[u/mrichter/AliRoot.git] / ANALYSIS / AliAnalysisAlien.h

#ifndef ALIANALYSISALIEN_H
#define ALIANALYSISALIEN_H
/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 * See cxx source for full Copyright notice                               */

// Author: Mihaela Gheata, 01/09/2008

//==============================================================================
//   AliAnalysisAlien - AliEn utility class. Provides interface for creating
// a personalized JDL, finding and creating a dataset.
//==============================================================================

#ifndef ALIANALYSISGRID_H
#include "AliAnalysisGrid.h"
#endif

#ifndef ROOT_TString
#include <TString.h>
#endif

#ifndef ROOT_TMath
#include <TMath.h>
#endif

#ifndef ROOT_TMap
#include <TMap.h>
#endif

class AliAnalysisManager;
class AliAnalysisTaskCfg;
class TGridJDL;

class AliAnalysisAlien : public AliAnalysisGrid {

public:

   AliAnalysisAlien();
   AliAnalysisAlien(const char *name);
   virtual ~AliAnalysisAlien();
   AliAnalysisAlien(const AliAnalysisAlien& other); 
   AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
// Setters   
   virtual void        AddAdditionalLibrary(const char *name);
   virtual void        AddIncludePath(const char *path);
   virtual void        AddRunNumber(Int_t run);
   virtual void        AddRunNumber(const char *run);
   virtual void        AddRunList(const char *runList);
   virtual void        AddDataFile(const char *lfn);
   virtual void        AddExternalPackage(const char *name);
   virtual void        SetExecutable(const char *name="analysis.sh")     {fExecutable = name;}
   virtual void        SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;}
   virtual void        SetArguments(const char *name="")                 {fArguments = name;}
   virtual void        SetExecutableArgs(const char *name="")            {fExecutableArgs = name;}
   virtual void        SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
   virtual void        SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
   virtual void        SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
   virtual void        SetAdditionalLibs(const char *list)               {fAdditionalLibs = list;}
   virtual void        SetAdditionalRootLibs(const char *list)           {fAdditionalRootLibs = list;}
   virtual void        SetPrice(Int_t price=1)                           {fPrice = price;}
   virtual void        SetRunRange(Int_t min, Int_t max)                 {fRunRange[0] = min; fRunRange[1] = max;}
   virtual void        SetJobTag(const char *tag="")                     {fJobTag = tag;}
   virtual void        SetNrunsPerMaster(Int_t nruns=1)                  {fNrunsPerMaster = nruns;}
   virtual void        SetMaxMergeFiles(Int_t nfiles)                    {fMaxMergeFiles = nfiles;}
   virtual void        SetMaxMergeStages(Int_t nstages)                  {fMaxMergeStages = nstages;}
   virtual void        SetSplitMode(const char *type="se")               {fSplitMode = type;}
   virtual void        SetSplitMaxInputFileNumber(Int_t nfiles=100)      {fSplitMaxInputFileNumber = nfiles;}
   virtual void        SetAPIVersion(const char *version)                {fAPIVersion = version;}
   virtual void        SetROOTVersion(const char *version)               {fROOTVersion = version;}
   virtual void        SetAliROOTVersion(const char *version)            {fAliROOTVersion=version;}
   virtual void        SetUser(const char *user)                         {fUser = user;}
   virtual void        SetTTL(Int_t ttl=30000)                           {fTTL = ttl;}
   virtual void        SetGridWorkingDir(const char *name="workdir")     {fGridWorkingDir = name;}
   virtual void        SetGridDataDir(const char *name)                  {fGridDataDir = name;}
   virtual void        SetDataPattern(const char *pattern="*AliESDs.root") {fDataPattern = pattern;}
   virtual void        SetFriendChainName(const char *name="")           {fFriendChainName = name;}
   virtual void        SetDefaultOutputs(Bool_t flag);
   virtual void        SetGridOutputDir(const char *name="output")       {fGridOutputDir = name;}
   virtual void        SetOutputArchive(const char *list="log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2");
   virtual void        SetOutputFiles(const char *list);
   virtual void        SetOutputToRunNo(Int_t mode=1)                    {fOutputToRunNo = mode;}
   virtual void        SetInputFormat(const char *format="xml-single")   {fInputFormat = format;}
   virtual void        SetMaxInitFailed(Int_t nfail=5)                   {fMaxInitFailed = nfail;}
   virtual void        SetTerminateFiles(const char *list)               {fTerminateFiles = list;}
   virtual void        SetMergeExcludes(const char *list)                {fMergeExcludes = list;};
   virtual void        SetMergeViaJDL(Bool_t on=kTRUE)                   {fMergeViaJDL = on ? 1 : 0;}
   virtual void        SetMergeDirName(const char *name)                 {fMergeDirName = name;}
   virtual void        SetMasterResubmitThreshold(Int_t percentage)      {fMasterResubmitThreshold = percentage;}
   virtual void        SetNtestFiles(Int_t nfiles)                       {fNtestFiles = nfiles;}
   virtual void        SetNumberOfReplicas(Int_t ncopies)                {fNreplicas = TMath::Min(ncopies,4);}
   virtual void        SetJDLName(const char *name="analysis.jdl")       {fJDLName = name;}
   virtual void        SetPreferedSE(const char *se);
   virtual void        SetProductionMode(Int_t mode=1)                   {fProductionMode = mode;}
   virtual void        SetRegisterExcludes(const char *list)             {fRegisterExcludes = list;}
   virtual void        SetRunPrefix(const char *prefix);
   virtual void        SetOutputSingleFolder(const char *folder)         {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
   virtual void        SetFastReadOption(Bool_t on=kTRUE)                {fFastReadOption = on ? 1 : 0;}
   virtual void        SetOverwriteMode(Bool_t on=kTRUE)                 {fOverwriteMode = on ? 1 : 0;}

   TGridJDL           *GetGridJDL() const {return fGridJDL;}
   TGridJDL           *GetMergingJDL() const {return fMergingJDL;}
   const char         *GetGridOutputDir() const                          {return fGridOutputDir;}
//Utilities
   void                AddModule(AliAnalysisTaskCfg *module);
   void                AddModules(TObjArray *list);
   AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename="");
   Int_t               GetNmodules() const;
   AliAnalysisTaskCfg *GetModule(const char *name);
   Bool_t              LoadModules();
   Bool_t              GenerateTest(const char *name, const char *modname="");
   Bool_t              GenerateTrain(const char *name);
   virtual Bool_t      CreateDataset(const char *pattern);
   Bool_t              CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output="data.txt", const char *archivefile="", const char *outputdir="data");
   virtual Bool_t      CreateJDL();
   virtual void        EnablePackage(const char *package);
   static Bool_t       DirectoryExists(const char *lfn);
   static Bool_t       FileExists(const char *lfn);
   static const char  *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
   const char         *GetListOfFiles(const char *type);
   Bool_t              CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl="");
   static AliAnalysisManager *LoadAnalysisManager(const char *fname);
   static Bool_t       MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0);
   virtual Bool_t      MergeOutputs();
   virtual void        Print(Option_t *option="") const;
   virtual Bool_t      StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
   static Bool_t       SetupPar(const char *package);
   virtual Bool_t      Submit();
   virtual Bool_t      SubmitMerging();
   static Int_t        SubmitSingleJob(const char *query);
   virtual void        WriteAnalysisFile();
   virtual void        WriteAnalysisMacro();
   virtual void        WriteMergingMacro();
   virtual void        WriteMergeExecutable();
   virtual void        WriteExecutable();
   virtual Bool_t      WriteJDL(Bool_t copy);
   virtual void        WriteProductionFile(const char *filename) const;
   virtual void        WriteValidationScript(Bool_t merge=kFALSE);

// PROOF mode
   virtual void        SetProofCluster(const char *cluster)              {fProofCluster = cluster;}
   virtual void        SetProofDataSet(const char *dataset)              {fProofDataSet = dataset;}
   virtual const char *GetProofDataSet() const                           {return fProofDataSet.Data();}
   virtual void        SetProofParameter(const char *pname, const char *value);
   const char         *GetProofParameter(const char *pname) const;
   virtual void        SetProofReset(Int_t mode)                         {fProofReset = mode;}
   virtual void        SetNproofWorkers(Int_t nworkers)                  {fNproofWorkers = nworkers;}
   virtual void        SetNproofWorkersPerSlave(Int_t nworkers)          {fNproofWorkersPerSlave = nworkers;}
   virtual void        SetRootVersionForProof(const char *version)       {fRootVersionForProof = version;}
   virtual void        SetAliRootMode(const char *mode)                  {fAliRootMode = mode;}
   // .txt file containing the list of files to be chained in test mode
   virtual void        SetFileForTestMode(const char *filename)          {fFileForTestMode = filename;}
   virtual TChain     *GetChainForTestMode(const char *treeName) const;

protected:
   void                CdWork();
   Bool_t              CheckInputData();
   void                CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags);
   virtual Bool_t      Connect();
   virtual void        SetDefaults();  
   Bool_t              SubmitNext();

   Bool_t              IsCollection(const char *lfn) const;
   virtual Bool_t      IsSingleOutput() const;
   Bool_t              IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
   Bool_t              LoadModule(AliAnalysisTaskCfg *mod);
   Bool_t              CheckDependencies();
   Bool_t              CheckFileCopy(const char *alienpath);

private:
   TGridJDL        *fGridJDL;         //! JDL maker
   TGridJDL        *fMergingJDL;      //! JDL maker
   Int_t            fPrice;           // Grid price for the job;
   Int_t            fTTL;             // Time to live.
   Int_t            fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob
   Int_t            fMaxInitFailed;   // Maximum initial consecutive subjobs accepted to fail
   Int_t            fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio
   Int_t            fNtestFiles;      // Number of files used in the testing case
   Int_t            fRunRange[2];     // Run range
   Int_t            fNrunsPerMaster;  // Number of runs per masterjob
   Int_t            fMaxMergeFiles;   // Maximum number of files to be merged in one chunk
   Int_t            fMaxMergeStages;  // Maximum number of merging stages
   Int_t            fNsubmitted;      // Number of jobs submitted
   Int_t            fProductionMode;  // Production mode (0-off, 1-on)
   Int_t            fOutputToRunNo;   // Use run number as output directory
   Int_t            fMergeViaJDL;     // Enable merging via automatic JDL
   Int_t            fFastReadOption;  // Use xrootd tweaks to reduce timeouts in file access
   Int_t            fOverwriteMode;   // Overwrite existing files if any
   Int_t            fNreplicas;       // Number of replicas for the output files
   Int_t            fNproofWorkers;   // Number of workers in proof mode
   Int_t            fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
   Int_t            fProofReset;      // Proof reset mode: 0=no reset, 1=soft, 2=hard
   TString          fRunNumbers;      // List of runs to be processed
   TString          fExecutable;      // Executable script for AliEn job
   TString          fExecutableCommand;  // Command(s) to be executed in the executable script
   TString          fArguments;       // Arguments for the executable script
   TString          fExecutableArgs;  // arguments added to the executable script after the analysis macro
   TString          fAnalysisMacro;   // Root macro steering the analysis
   TString          fAnalysisSource;  // User analysis implementation (.cxx) file(s)
   TString          fValidationScript; // Name of the validation script
   TString          fAdditionalRootLibs;  // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
   TString          fAdditionalLibs;  // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
   TString          fSplitMode;       // Job split mode
   TString          fAPIVersion;      // API version
   TString          fROOTVersion;     // ROOT version
   TString          fAliROOTVersion;  // AliROOT version
   TString          fExternalPackages; // External packages
   TString          fUser;            // AliEn user name
   TString          fGridWorkingDir;  // AliEn directory containing the input packages
   TString          fGridDataDir;     // AliEn data production directory
   TString          fDataPattern;     // Data pattern for 'find' command
   TString          fGridOutputDir;   // AliEn directory (wrt work dir) where the output should be written
   TString          fOutputArchive;   // List of output archives separated by blancs
   TString          fOutputFiles;     // List of output files separated by blancs
   TString          fInputFormat;     // Input format (xml-single)
   TString          fDatasetName;     // Dataset xml file to be created
   TString          fJDLName;         // JDL file to be generated
   TString          fTerminateFiles;  // List of output files produced during Terminate
   TString          fMergeExcludes;   // List of output files excluded from merging
   TString          fRegisterExcludes; // List of liles not to be registered/merged
   TString          fIncludePath;     // Include path
   TString          fCloseSE;         // Preffered storage element. Taken from alien_CLOSE_SE environment.
   TString          fFriendChainName; // File name to construct friend chain (for AOD)
   TString          fJobTag;          // Job tag
   TString          fOutputSingle;    // Directory name for the output when split is per file
   TString          fRunPrefix;       // Run prefix to be applied to run numbers
   TString          fProofCluster;    // Proof cluster name
   TString          fProofDataSet;    // Proof dataset to be used
   TString          fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
   TString          fRootVersionForProof; // ROOT version to be used in PROOF mode. The default one taken if empty.
   TString          fAliRootMode;     // AliRoot mode among the list supported by the proof cluster
   TString          fMergeDirName;    // Name of the directory that should be added to the output directory
   TObjArray       *fInputFiles;      // List of input files to be processed by the job
   TObjArray       *fPackages;        // List of packages to be used
   TObjArray       *fModules;         // List of AliAnalysisTaskCfg modules
   TMap             fProofParam;      // Key-value pairs for proof mode
   
   ClassDef(AliAnalysisAlien, 20)   // Class providing some AliEn utilities
};
#endif
Commit	Line	Data
c57f56b7	1	#ifndef ALIANALYSISALIEN_H
	2	#define ALIANALYSISALIEN_H
	3	/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	4	* See cxx source for full Copyright notice */
	5
	6	// Author: Mihaela Gheata, 01/09/2008
	7
	8	//==============================================================================
	9	// AliAnalysisAlien - AliEn utility class. Provides interface for creating
	10	// a personalized JDL, finding and creating a dataset.
	11	//==============================================================================
	12
	13	#ifndef ALIANALYSISGRID_H
	14	#include "AliAnalysisGrid.h"
	15	#endif
	16
	17	#ifndef ROOT_TString
	18	#include <TString.h>
	19	#endif
	20
149d288c	21	#ifndef ROOT_TMath
	22	#include <TMath.h>
	23	#endif
	24
28ce6c9c	25	#ifndef ROOT_TMap
	26	#include <TMap.h>
	27	#endif
	28
105631b5	29	class AliAnalysisManager;
77f34eae	30	class AliAnalysisTaskCfg;
c57f56b7	31	class TGridJDL;
	32
	33	class AliAnalysisAlien : public AliAnalysisGrid {
	34
	35	public:
	36
	37	AliAnalysisAlien();
	38	AliAnalysisAlien(const char *name);
	39	virtual ~AliAnalysisAlien();
	40	AliAnalysisAlien(const AliAnalysisAlien& other);
	41	AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
	42	// Setters
37d21c01	43	virtual void AddAdditionalLibrary(const char *name);
f965131e	44	virtual void AddIncludePath(const char *path);
c57f56b7	45	virtual void AddRunNumber(Int_t run);
ee75cfc3	46	virtual void AddRunNumber(const char *run);
98690895	47	virtual void AddRunList(const char *runList);
c57f56b7	48	virtual void AddDataFile(const char *lfn);
648174cf	49	virtual void AddExternalPackage(const char *name);
c57f56b7	50	virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;}
0a1c1f7f	51	virtual void SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;}
c57f56b7	52	virtual void SetArguments(const char *name="") {fArguments = name;}
631c0b05	53	virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;}
c57f56b7	54	virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
c57f56b7	55	virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
d3b18c4c	56	virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
c57f56b7	57	virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;}
d5c6455a	58	virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;}
c57f56b7	59	virtual void SetPrice(Int_t price=1) {fPrice = price;}
a8739e8a	60	virtual void SetRunRange(Int_t min, Int_t max) {fRunRange[0] = min; fRunRange[1] = max;}
c6cb3634	61	virtual void SetJobTag(const char *tag="") {fJobTag = tag;}
319593fb	62	virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;}
16a4353c	63	virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;}
b3e07543	64	virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;}
c57f56b7	65	virtual void SetSplitMode(const char *type="se") {fSplitMode = type;}
c57f56b7	66	virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;}
149d288c	67	virtual void SetAPIVersion(const char *version) {fAPIVersion = version;}
	68	virtual void SetROOTVersion(const char *version) {fROOTVersion = version;}
	69	virtual void SetAliROOTVersion(const char *version) {fAliROOTVersion=version;}
c57f56b7	70	virtual void SetUser(const char *user) {fUser = user;}
	71	virtual void SetTTL(Int_t ttl=30000) {fTTL = ttl;}
	72	virtual void SetGridWorkingDir(const char *name="workdir") {fGridWorkingDir = name;}
	73	virtual void SetGridDataDir(const char *name) {fGridDataDir = name;}
	74	virtual void SetDataPattern(const char pattern="AliESDs.root") {fDataPattern = pattern;}
0df6ccf2	75	virtual void SetFriendChainName(const char *name="") {fFriendChainName = name;}
bb885a9e	76	virtual void SetDefaultOutputs(Bool_t flag);
c57f56b7	77	virtual void SetGridOutputDir(const char *name="output") {fGridOutputDir = name;}
149d288c	78	virtual void SetOutputArchive(const char list="log_archive.zip:std@disk=1 root_archive.zip:*.root@disk=2");
149d288c	79	virtual void SetOutputFiles(const char *list);
cd11251e	80	virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;}
c57f56b7	81	virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;}
c57f56b7	82	virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;}
d3b18c4c	83	virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;}
bb885a9e	84	virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list;};
0f389141	85	virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;}
f47d5cb4	86	virtual void SetMergeDirName(const char *name) {fMergeDirName = name;}
c57f56b7	87	virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;}
bb885a9e	88	virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;}
149d288c	89	virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);}
c57f56b7	90	virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;}
149d288c	91	virtual void SetPreferedSE(const char *se);
a3e84053	92	virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;}
37d21c01	93	virtual void SetRegisterExcludes(const char *list) {fRegisterExcludes = list;}
74013535	94	virtual void SetRunPrefix(const char *prefix);
648174cf	95	virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
0f389141	96	virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;}
0f389141	97	virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;}
c57f56b7	98
0f389141	99	TGridJDL *GetGridJDL() const {return fGridJDL;}
0f389141	100	TGridJDL *GetMergingJDL() const {return fMergingJDL;}
5513444a	101	const char *GetGridOutputDir() const {return fGridOutputDir;}
c57f56b7	102	//Utilities
77f34eae	103	void AddModule(AliAnalysisTaskCfg *module);
77f34eae	104	void AddModules(TObjArray *list);
3e40fd4c	105	AliAnalysisManager CreateAnalysisManager(const char name, const char *filename="");
77f34eae	106	Int_t GetNmodules() const;
	107	AliAnalysisTaskCfg GetModule(const char name);
	108	Bool_t LoadModules();
21ca8e59	109	Bool_t GenerateTest(const char name, const char modname="");
139fe6ba	110	Bool_t GenerateTrain(const char *name);
c57f56b7	111	virtual Bool_t CreateDataset(const char *pattern);
43b807f6	112	Bool_t CopyLocalDataset(const char griddir, const char pattern, Int_t nfiles, const char output="data.txt", const char archivefile="", const char *outputdir="data");
c57f56b7	113	virtual Bool_t CreateJDL();
4e5c5506	114	virtual void EnablePackage(const char *package);
923e2ca5	115	static Bool_t DirectoryExists(const char *lfn);
5513444a	116	static Bool_t FileExists(const char *lfn);
a03be957	117	static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
f790bc1b	118	const char GetListOfFiles(const char type);
b3e07543	119	Bool_t CheckMergedFiles(const char filename, const char aliendir, Int_t nperchunk, const char *jdl="");
105631b5	120	static AliAnalysisManager LoadAnalysisManager(const char fname);
b3e07543	121	static Bool_t MergeOutput(const char output, const char basedir, Int_t nmaxmerge, Int_t stage=0);
c57f56b7	122	virtual Bool_t MergeOutputs();
16a4353c	123	virtual void Print(Option_t *option="") const;
5513444a	124	virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
0f389141	125	static Bool_t SetupPar(const char *package);
a03be957	126	virtual Bool_t Submit();
a03be957	127	virtual Bool_t SubmitMerging();
7c2cd90a	128	static Int_t SubmitSingleJob(const char *query);
c57f56b7	129	virtual void WriteAnalysisFile();
c57f56b7	130	virtual void WriteAnalysisMacro();
0f389141	131	virtual void WriteMergingMacro();
0f389141	132	virtual void WriteMergeExecutable();
c57f56b7	133	virtual void WriteExecutable();
5513444a	134	virtual Bool_t WriteJDL(Bool_t copy);
5513444a	135	virtual void WriteProductionFile(const char *filename) const;
0f389141	136	virtual void WriteValidationScript(Bool_t merge=kFALSE);
c57f56b7	137
3bdcb562	138	// PROOF mode
	139	virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;}
	140	virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;}
	141	virtual const char *GetProofDataSet() const {return fProofDataSet.Data();}
28ce6c9c	142	virtual void SetProofParameter(const char pname, const char value);
28ce6c9c	143	const char GetProofParameter(const char pname) const;
3bdcb562	144	virtual void SetProofReset(Int_t mode) {fProofReset = mode;}
3bdcb562	145	virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;}
27734f0e	146	virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;}
3bdcb562	147	virtual void SetRootVersionForProof(const char *version) {fRootVersionForProof = version;}
	148	virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;}
	149	// .txt file containing the list of files to be chained in test mode
	150	virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;}
	151	virtual TChain GetChainForTestMode(const char treeName) const;
	152
c57f56b7	153	protected:
	154	void CdWork();
	155	Bool_t CheckInputData();
	156	void CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags);
	157	virtual Bool_t Connect();
	158	virtual void SetDefaults();
a03be957	159	Bool_t SubmitNext();
c57f56b7	160
c57f56b7	161	Bool_t IsCollection(const char *lfn) const;
fe2d7fc2	162	virtual Bool_t IsSingleOutput() const;
c57f56b7	163	Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
77f34eae	164	Bool_t LoadModule(AliAnalysisTaskCfg *mod);
77f34eae	165	Bool_t CheckDependencies();
b5ae4fe0	166	Bool_t CheckFileCopy(const char *alienpath);
c57f56b7	167
	168	private:
	169	TGridJDL *fGridJDL; //! JDL maker
0f389141	170	TGridJDL *fMergingJDL; //! JDL maker
c57f56b7	171	Int_t fPrice; // Grid price for the job;
	172	Int_t fTTL; // Time to live.
	173	Int_t fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob
	174	Int_t fMaxInitFailed; // Maximum initial consecutive subjobs accepted to fail
	175	Int_t fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio
bb885a9e	176	Int_t fNtestFiles; // Number of files used in the testing case
a8739e8a	177	Int_t fRunRange[2]; // Run range
319593fb	178	Int_t fNrunsPerMaster; // Number of runs per masterjob
16a4353c	179	Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk
b3e07543	180	Int_t fMaxMergeStages; // Maximum number of merging stages
d2a409b2	181	Int_t fNsubmitted; // Number of jobs submitted
a3e84053	182	Int_t fProductionMode; // Production mode (0-off, 1-on)
cd11251e	183	Int_t fOutputToRunNo; // Use run number as output directory
0f389141	184	Int_t fMergeViaJDL; // Enable merging via automatic JDL
	185	Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access
	186	Int_t fOverwriteMode; // Overwrite existing files if any
149d288c	187	Int_t fNreplicas; // Number of replicas for the output files
3bdcb562	188	Int_t fNproofWorkers; // Number of workers in proof mode
27734f0e	189	Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
3bdcb562	190	Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard
c57f56b7	191	TString fRunNumbers; // List of runs to be processed
c57f56b7	192	TString fExecutable; // Executable script for AliEn job
0a1c1f7f	193	TString fExecutableCommand; // Command(s) to be executed in the executable script
c57f56b7	194	TString fArguments; // Arguments for the executable script
631c0b05	195	TString fExecutableArgs; // arguments added to the executable script after the analysis macro
c57f56b7	196	TString fAnalysisMacro; // Root macro steering the analysis
c57f56b7	197	TString fAnalysisSource; // User analysis implementation (.cxx) file(s)
d3b18c4c	198	TString fValidationScript; // Name of the validation script
d5c6455a	199	TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
d5c6455a	200	TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
c57f56b7	201	TString fSplitMode; // Job split mode
	202	TString fAPIVersion; // API version
	203	TString fROOTVersion; // ROOT version
	204	TString fAliROOTVersion; // AliROOT version
648174cf	205	TString fExternalPackages; // External packages
c57f56b7	206	TString fUser; // AliEn user name
	207	TString fGridWorkingDir; // AliEn directory containing the input packages
	208	TString fGridDataDir; // AliEn data production directory
	209	TString fDataPattern; // Data pattern for 'find' command
	210	TString fGridOutputDir; // AliEn directory (wrt work dir) where the output should be written
	211	TString fOutputArchive; // List of output archives separated by blancs
	212	TString fOutputFiles; // List of output files separated by blancs
	213	TString fInputFormat; // Input format (xml-single)
	214	TString fDatasetName; // Dataset xml file to be created
	215	TString fJDLName; // JDL file to be generated
d3b18c4c	216	TString fTerminateFiles; // List of output files produced during Terminate
bb885a9e	217	TString fMergeExcludes; // List of output files excluded from merging
37d21c01	218	TString fRegisterExcludes; // List of liles not to be registered/merged
f965131e	219	TString fIncludePath; // Include path
bb885a9e	220	TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment.
0df6ccf2	221	TString fFriendChainName; // File name to construct friend chain (for AOD)
c6cb3634	222	TString fJobTag; // Job tag
648174cf	223	TString fOutputSingle; // Directory name for the output when split is per file
5fce53f4	224	TString fRunPrefix; // Run prefix to be applied to run numbers
3bdcb562	225	TString fProofCluster; // Proof cluster name
	226	TString fProofDataSet; // Proof dataset to be used
	227	TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
	228	TString fRootVersionForProof; // ROOT version to be used in PROOF mode. The default one taken if empty.
	229	TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster
f47d5cb4	230	TString fMergeDirName; // Name of the directory that should be added to the output directory
c57f56b7	231	TObjArray *fInputFiles; // List of input files to be processed by the job
4e5c5506	232	TObjArray *fPackages; // List of packages to be used
77f34eae	233	TObjArray *fModules; // List of AliAnalysisTaskCfg modules
28ce6c9c	234	TMap fProofParam; // Key-value pairs for proof mode
c57f56b7	235
37d21c01	236	ClassDef(AliAnalysisAlien, 20) // Class providing some AliEn utilities
c57f56b7	237	};
c57f56b7	238	#endif