists
+ // First calculate energy deposited in each sell in accordance with fit (without fluctuations): efit[]
+ // and later correct this number in acordance with actual energy deposition
+
+ Int_t nDigits = iniEmc->GetMultiplicity() ;
+ Float_t * efit = new Float_t[nDigits] ;
+ Float_t xDigit=0.,zDigit=0. ;
+ Float_t xpar=0.,zpar=0.,epar=0. ;
+ Int_t relid[4] ;
+ AliPHOSDigit * digit = 0 ;
+ Int_t * emcDigits = iniEmc->GetDigitsList() ;
+
+ TVector3 vIncid ;
+
+ Int_t iparam ;
+ Int_t iDigit ;
+ for(iDigit = 0 ; iDigit < nDigits ; iDigit ++){
+ digit = dynamic_cast<AliPHOSDigit*>( digits->At(emcDigits[iDigit] ) ) ;
+ geom->AbsToRelNumbering(digit->GetId(), relid) ;
+ geom->RelPosInModule(relid, xDigit, zDigit) ;
+ efit[iDigit] = 0;
+
+ iparam = 0 ;
+ while(iparam < nPar ){
+ xpar = fitparameters[iparam] ;
+ zpar = fitparameters[iparam+1] ;
+ epar = fitparameters[iparam+2] ;
+ iparam += 3 ;
+// geom->GetIncidentVector(fVtx,relid[0],xpar,zpar,vIncid) ;
+// efit[iDigit] += epar * ShowerShape(xDigit - xpar,zDigit - zpar,vIncid) ;
+ efit[iDigit] += epar * ShowerShape(xDigit - xpar,zDigit - zpar) ;
+ }
+ }
+
+
+ // Now create new RecPoints and fill energy lists with efit corrected to fluctuations
+ // so that energy deposited in each cell is distributed betwin new clusters proportionally
+ // to its contribution to efit
+
+ Float_t * emcEnergies = iniEmc->GetEnergiesList() ;
+ Float_t ratio ;
+
+ iparam = 0 ;
+ while(iparam < nPar ){
+ xpar = fitparameters[iparam] ;
+ zpar = fitparameters[iparam+1] ;
+ epar = fitparameters[iparam+2] ;
+ iparam += 3 ;
+// geom->GetIncidentVector(fVtx,iniEmc->GetPHOSMod(),xpar,zpar,vIncid) ;
+
+ AliPHOSEmcRecPoint * emcRP = 0 ;
+
+ if(iniEmc->IsEmc()){ //create new entries in fEmcRecPoints...
+
+ if(fNumberOfEmcClusters >= emcRecPoints->GetSize())
+ emcRecPoints->Expand(2*fNumberOfEmcClusters) ;
+
+ (*emcRecPoints)[fNumberOfEmcClusters] = new AliPHOSEmcRecPoint("") ;
+ emcRP = dynamic_cast<AliPHOSEmcRecPoint *>( emcRecPoints->At(fNumberOfEmcClusters) ) ;
+ fNumberOfEmcClusters++ ;
+ emcRP->SetNExMax((Int_t)nPar/3) ;
+ }
+ else{//create new entries in fCpvRecPoints
+ if(fNumberOfCpvClusters >= cpvRecPoints->GetSize())
+ cpvRecPoints->Expand(2*fNumberOfCpvClusters) ;
+
+ (*cpvRecPoints)[fNumberOfCpvClusters] = new AliPHOSCpvRecPoint("") ;
+ emcRP = dynamic_cast<AliPHOSEmcRecPoint *>( cpvRecPoints->At(fNumberOfCpvClusters) ) ;
+ fNumberOfCpvClusters++ ;
+ }
+
+ Float_t eDigit ;
+ for(iDigit = 0 ; iDigit < nDigits ; iDigit ++){
+ digit = dynamic_cast<AliPHOSDigit*>( digits->At( emcDigits[iDigit] ) ) ;
+ geom->AbsToRelNumbering(digit->GetId(), relid) ;
+ geom->RelPosInModule(relid, xDigit, zDigit) ;
+// ratio = epar * ShowerShape(xDigit - xpar,zDigit - zpar,vIncid) / efit[iDigit] ;
+ ratio = epar * ShowerShape(xDigit - xpar,zDigit - zpar) / efit[iDigit] ;
+ eDigit = emcEnergies[iDigit] * ratio ;
+ emcRP->AddDigit( *digit, eDigit ) ;
+ }
+ }
- } //below energy theshold
+ delete[] fitparameters ;
+ delete[] efit ;
- delete[] clusterdigitslist ;
+}
+
+//_____________________________________________________________________________
+void AliPHOSClusterizerv1::UnfoldingChiSquare(Int_t & nPar, Double_t * Grad, Double_t & fret, Double_t * x, Int_t iflag)
+{
+ // Calculates the Chi square for the cluster unfolding minimization
+ // Number of parameters, Gradient, Chi squared, parameters, what to do
+
+ TList * toMinuit = dynamic_cast<TList*>( gMinuit->GetObjectFit() ) ;
+
+ AliPHOSEmcRecPoint * emcRP = dynamic_cast<AliPHOSEmcRecPoint*>( toMinuit->At(0) ) ;
+ TClonesArray * digits = dynamic_cast<TClonesArray*>( toMinuit->At(1) ) ;
+// TVector3 * vtx = dynamic_cast<TVector3*>(toMinuit->At(2)) ; //Vertex position
+
+ // AliPHOSEmcRecPoint * emcRP = dynamic_cast<AliPHOSEmcRecPoint *>( gMinuit->GetObjectFit() ) ; // EmcRecPoint to fit
+
+ Int_t * emcDigits = emcRP->GetDigitsList() ;
+
+ Int_t nOdigits = emcRP->GetDigitsMultiplicity() ;
+
+ Float_t * emcEnergies = emcRP->GetEnergiesList() ;
+
+ const AliPHOSGeometry * geom = AliPHOSGetter::Instance()->PHOSGeometry() ;
+// TVector3 vInc ;
+ fret = 0. ;
+ Int_t iparam ;
+
+ if(iflag == 2)
+ for(iparam = 0 ; iparam < nPar ; iparam++)
+ Grad[iparam] = 0 ; // Will evaluate gradient
+
+ Double_t efit ;
+
+ AliPHOSDigit * digit ;
+ Int_t iDigit ;
+
+ for( iDigit = 0 ; iDigit < nOdigits ; iDigit++) {
+
+ digit = dynamic_cast<AliPHOSDigit*>( digits->At( emcDigits[iDigit] ) );
+
+ Int_t relid[4] ;
+ Float_t xDigit ;
+ Float_t zDigit ;
+
+ geom->AbsToRelNumbering(digit->GetId(), relid) ;
+
+ geom->RelPosInModule(relid, xDigit, zDigit) ;
+
+ if(iflag == 2){ // calculate gradient
+ Int_t iParam = 0 ;
+ efit = 0 ;
+ while(iParam < nPar ){
+ Double_t dx = (xDigit - x[iParam]) ;
+ iParam++ ;
+ Double_t dz = (zDigit - x[iParam]) ;
+ iParam++ ;
+// geom->GetIncidentVector(*vtx,emcRP->GetPHOSMod(),x[iParam-2],x[iParam-1],vInc) ;
+// efit += x[iParam] * ShowerShape(dx,dz,vInc) ;
+ efit += x[iParam] * ShowerShape(dx,dz) ;
+ iParam++ ;
+ }
+ Double_t sum = 2. * (efit - emcEnergies[iDigit]) / emcEnergies[iDigit] ; // Here we assume, that sigma = sqrt(E)
+ iParam = 0 ;
+ while(iParam < nPar ){
+ Double_t xpar = x[iParam] ;
+ Double_t zpar = x[iParam+1] ;
+ Double_t epar = x[iParam+2] ;
+// geom->GetIncidentVector(*vtx,emcRP->GetPHOSMod(),xpar,zpar,vInc) ;
+ Double_t dr = TMath::Sqrt( (xDigit - xpar) * (xDigit - xpar) + (zDigit - zpar) * (zDigit - zpar) );
+// Double_t shape = sum * ShowerShape(xDigit - xpar,zDigit - zpar,vInc) ;
+ Double_t shape = sum * ShowerShape(xDigit - xpar,zDigit - zpar) ;
+//DP: No incident angle dependence in gradient yet!!!!!!
+ Double_t r4 = dr*dr*dr*dr ;
+ Double_t r295 = TMath::Power(dr,2.95) ;
+ Double_t deriv =-4. * dr*dr * ( 2.32 / ( (2.32 + 0.26 * r4) * (2.32 + 0.26 * r4) ) +
+ 0.0316 * (1. + 0.0171 * r295) / ( ( 1. + 0.0652 * r295) * (1. + 0.0652 * r295) ) ) ;
+
+ Grad[iParam] += epar * shape * deriv * (xpar - xDigit) ; // Derivative over x
+ iParam++ ;
+ Grad[iParam] += epar * shape * deriv * (zpar - zDigit) ; // Derivative over z
+ iParam++ ;
+ Grad[iParam] += shape ; // Derivative over energy
+ iParam++ ;
+ }
+ }
+ efit = 0;
+ iparam = 0 ;
+
+ while(iparam < nPar ){
+ Double_t xpar = x[iparam] ;
+ Double_t zpar = x[iparam+1] ;
+ Double_t epar = x[iparam+2] ;
+ iparam += 3 ;
+// geom->GetIncidentVector(*vtx,emcRP->GetPHOSMod(),xpar,zpar,vInc) ;
+// efit += epar * ShowerShape(xDigit - xpar,zDigit - zpar,vInc) ;
+ efit += epar * ShowerShape(xDigit - xpar,zDigit - zpar) ;
+ }
+
+ fret += (efit-emcEnergies[iDigit])*(efit-emcEnergies[iDigit])/emcEnergies[iDigit] ;
+ // Here we assume, that sigma = sqrt(E)
+ }
+
+}
+
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::Print(const Option_t *)const
+{
+ // Print clusterizer parameters
+
+ TString message ;
+ TString taskName(GetName()) ;
+ taskName.ReplaceAll(Version(), "") ;
+
+ if( strcmp(GetName(), "") !=0 ) {
+ // Print parameters
+ message = "\n--------------- %s %s -----------\n" ;
+ message += "Clusterizing digits from the file: %s\n" ;
+ message += " Branch: %s\n" ;
+ message += " EMC Clustering threshold = %f\n" ;
+ message += " EMC Local Maximum cut = %f\n" ;
+ message += " EMC Logarothmic weight = %f\n" ;
+ message += " CPV Clustering threshold = %f\n" ;
+ message += " CPV Local Maximum cut = %f\n" ;
+ message += " CPV Logarothmic weight = %f\n" ;
+ if(fToUnfold)
+ message += " Unfolding on\n" ;
+ else
+ message += " Unfolding off\n" ;
- } // while digit
+ message += "------------------------------------------------------------------" ;
+ }
+ else
+ message = " AliPHOSClusterizerv1 not initialized " ;
+
+ AliInfo(Form("%s, %s %s %s %s %s %s %s %s %s %s", message.Data(),
+ taskName.Data(),
+ GetTitle(),
+ taskName.Data(),
+ GetName(),
+ fEmcClusteringThreshold,
+ fEmcLocMaxCut,
+ fW0,
+ fCpvClusteringThreshold,
+ fCpvLocMaxCut,
+ fW0CPV )) ;
+}
+//____________________________________________________________________________
+//void AliPHOSClusterizerv1::GetVertex(void)
+//{ //Extracts vertex posisition
+//
+ //ESD
+//DP - todo if(){
+//
+// }
+
+// //MC Generator
+// if(gAlice && gAlice->GetMCApp() && gAlice->Generator()){
+// Float_t x,y,z ;
+// gAlice->Generator()->GetOrigin(x,y,z) ;
+// fVtx.SetXYZ(x,y,z) ;
+// return ;
+// }
+//
+// //No any source
+// fVtx[0]=fVtx[1]=fVtx[2]=0. ;
+//
+//}
+//____________________________________________________________________________
+void AliPHOSClusterizerv1::PrintRecPoints(Option_t * option)
+{
+ // Prints list of RecPoints produced at the current pass of AliPHOSClusterizer
+
+ AliPHOSGetter * gime = AliPHOSGetter::Instance();
+
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+ TObjArray * cpvRecPoints = gime->CpvRecPoints() ;
- tempodigitslist.Clear() ;
+ AliInfo(Form("\nevent %d \n Found %d EMC RecPoints and %d CPV RecPoints",
+ gAlice->GetEvNumber(),
+ emcRecPoints->GetEntriesFast(),
+ cpvRecPoints->GetEntriesFast() )) ;
+
+ fRecPointsInRun += emcRecPoints->GetEntriesFast() ;
+ fRecPointsInRun += cpvRecPoints->GetEntriesFast() ;
+
+
+ if(strstr(option,"all")) {
+ printf("\n EMC clusters \n") ;
+ printf("Index Ene(MeV) Multi Module X Y Z Lambdas_1 Lambda_2 # of prim Primaries list\n") ;
+ Int_t index ;
+ for (index = 0 ; index < emcRecPoints->GetEntries() ; index++) {
+ AliPHOSEmcRecPoint * rp = (AliPHOSEmcRecPoint * )emcRecPoints->At(index) ;
+ TVector3 locpos;
+ rp->GetLocalPosition(locpos);
+ Float_t lambda[2];
+ rp->GetElipsAxis(lambda);
+ Int_t * primaries;
+ Int_t nprimaries;
+ primaries = rp->GetPrimaries(nprimaries);
+ printf("\n%6d %8.2f %3d %2d %4.1f %4.1f %4.1f %4f %4f %2d : ",
+ rp->GetIndexInList(), rp->GetEnergy(), rp->GetMultiplicity(), rp->GetPHOSMod(),
+ locpos.X(), locpos.Y(), locpos.Z(), lambda[0], lambda[1], nprimaries) ;
+
+ for (Int_t iprimary=0; iprimary<nprimaries; iprimary++) {
+ printf("%d ", primaries[iprimary] ) ;
+ }
+ printf("\n") ;
+ }
+ //Now plot CPV recPoints
+ printf("\n CPV clusters \n") ;
+ printf("Index Ene(MeV) Module X Y Z \n") ;
+ for (index = 0 ; index < cpvRecPoints->GetEntries() ; index++) {
+ AliPHOSCpvRecPoint * rp = (AliPHOSCpvRecPoint * )cpvRecPoints->At(index) ;
+
+ TVector3 locpos;
+ rp->GetLocalPosition(locpos);
+
+ printf("\n%6d %8.2f %2d %4.1f %4.1f %4.1f \n",
+ rp->GetIndexInList(), rp->GetEnergy(), rp->GetPHOSMod(),
+ locpos.X(), locpos.Y(), locpos.Z()) ;
+ }
+ }
}
+
//____________________________________________________________________________
-void AliPHOSClusterizerv1::PrintParameters()
+void AliPHOSClusterizerv1::SetDistancesToBadChannels()
{
- // Print the energy thresholds
+ //For each EMC rec. point set the distance to the nearest bad crystal.
+ //Author: Boris Polichtchouk
+
+ if(!fCalibData->GetNumOfEmcBadChannels()) return;
+ AliInfo(Form("%d bad channel(s) found.\n",fCalibData->GetNumOfEmcBadChannels()));
+
+ AliPHOSGetter* gime = AliPHOSGetter::Instance();
+ AliPHOSGeometry* geom = gime->PHOSGeometry();
+
+ TObjArray * emcRecPoints = gime->EmcRecPoints() ;
+
+ Int_t badIds[8000];
+ fCalibData->EmcBadChannelIds(badIds);
+
+ AliPHOSEmcRecPoint* rp;
+
+ TMatrixF gmat;
+ TVector3 gposRecPoint; // global (in ALICE frame) position of rec. point
+ TVector3 gposBadChannel; // global position of bad crystal
+ TVector3 dR;
+
+ Float_t dist,minDist;
+
+ for(Int_t iRP=0; iRP<emcRecPoints->GetEntries(); iRP++){
+ rp = (AliPHOSEmcRecPoint*)emcRecPoints->At(iRP);
+ minDist = 1.e+07;
+
+ for(Int_t iBad=0; iBad<fCalibData->GetNumOfEmcBadChannels(); iBad++) {
+ rp->GetGlobalPosition(gposRecPoint,gmat);
+ geom->RelPosInAlice(badIds[iBad],gposBadChannel);
+ AliDebug(2,Form("BC position:[%.3f,%.3f,%.3f], RP position:[%.3f,%.3f,%.3f]. E=%.3f\n",
+ gposBadChannel.X(),gposBadChannel.Y(),gposBadChannel.Z(),
+ gposRecPoint.X(),gposRecPoint.Y(),gposRecPoint.Z(),rp->GetEnergy()));
+ dR = gposBadChannel-gposRecPoint;
+ dist = dR.Mag();
+ if(dist<minDist) minDist = dist;
+ }
+
+ rp->SetDistanceToBadCrystal(minDist);
+ }
- cout << "PHOS Clusterizer version 1 :" << endl
- << " EMC Clustering threshold = " << fEmcClusteringThreshold << endl
- << " EMC Energy threshold = " << fEmcEnergyThreshold << endl
- << " PPSD Clustering threshold = " << fPpsdClusteringThreshold << endl
- << " PPSD Energy threshold = " << fPpsdEnergyThreshold << endl ;
}
git://git.uio.no / u / mrichter / AliRoot.git / blobdiff