]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - TOF/AliTOFtracker.cxx
Re-organization of vertex constraints in the primary vertex determination:
[u/mrichter/AliRoot.git] / TOF / AliTOFtracker.cxx
index c54deb1177744363703158617d2c1fd35e202e65..cf4023cb642b6270df07a3b82dc1e4a70424e5e7 100644 (file)
  * provided "as is" without express or implied warranty.                  *
  **************************************************************************/
 
-/* $Id$ */
+//--------------------------------------------------------------------//
+//                                                                    //
+// AliTOFtracker Class                                                //
+// Task: Perform association of the ESD tracks to TOF Clusters        //
+// and Update ESD track with associated TOF Cluster parameters        //
+//                                                                    //
+// -- Authors : S. Arcelli, C. Zampolli (Bologna University and INFN) //
+// -- Contacts: Annalisa.De.Caro@cern.ch                              //
+// --         : Chiara.Zampolli@bo.infn.it                            //
+// --         : Silvia.Arcelli@bo.infn.it                             //
+//                                                                    //
+//--------------------------------------------------------------------//
 
+#include <Rtypes.h>
+#include <TROOT.h>
+
+#include <TSeqCollection.h>
+#include <TClonesArray.h>
+#include <TGeoManager.h>
+#include <TTree.h>
+#include <TFile.h>
+#include <TH2F.h>
+
+#include "AliGeomManager.h"
+#include "AliESDtrack.h"
+#include "AliESDEvent.h"
+#include "AliLog.h"
+#include "AliTrackPointArray.h"
+#include "AliCDBManager.h"
+
+#include "AliTOFpidESD.h"
+#include "AliTOFRecoParam.h"
+#include "AliTOFReconstructor.h"
+#include "AliTOFcluster.h"
+#include "AliTOFGeometry.h"
 #include "AliTOFtracker.h"
+#include "AliTOFtrack.h"
 
+extern TGeoManager *gGeoManager;
+extern TROOT *gROOT;
 
 ClassImp(AliTOFtracker)
 
+//_____________________________________________________________________________
+AliTOFtracker::AliTOFtracker():
+  fRecoParam(0x0),
+  fGeom(0x0),
+  fPid(0x0),
+  fN(0),
+  fNseeds(0),
+  fNseedsTOF(0),
+  fngoodmatch(0),
+  fnbadmatch(0),
+  fnunmatch(0),
+  fnmatch(0),
+  fTracks(new TClonesArray("AliTOFtrack")),
+  fSeeds(new TClonesArray("AliESDtrack")),
+  fHDigClusMap(0x0),
+  fHDigNClus(0x0),
+  fHDigClusTime(0x0),
+  fHDigClusToT(0x0),
+  fHRecNClus(0x0),
+  fHRecDist(0x0),
+  fHRecSigYVsP(0x0),
+  fHRecSigZVsP(0x0),
+  fHRecSigYVsPWin(0x0),
+  fHRecSigZVsPWin(0x0),
+  fCalTree(0x0),
+  fIch(-1),
+  fToT(-1.),
+  fTime(-1.),
+  fExpTimePi(-1.),
+  fExpTimeKa(-1.),
+  fExpTimePr(-1.)
+ { 
+  //AliTOFtracker main Ctor
+   
+   // Gettimg the geometry 
+   fGeom= new AliTOFGeometry();
+
+   InitCheckHists();
+
+}
+//_____________________________________________________________________________
+AliTOFtracker::AliTOFtracker(const AliTOFtracker &t):
+  AliTracker(),
+  fRecoParam(0x0),
+  fGeom(0x0),
+  fPid(0x0),
+  fN(0),
+  fNseeds(0),
+  fNseedsTOF(0),
+  fngoodmatch(0),
+  fnbadmatch(0),
+  fnunmatch(0),
+  fnmatch(0),
+  fTracks(new TClonesArray("AliTOFtrack")),
+  fSeeds(new TClonesArray("AliESDtrack")),
+  fHDigClusMap(0x0),
+  fHDigNClus(0x0),
+  fHDigClusTime(0x0),
+  fHDigClusToT(0x0),
+  fHRecNClus(0x0),
+  fHRecDist(0x0),
+  fHRecSigYVsP(0x0),
+  fHRecSigZVsP(0x0),
+  fHRecSigYVsPWin(0x0),
+  fHRecSigZVsPWin(0x0),
+  fCalTree(0x0),
+  fIch(-1),
+  fToT(-1.),
+  fTime(-1.),
+  fExpTimePi(-1.),
+  fExpTimeKa(-1.),
+  fExpTimePr(-1.)
+ { 
+  //AliTOFtracker copy Ctor
+
+  fNseeds=t.fNseeds;
+  fNseeds=t.fNseeds;
+  fNseedsTOF=t.fNseedsTOF;
+  fngoodmatch=t.fngoodmatch;
+  fnbadmatch=t.fnbadmatch;
+  fnunmatch=t.fnunmatch;
+  fnmatch=t.fnmatch;
+  fRecoParam=t.fRecoParam;
+  fPid=t.fPid;
+  fSeeds=t.fSeeds;
+  fTracks=t.fTracks;
+  fN=t.fN;
+}
+
+//_____________________________________________________________________________
+AliTOFtracker& AliTOFtracker::operator=(const AliTOFtracker &t)
+{ 
+  //AliTOFtracker assignment operator
+
+  this->fNseeds=t.fNseeds;
+  this->fNseedsTOF=t.fNseedsTOF;
+  this->fngoodmatch=t.fngoodmatch;
+  this->fnbadmatch=t.fnbadmatch;
+  this->fnunmatch=t.fnunmatch;
+  this->fnmatch=t.fnmatch;
+  this->fRecoParam = t.fRecoParam;
+  this->fGeom=t.fGeom;
+  this->fPid = t.fPid;
+  this->fSeeds=t.fSeeds;
+  this->fTracks=t.fTracks;
+  this->fN=t.fN;
+  return *this;
+
+}
+//_____________________________________________________________________________
+AliTOFtracker::~AliTOFtracker() {
+  //
+  // Dtor
+  //
+
+  SaveCheckHists();
+
+  if(!(AliCDBManager::Instance()->GetCacheFlag())){
+    delete fRecoParam;
+  }
+  delete fGeom; 
+  delete fPid; 
+  delete fHDigClusMap;
+  delete fHDigNClus;
+  delete fHDigClusTime;
+  delete fHDigClusToT;
+  delete fHRecNClus;
+  delete fHRecDist;
+  delete fHRecSigYVsP;
+  delete fHRecSigZVsP;
+  delete fHRecSigYVsPWin;
+  delete fHRecSigZVsPWin;
+  delete fCalTree;
+  if (fTracks){
+    fTracks->Delete();
+    delete fTracks;
+    fTracks=0x0;
+  }
+  if (fSeeds){
+    fSeeds->Delete();
+    delete fSeeds;
+    fSeeds=0x0;
+  }
+
+}
+//_____________________________________________________________________________
+Int_t AliTOFtracker::PropagateBack(AliESDEvent* event) {
+  //
+  // Gets seeds from ESD event and Match with TOF Clusters
+  //
+
+  // initialize RecoParam for current event
+
+  AliInfo("Initializing params for TOF... ");
+
+  fRecoParam = AliTOFReconstructor::GetRecoParam();  // instantiate reco param from STEER...
+
+  if (fRecoParam == 0x0) { 
+    AliFatal("No Reco Param found for TOF!!!");
+  }
+  //fRecoParam->Dump();
+  if(fRecoParam->GetApplyPbPbCuts())fRecoParam=fRecoParam->GetPbPbparam();
+  //fRecoParam->PrintParameters();
+
+  Double_t parPID[2];   
+  parPID[0]=fRecoParam->GetTimeResolution();
+  parPID[1]=fRecoParam->GetTimeNSigma();
+  fPid=new AliTOFpidESD(parPID);
+
+  //Initialise some counters
+
+  fNseeds=0;
+  fNseedsTOF=0;
+  fngoodmatch=0;
+  fnbadmatch=0;
+  fnunmatch=0;
+  fnmatch=0;
+
+  Int_t ntrk=event->GetNumberOfTracks();
+  fNseeds = ntrk;
+  TClonesArray &aESDTrack = *fSeeds;
+
+
+  //Load ESD tracks into a local Array of ESD Seeds
+
+  for (Int_t i=0; i<fNseeds; i++) {
+    AliESDtrack *t=event->GetTrack(i);
+    new(aESDTrack[i]) AliESDtrack(*t);
+  }
+
+  //Prepare ESD tracks candidates for TOF Matching
+  CollectESD();
+
+  //First Step with Strict Matching Criterion
+  MatchTracks(kFALSE);
+
+  //Second Step with Looser Matching Criterion
+  MatchTracks(kTRUE);
+
+  AliInfo(Form("Number of matched tracks: %d",fnmatch));
+  AliInfo(Form("Number of good matched tracks: %d",fngoodmatch));
+  AliInfo(Form("Number of bad  matched tracks: %d",fnbadmatch));
+
+  //Update the matched ESD tracks
+
+  for (Int_t i=0; i<ntrk; i++) {
+    AliESDtrack *t=event->GetTrack(i);
+    AliESDtrack *seed =(AliESDtrack*)fSeeds->UncheckedAt(i);
+    if(seed->GetTOFsignal()>0){
+      t->SetTOFsignal(seed->GetTOFsignal());
+      t->SetTOFcluster(seed->GetTOFcluster());
+      t->SetTOFsignalToT(seed->GetTOFsignalToT());
+      t->SetTOFsignalRaw(seed->GetTOFsignalRaw());
+      t->SetTOFsignalDz(seed->GetTOFsignalDz());
+      t->SetTOFCalChannel(seed->GetTOFCalChannel());
+      Int_t tlab[3]; seed->GetTOFLabel(tlab);    
+      t->SetTOFLabel(tlab);
+      AliTOFtrack *track = new AliTOFtrack(*seed); 
+      t->UpdateTrackParams(track,AliESDtrack::kTOFout);   
+      delete track;
+    }
+  }
+
+  //Handle Time Zero information
+
+  Double_t timeZero=0.;
+  Double_t timeZeroMax=99999.;
+  Bool_t usetimeZero     = fRecoParam->UseTimeZero();
+  Bool_t timeZeroFromT0  = fRecoParam->GetTimeZerofromT0();
+  Bool_t timeZeroFromTOF = fRecoParam->GetTimeZerofromTOF();
+
+  AliDebug(1,Form("Use Time Zero?: %d",usetimeZero));
+  AliDebug(1,Form("Time Zero from T0? : %d",timeZeroFromT0));
+  AliDebug(1,Form("Time Zero From TOF? : %d",timeZeroFromTOF));
+
+  if(usetimeZero){
+    if(timeZeroFromT0){
+      timeZero=GetTimeZerofromT0(event); 
+    }
+    if(timeZeroFromTOF && (timeZero>timeZeroMax || !timeZeroFromT0)){
+      timeZero=GetTimeZerofromTOF(event); 
+    }
+  }
+  AliDebug(2,Form("time Zero used in PID: %f",timeZero));
+  //Make TOF PID
+  fPid->MakePID(event,timeZero);
+
+  fSeeds->Clear();
+  fTracks->Clear();
+  return 0;
+  
+}
+//_________________________________________________________________________
+void AliTOFtracker::CollectESD() {
+   //prepare the set of ESD tracks to be matched to clusters in TOF
+
+  Int_t seedsTOF1=0;
+  Int_t seedsTOF2=0;
+  TClonesArray &aTOFTrack = *fTracks;
+  for (Int_t i=0; i<fNseeds; i++) {
+
+    AliESDtrack *t =(AliESDtrack*)fSeeds->UncheckedAt(i);
+    if ((t->GetStatus()&AliESDtrack::kTPCout)==0)continue;
+
+    // TRD 'good' tracks, already propagated at 372 cm
+
+    AliTOFtrack *track = new AliTOFtrack(*t); // New
+    Double_t x = track->GetX(); //New
+    if (((t->GetStatus()&AliESDtrack::kTRDout)!=0 ) && 
+        ( x >= AliTOFGeometry::RinTOF()) ){
+      track->SetSeedIndex(i);
+      t->UpdateTrackParams(track,AliESDtrack::kTOFout);    
+      new(aTOFTrack[fNseedsTOF]) AliTOFtrack(*track);
+      fNseedsTOF++;
+      seedsTOF1++;
+      delete track;
+    }
+
+    // Propagate the rest of TPCbp  
+
+    else {
+      if(track->PropagateToInnerTOF()){ 
+       track->SetSeedIndex(i);
+       t->UpdateTrackParams(track,AliESDtrack::kTOFout);    
+       new(aTOFTrack[fNseedsTOF]) AliTOFtrack(*track);
+       fNseedsTOF++;
+       seedsTOF2++;
+      }
+      delete track;
+    }
+  }
+
+  AliInfo(Form("Number of TOF seeds %i",fNseedsTOF));
+  AliInfo(Form("Number of TOF seeds Type 1 %i",seedsTOF1));
+  AliInfo(Form("Number of TOF seeds Type 2 %i",seedsTOF2));
+
+  // Sort according uncertainties on track position 
+  fTracks->Sort();
+
+}
+//_________________________________________________________________________
+void AliTOFtracker::MatchTracks( Bool_t mLastStep){
+
+
+  // Parameters used/regulating the reconstruction
+
+  static Float_t corrLen=0.75;
+  static Float_t detDepth=15.3;
+  static Float_t padDepth=0.5;
+
+  Float_t dY=AliTOFGeometry::XPad(); 
+  Float_t dZ=AliTOFGeometry::ZPad(); 
+
+  Float_t sensRadius = fRecoParam->GetSensRadius();
+  Float_t stepSize   = fRecoParam->GetStepSize();
+  Float_t scaleFact   = fRecoParam->GetWindowScaleFact();
+  Float_t dyMax=fRecoParam->GetWindowSizeMaxY(); 
+  Float_t dzMax=fRecoParam->GetWindowSizeMaxZ();
+  Float_t dCut=fRecoParam->GetDistanceCut();
+  Double_t maxChi2=fRecoParam->GetMaxChi2TRD();
+  Bool_t timeWalkCorr    = fRecoParam->GetTimeWalkCorr();
+  if(!mLastStep){
+    AliDebug(1,"++++++++++++++TOF Reconstruction Parameters:++++++++++++ \n");
+    AliDebug(1,Form("TOF sens radius: %f",sensRadius));
+    AliDebug(1,Form("TOF step size: %f",stepSize));
+    AliDebug(1,Form("TOF Window scale factor: %f",scaleFact));
+    AliDebug(1,Form("TOF Window max dy: %f",dyMax));
+    AliDebug(1,Form("TOF Window max dz: %f",dzMax));
+    AliDebug(1,Form("TOF distance Cut: %f",dCut));
+    AliDebug(1,Form("TOF Max Chi2: %f",maxChi2));
+    AliDebug(1,Form("Time Walk Correction? : %d",timeWalkCorr));   
+  }
+  //Match ESD tracks to clusters in TOF
+
+
+  // Get the number of propagation steps
+
+  Int_t nSteps=(Int_t)(detDepth/stepSize);
+
+  //PH Arrays (moved outside of the loop)
+
+  Float_t * trackPos[4];
+  for (Int_t ii=0; ii<4; ii++) trackPos[ii] = new Float_t[nSteps];
+  Int_t * clind = new Int_t[fN];
+  
+  for (Int_t iseed=0; iseed<fNseedsTOF; iseed++) {
+
+    AliTOFtrack *track =(AliTOFtrack*)fTracks->UncheckedAt(iseed);
+    AliESDtrack *t =(AliESDtrack*)fSeeds->UncheckedAt(track->GetSeedIndex());
+    if(t->GetTOFsignal()>0. ) continue;
+    AliTOFtrack *trackTOFin =new AliTOFtrack(*track);
+
+    // Some init
+
+    Int_t         index[10000];
+    Float_t        dist[10000];
+    Float_t       distZ[10000];
+    Float_t       cxpos[10000];
+    Float_t       crecL[10000];
+    TGeoHMatrix   global[1000];
+     
+    // Determine a window around the track
+
+    Double_t x,par[5]; 
+    trackTOFin->GetExternalParameters(x,par);
+    Double_t cov[15]; 
+    trackTOFin->GetExternalCovariance(cov);
+
+    Double_t dphi=
+      scaleFact*
+      ((5*TMath::Sqrt(cov[0]) + 0.5*dY + 2.5*TMath::Abs(par[2]))/sensRadius); 
+    Double_t dz=
+       scaleFact*
+       (5*TMath::Sqrt(cov[2]) + 0.5*dZ + 2.5*TMath::Abs(par[3]));
+
+    Double_t phi=TMath::ATan2(par[0],x) + trackTOFin->GetAlpha();
+    if (phi<-TMath::Pi())phi+=2*TMath::Pi();
+    if (phi>=TMath::Pi())phi-=2*TMath::Pi();
+    Double_t z=par[1];   
+
+    //upper limit on window's size.
+
+    if(dz> dzMax) dz=dzMax;
+    if(dphi*sensRadius> dyMax) dphi=dyMax/sensRadius;
+
+
+    Int_t nc=0;
+
+    // find the clusters in the window of the track
+
+    for (Int_t k=FindClusterIndex(z-dz); k<fN; k++) {
+
+      AliTOFcluster *c=fClusters[k];
+      if (c->GetZ() > z+dz) break;
+      if (c->IsUsed()) continue;
+
+      if (!c->GetStatus()) {
+             AliDebug(1,"Cluster in channel declared bad!");
+             continue; // skip bad channels as declared in OCDB
+      }
+
+      Double_t dph=TMath::Abs(c->GetPhi()-phi);
+      if (dph>TMath::Pi()) dph-=2.*TMath::Pi();
+      if (TMath::Abs(dph)>dphi) continue;
+
+      Double_t yc=(c->GetPhi() - trackTOFin->GetAlpha())*c->GetR();
+      Double_t p[2]={yc, c->GetZ()};
+      Double_t cov2[3]= {dY*dY/12., 0., dZ*dZ/12.};
+      if (trackTOFin->AliExternalTrackParam::GetPredictedChi2(p,cov2) > maxChi2)continue;
+
+      clind[nc] = k;      
+      Char_t path[100];
+      Int_t ind[5];
+      ind[0]=c->GetDetInd(0);
+      ind[1]=c->GetDetInd(1);
+      ind[2]=c->GetDetInd(2);
+      ind[3]=c->GetDetInd(3);
+      ind[4]=c->GetDetInd(4);
+      fGeom->GetVolumePath(ind,path);
+      gGeoManager->cd(path);
+      global[nc] = *gGeoManager->GetCurrentMatrix();
+      nc++;
+    }
+
+    //start fine propagation 
+
+    Int_t nStepsDone = 0;
+    for( Int_t istep=0; istep<nSteps; istep++){ 
+
+      Float_t xs=AliTOFGeometry::RinTOF()+istep*0.1;
+      Double_t ymax=xs*TMath::Tan(0.5*AliTOFGeometry::GetAlpha());
+
+      Bool_t skip=kFALSE;
+      Double_t ysect=trackTOFin->GetYat(xs,skip);
+      if (skip) break;
+      if (ysect > ymax) {
+       if (!trackTOFin->Rotate(AliTOFGeometry::GetAlpha())) {
+         break;
+       }
+      } else if (ysect <-ymax) {
+       if (!trackTOFin->Rotate(AliTOFGeometry::GetAlpha())) {
+         break;
+       }
+      }
+
+      if(!trackTOFin->PropagateTo(xs)) {
+       break;
+      }
+
+      nStepsDone++;
+
+      // store the running point (Globalrf) - fine propagation     
+
+      Double_t r[3];
+      trackTOFin->GetXYZ(r);
+      trackPos[0][istep]= (Float_t) r[0];
+      trackPos[1][istep]= (Float_t) r[1];
+      trackPos[2][istep]= (Float_t) r[2];   
+      trackPos[3][istep]= trackTOFin->GetIntegratedLength();
+    }
+
+
+    Int_t nfound = 0;
+    Bool_t accept = kFALSE;
+    Bool_t isInside =kFALSE;
+    for (Int_t istep=0; istep<nStepsDone; istep++) {
+
+      Float_t ctrackPos[3];    
+
+      ctrackPos[0]= trackPos[0][istep];
+      ctrackPos[1]= trackPos[1][istep];
+      ctrackPos[2]= trackPos[2][istep];
+
+      //now see whether the track matches any of the TOF clusters            
+
+      Float_t dist3d[3];
+      accept=kFALSE;
+      for (Int_t i=0; i<nc; i++){
+        isInside=fGeom->IsInsideThePad(global[i],ctrackPos,dist3d);
+
+        if( mLastStep){
+          Float_t xLoc=dist3d[0];
+          Float_t rLoc=TMath::Sqrt(dist3d[1]*dist3d[1]+dist3d[2]*dist3d[2]);
+         accept = (TMath::Abs(xLoc)<padDepth*0.5 && rLoc<dCut);
+       }
+       else{
+         accept = isInside;
+       }
+       if(accept){
+         dist[nfound]=TMath::Sqrt(dist3d[0]*dist3d[0]+dist3d[1]*dist3d[1]+dist3d[2]*dist3d[2]);
+         distZ[nfound]=dist3d[2];
+         crecL[nfound]=trackPos[3][istep];
+         index[nfound]=clind[i]; // store cluster id       
+         cxpos[nfound]=AliTOFGeometry::RinTOF()+istep*0.1; //store prop.radius
+         nfound++;
+         if(accept &&!mLastStep)break;
+       }//end if accept
+      } //end for on the clusters
+      if(accept &&!mLastStep)break;
+    } //end for on the steps     
+
+
+
+    if (nfound == 0 ) {
+      fnunmatch++;
+      delete trackTOFin;
+      continue;
+    }
+    
+    fnmatch++;
+
+    // now choose the cluster to be matched with the track.
+
+    Int_t idclus=-1;
+    Float_t  recL = 0.;
+    Float_t  xpos=0.;
+    Float_t  mindist=1000.;
+    Float_t  mindistZ=0.;
+    for (Int_t iclus= 0; iclus<nfound;iclus++){
+      if (dist[iclus]< mindist){
+       mindist = dist[iclus];
+       mindistZ = distZ[iclus];
+       xpos = cxpos[iclus];
+        idclus =index[iclus]; 
+        recL=crecL[iclus]+corrLen*0.5;
+      }
+    }
+
+
+    AliTOFcluster *c=fClusters[idclus];
+
+    AliDebug(2, Form("%7i     %7i     %10i     %10i  %10i  %10i      %7i",
+                    iseed,
+                    fnmatch-1,
+                    TMath::Abs(trackTOFin->GetLabel()),
+                    c->GetLabel(0), c->GetLabel(1), c->GetLabel(2),
+                    idclus)); // AdC
+
+    c->Use(); 
+
+    // Track length correction for matching Step 2 
+
+    if(mLastStep){
+      Float_t rc=TMath::Sqrt(c->GetR()*c->GetR() + c->GetZ()*c->GetZ());
+      Float_t rt=TMath::Sqrt(trackPos[0][70]*trackPos[0][70]
+                            +trackPos[1][70]*trackPos[1][70]
+                            +trackPos[2][70]*trackPos[2][70]);
+      Float_t dlt=rc-rt;      
+      recL=trackPos[3][70]+dlt;
+    }    
+
+    if (
+       (c->GetLabel(0)==TMath::Abs(trackTOFin->GetLabel()))
+       ||
+       (c->GetLabel(1)==TMath::Abs(trackTOFin->GetLabel()))
+       ||
+       (c->GetLabel(2)==TMath::Abs(trackTOFin->GetLabel()))
+       ) {
+      fngoodmatch++;
+
+       AliDebug(2,Form(" track label good %5i",trackTOFin->GetLabel()));
+
+    }
+    else{
+      fnbadmatch++;
+
+      AliDebug(2,Form(" track label  bad %5i",trackTOFin->GetLabel()));
+
+    }
+
+    delete trackTOFin;
+
+    //  Store quantities to be used in the TOF Calibration
+    Float_t tToT=AliTOFGeometry::ToTBinWidth()*c->GetToT()*1E-3; // in ns
+    t->SetTOFsignalToT(tToT);
+    Float_t rawTime=AliTOFGeometry::TdcBinWidth()*c->GetTDCRAW()+32; // RAW time,in ps
+    t->SetTOFsignalRaw(rawTime);
+    t->SetTOFsignalDz(mindistZ);
+    AliDebug(2,Form(" Setting TOF raw time: %f, z distance: %f time: %f = ",rawTime,mindistZ));    
+    Int_t ind[5];
+    ind[0]=c->GetDetInd(0);
+    ind[1]=c->GetDetInd(1);
+    ind[2]=c->GetDetInd(2);
+    ind[3]=c->GetDetInd(3);
+    ind[4]=c->GetDetInd(4);
+    Int_t calindex = AliTOFGeometry::GetIndex(ind);
+    t->SetTOFCalChannel(calindex);
+
+    // keep track of the track labels in the matched cluster
+    Int_t tlab[3];
+    tlab[0]=c->GetLabel(0);
+    tlab[1]=c->GetLabel(1);
+    tlab[2]=c->GetLabel(2);
+    AliDebug(2,Form(" tdc time of the matched track %i = ",c->GetTDC()));    
+    Double_t tof=AliTOFGeometry::TdcBinWidth()*c->GetTDC()+32; // in ps
+    AliDebug(2,Form(" tof time of the matched track: %f = ",tof));    
+    Double_t tofcorr=tof;
+    if(timeWalkCorr)tofcorr=CorrectTimeWalk(mindistZ,tof);
+    AliDebug(2,Form(" tof time of the matched track, after TW corr: %f = ",tofcorr));    
+    //Set TOF time signal and pointer to the matched cluster
+    t->SetTOFsignal(tofcorr);
+    t->SetTOFcluster(idclus); // pointing to the recPoints tree
+
+    //Tracking info
+    Double_t time[AliPID::kSPECIES]; t->GetIntegratedTimes(time);
+    Double_t mom=t->GetP();
+    for(Int_t j=0;j<AliPID::kSPECIES;j++){
+      Double_t mass=AliPID::ParticleMass(j);
+      time[j]+=(recL-trackPos[3][0])/3e-2*TMath::Sqrt(mom*mom+mass*mass)/mom;
+    }
+
+    AliTOFtrack *trackTOFout = new AliTOFtrack(*t); 
+    trackTOFout->PropagateTo(xpos);
+    t->UpdateTrackParams(trackTOFout,AliESDtrack::kTOFout);    
+    t->SetIntegratedLength(recL);
+    t->SetIntegratedTimes(time);
+    t->SetTOFLabel(tlab);
+
+    // Fill Reco-QA histos for Reconstruction
+    fHRecNClus->Fill(nc);
+    fHRecDist->Fill(mindist);
+    fHRecSigYVsP->Fill(mom,TMath::Sqrt(cov[0]));
+    fHRecSigZVsP->Fill(mom,TMath::Sqrt(cov[2]));
+    fHRecSigYVsPWin->Fill(mom,dphi*sensRadius);
+    fHRecSigZVsPWin->Fill(mom,dz);
+
+    // Fill Tree for on-the-fly offline Calibration
+
+    if ( !((t->GetStatus() & AliESDtrack::kTIME)==0 )){    
+      fIch=calindex;
+      fToT=tToT;
+      fTime=rawTime;
+      fExpTimePi=time[2];
+      fExpTimeKa=time[3];
+      fExpTimePr=time[4];
+      fCalTree->Fill();
+    }
+    delete trackTOFout;
+  }
+  for (Int_t ii=0; ii<4; ii++) delete [] trackPos[ii];
+  delete [] clind;
+}
+//_________________________________________________________________________
+Int_t AliTOFtracker::LoadClusters(TTree *cTree) {
+  //--------------------------------------------------------------------
+  //This function loads the TOF clusters
+  //--------------------------------------------------------------------
+
+  Int_t npadX = AliTOFGeometry::NpadX();
+  Int_t npadZ = AliTOFGeometry::NpadZ();
+  Int_t nStripA = AliTOFGeometry::NStripA();
+  Int_t nStripB = AliTOFGeometry::NStripB();
+  Int_t nStripC = AliTOFGeometry::NStripC();
+
+  TBranch *branch=cTree->GetBranch("TOF");
+  if (!branch) { 
+    AliError("can't get the branch with the TOF clusters !");
+    return 1;
+  }
+
+  static TClonesArray dummy("AliTOFcluster",10000);
+  dummy.Clear();
+  TClonesArray *clusters=&dummy;
+  branch->SetAddress(&clusters);
+
+  cTree->GetEvent(0);
+  Int_t nc=clusters->GetEntriesFast();
+  fHDigNClus->Fill(nc);
+
+  AliInfo(Form("Number of clusters: %d",nc));
+
+  for (Int_t i=0; i<nc; i++) {
+    AliTOFcluster *c=(AliTOFcluster*)clusters->UncheckedAt(i);
+    fClusters[i]=new AliTOFcluster(*c); fN++;
+
+  // Fill Digits QA histos
+    Int_t isector = c->GetDetInd(0);
+    Int_t iplate = c->GetDetInd(1);
+    Int_t istrip = c->GetDetInd(2);
+    Int_t ipadX = c->GetDetInd(4);
+    Int_t ipadZ = c->GetDetInd(3);
+
+    Float_t time =(AliTOFGeometry::TdcBinWidth()*c->GetTDC())*1E-3; // in ns
+    Float_t tot = (AliTOFGeometry::TdcBinWidth()*c->GetToT())*1E-3;//in ns
+    Int_t stripOffset = 0;
+    switch (iplate) {
+    case 0:
+      stripOffset = 0;
+      break;
+    case 1:
+      stripOffset = nStripC;
+      break;
+    case 2:
+      stripOffset = nStripC+nStripB;
+      break;
+    case 3:
+      stripOffset = nStripC+nStripB+nStripA;
+      break;
+    case 4:
+      stripOffset = nStripC+nStripB+nStripA+nStripB;
+      break;
+    default:
+      AliError(Form("Wrong plate number in TOF (%d) !",iplate));
+      break;
+    };
+    Int_t zindex=npadZ*(istrip+stripOffset)+(ipadZ+1);
+    Int_t phiindex=npadX*isector+ipadX+1;
+    fHDigClusMap->Fill(zindex,phiindex);
+    fHDigClusTime->Fill(time);
+    fHDigClusToT->Fill(tot);
+
+  }
+
+
+  return 0;
+}
+//_________________________________________________________________________
+void AliTOFtracker::UnloadClusters() {
+  //--------------------------------------------------------------------
+  //This function unloads TOF clusters
+  //--------------------------------------------------------------------
+  for (Int_t i=0; i<fN; i++) {
+    delete fClusters[i];
+    fClusters[i] = 0x0;
+  }
+  fN=0;
+}
+
+//_________________________________________________________________________
+Int_t AliTOFtracker::FindClusterIndex(Double_t z) const {
+  //--------------------------------------------------------------------
+  // This function returns the index of the nearest cluster 
+  //--------------------------------------------------------------------
+  if (fN==0) return 0;
+  if (z <= fClusters[0]->GetZ()) return 0;
+  if (z > fClusters[fN-1]->GetZ()) return fN;
+  Int_t b=0, e=fN-1, m=(b+e)/2;
+  for (; b<e; m=(b+e)/2) {
+    if (z > fClusters[m]->GetZ()) b=m+1;
+    else e=m; 
+  }
+  return m;
+}
+
+//_________________________________________________________________________
+Bool_t AliTOFtracker::GetTrackPoint(Int_t index, AliTrackPoint& p) const
+{
+  // Get track space point with index i
+  // Coordinates are in the global system
+  AliTOFcluster *cl = fClusters[index];
+  Float_t xyz[3];
+  xyz[0] = cl->GetR()*TMath::Cos(cl->GetPhi());
+  xyz[1] = cl->GetR()*TMath::Sin(cl->GetPhi());
+  xyz[2] = cl->GetZ();
+  Float_t phiangle = (Int_t(cl->GetPhi()*TMath::RadToDeg()/20.)+0.5)*20.*TMath::DegToRad();
+  Float_t sinphi = TMath::Sin(phiangle), cosphi = TMath::Cos(phiangle);
+  Float_t tiltangle = AliTOFGeometry::GetAngles(cl->GetDetInd(1),cl->GetDetInd(2))*TMath::DegToRad();
+  Float_t sinth = TMath::Sin(tiltangle), costh = TMath::Cos(tiltangle);
+  Float_t sigmay2 = AliTOFGeometry::XPad()*AliTOFGeometry::XPad()/12.;
+  Float_t sigmaz2 = AliTOFGeometry::ZPad()*AliTOFGeometry::ZPad()/12.;
+  Float_t cov[6];
+  cov[0] = sinphi*sinphi*sigmay2 + cosphi*cosphi*sinth*sinth*sigmaz2;
+  cov[1] = -sinphi*cosphi*sigmay2 + sinphi*cosphi*sinth*sinth*sigmaz2;
+  cov[2] = -cosphi*sinth*costh*sigmaz2;
+  cov[3] = cosphi*cosphi*sigmay2 + sinphi*sinphi*sinth*sinth*sigmaz2;
+  cov[4] = -sinphi*sinth*costh*sigmaz2;
+  cov[5] = costh*costh*sigmaz2;
+  p.SetXYZ(xyz[0],xyz[1],xyz[2],cov);
+
+  // Detector numbering scheme
+  Int_t nSector = AliTOFGeometry::NSectors();
+  Int_t nPlate  = AliTOFGeometry::NPlates();
+  Int_t nStripA = AliTOFGeometry::NStripA();
+  Int_t nStripB = AliTOFGeometry::NStripB();
+  Int_t nStripC = AliTOFGeometry::NStripC();
+
+  Int_t isector = cl->GetDetInd(0);
+  if (isector >= nSector)
+    AliError(Form("Wrong sector number in TOF (%d) !",isector));
+  Int_t iplate = cl->GetDetInd(1);
+  if (iplate >= nPlate)
+    AliError(Form("Wrong plate number in TOF (%d) !",iplate));
+  Int_t istrip = cl->GetDetInd(2);
+
+  Int_t stripOffset = 0;
+  switch (iplate) {
+  case 0:
+    stripOffset = 0;
+    break;
+  case 1:
+    stripOffset = nStripC;
+    break;
+  case 2:
+    stripOffset = nStripC+nStripB;
+    break;
+  case 3:
+    stripOffset = nStripC+nStripB+nStripA;
+    break;
+  case 4:
+    stripOffset = nStripC+nStripB+nStripA+nStripB;
+    break;
+  default:
+    AliError(Form("Wrong plate number in TOF (%d) !",iplate));
+    break;
+  };
+
+  Int_t idet = (2*(nStripC+nStripB)+nStripA)*isector +
+               stripOffset +
+               istrip;
+  UShort_t volid = AliGeomManager::LayerToVolUID(AliGeomManager::kTOF,idet);
+  p.SetVolumeID((UShort_t)volid);
+  return kTRUE;
+}
+//_________________________________________________________________________
+void AliTOFtracker::InitCheckHists() {
+
+  //Init histos for Digits/Reco QA and Calibration
+
+
+  TDirectory *dir = gDirectory;
+  TFile *logFileTOF = 0;
+
+  TSeqCollection *list = gROOT->GetListOfFiles();
+  int n = list->GetEntries();
+  Bool_t isThere=kFALSE;
+  for(int i=0; i<n; i++) {
+    logFileTOF = (TFile*)list->At(i);
+    if (strstr(logFileTOF->GetName(), "TOFQA.root")){
+      isThere=kTRUE;
+      break;
+    } 
+  }
+
+  if(!isThere)logFileTOF = new TFile( "TOFQA.root","RECREATE");
+  logFileTOF->cd(); 
+
+  fCalTree = new TTree("CalTree", "Tree for TOF calibration");
+  fCalTree->Branch("TOFchannelindex",&fIch,"iTOFch/I");
+  fCalTree->Branch("ToT",&fToT,"TOFToT/F");
+  fCalTree->Branch("TOFtime",&fTime,"TOFtime/F");
+  fCalTree->Branch("PionExpTime",&fExpTimePi,"PiExpTime/F");
+  fCalTree->Branch("KaonExpTime",&fExpTimeKa,"KaExpTime/F");
+  fCalTree->Branch("ProtonExpTime",&fExpTimePr,"PrExpTime/F");
+
+  //Digits "QA" 
+  fHDigClusMap = new TH2F("TOFDig_ClusMap", "",182,0.5,182.5,864, 0.5,864.5);  
+  fHDigNClus = new TH1F("TOFDig_NClus", "",200,0.5,200.5);  
+  fHDigClusTime = new TH1F("TOFDig_ClusTime", "",2000,0.,200.);  
+  fHDigClusToT = new TH1F("TOFDig_ClusToT", "",500,0.,100);  
+
+  //Reco "QA"
+  fHRecNClus =new TH1F("TOFRec_NClusW", "",50,0.5,50.5);
+  fHRecDist=new TH1F("TOFRec_Dist", "",50,0.5,10.5);
+  fHRecSigYVsP=new TH2F("TOFDig_SigYVsP", "",40,0.,4.,100, 0.,5.);
+  fHRecSigZVsP=new TH2F("TOFDig_SigZVsP", "",40,0.,4.,100, 0.,5.);
+  fHRecSigYVsPWin=new TH2F("TOFDig_SigYVsPWin", "",40,0.,4.,100, 0.,50.);
+  fHRecSigZVsPWin=new TH2F("TOFDig_SigZVsPWin", "",40,0.,4.,100, 0.,50.);
+
+  dir->cd();
+
+}
+
+//_________________________________________________________________________
+void AliTOFtracker::SaveCheckHists() {
+
+  //write histos for Digits/Reco QA and Calibration
+
+  TDirectory *dir = gDirectory;
+  TFile *logFileTOF = 0;
+
+  TSeqCollection *list = gROOT->GetListOfFiles();
+  int n = list->GetEntries();
+  Bool_t isThere=kFALSE;
+  for(int i=0; i<n; i++) {
+    logFileTOF = (TFile*)list->At(i);
+    if (strstr(logFileTOF->GetName(), "TOFQA.root")){
+      isThere=kTRUE;
+      break;
+    } 
+  }
+   
+  if(!isThere) {
+         AliError(Form("File TOFQA.root not found!! not wring histograms...."));
+         return;
+  }
+  logFileTOF->cd(); 
+  fHDigClusMap->Write(fHDigClusMap->GetName(), TObject::kOverwrite);
+  fHDigNClus->Write(fHDigNClus->GetName(), TObject::kOverwrite);
+  fHDigClusTime->Write(fHDigClusTime->GetName(), TObject::kOverwrite);
+  fHDigClusToT->Write(fHDigClusToT->GetName(), TObject::kOverwrite);
+  fHRecNClus->Write(fHRecNClus->GetName(), TObject::kOverwrite);
+  fHRecDist->Write(fHRecDist->GetName(), TObject::kOverwrite);
+  fHRecSigYVsP->Write(fHRecSigYVsP->GetName(), TObject::kOverwrite);
+  fHRecSigZVsP->Write(fHRecSigZVsP->GetName(), TObject::kOverwrite);
+  fHRecSigYVsPWin->Write(fHRecSigYVsPWin->GetName(), TObject::kOverwrite);
+  fHRecSigZVsPWin->Write(fHRecSigZVsPWin->GetName(), TObject::kOverwrite);
+  fCalTree->Write(fCalTree->GetName(),TObject::kOverwrite);
+  logFileTOF->Flush();  
+
+  dir->cd();
+  }
+//_________________________________________________________________________
+Float_t AliTOFtracker::CorrectTimeWalk( Float_t dist, Float_t tof) {
+
+  //dummy, for the moment
+  Float_t tofcorr=0.;
+  if(dist<AliTOFGeometry::ZPad()*0.5){
+    tofcorr=tof;
+    //place here the actual correction
+  }else{
+    tofcorr=tof; 
+  } 
+  return tofcorr;
+}
+//_________________________________________________________________________
+Float_t AliTOFtracker::GetTimeZerofromT0(AliESDEvent *event) const {
+
+  //Returns TimeZero as measured by T0 detector
+
+  return event->GetT0();
+}
+//_________________________________________________________________________
+Float_t AliTOFtracker::GetTimeZerofromTOF(AliESDEvent * /*event*/) const {
+
+  //dummy, for the moment. T0 algorithm using tracks on TOF
+  {
+    //place T0 algo here...
+  }
+  return 0.;
+}
+//_________________________________________________________________________
+
+void AliTOFtracker::FillClusterArray(TObjArray* arr) const
+{
+  //
+  // Returns the TOF cluster array
+  //
+
+  if (fN==0)
+    arr = 0x0;
+  else
+    for (Int_t i=0; i<fN; ++i) arr->Add(fClusters[i]);
+
+}