[u/mrichter/AliRoot.git] / HLT / TPCLib / AliHLTTPCClusterFinderComponent.cxx

// $Id$

/**************************************************************************
 * This file is property of and copyright by the ALICE HLT Project        * 
 * ALICE Experiment at CERN, All rights reserved.                         *
 *                                                                        *
 * Primary Authors: Matthias Richter <Matthias.Richter@ift.uib.no>        *
 *                  Timm Steinbeck <timm@kip.uni-heidelberg.de>           *
 *                  Jochen Thaeder <thaeder@kip.uni-heidelberg.de>        *
 *                  for The ALICE HLT Project.                            *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

/** @file   AliHLTTPCClusterFinderComponent.cxx
    @author Timm Steinbeck, Matthias Richter, Jochen Thaeder, Kenneth Aamodt
    @date   
    @brief  The TPC cluster finder processing component
*/

// see header file for class documentation                                   //
// or                                                                        //
// refer to README to build package                                          //
// or                                                                        //
// visit http://web.ift.uib.no/~kjeks/doc/alice-hlt                          //

#if __GNUC__>= 3
using namespace std;
#endif
#include "AliHLTTPCClusterFinderComponent.h"
#include "AliHLTTPCDigitReaderPacked.h"
#include "AliHLTTPCDigitReaderUnpacked.h"
#include "AliHLTTPCDigitReaderRaw.h"
#include "AliHLTTPCClusterFinder.h"
#include "AliHLTTPCSpacePointData.h"
#include "AliHLTTPCClusterDataFormat.h"
#include "AliHLTTPCTransform.h"
#include "AliHLTTPCClusters.h"
#include "AliHLTTPCDefinitions.h"
#include <cstdlib>
#include <cerrno>
#include "TString.h"
#include <sys/time.h>

// this is a global object used for automatic component registration, do not use this
// use fPackedSwitch = true for packed inputtype "gkDDLPackedRawDataType"
// use fPackedSwitch = false for unpacked inputtype "gkUnpackedRawDataType"
AliHLTTPCClusterFinderComponent gAliHLTTPCClusterFinderComponentPacked(true);
AliHLTTPCClusterFinderComponent gAliHLTTPCClusterFinderComponentUnpacked(false);

ClassImp(AliHLTTPCClusterFinderComponent)

AliHLTTPCClusterFinderComponent::AliHLTTPCClusterFinderComponent(bool packed)
  :
  fClusterFinder(NULL),
  fReader(NULL),
  fClusterDeconv(true),
  fXYClusterError(-1),
  fZClusterError(-1),
  fPackedSwitch(packed),
  fUnsorted(0),
  fPatch(0),
  fPadArray(NULL),
  fGetActivePads(0)
{
  // see header file for class documentation
  // or
  // refer to README to build package
  // or
  // visit http://web.ift.uib.no/~kjeks/doc/alice-hlt
}

AliHLTTPCClusterFinderComponent::~AliHLTTPCClusterFinderComponent()
{
  // see header file for class documentation
}

// Public functions to implement AliHLTComponent's interface.
// These functions are required for the registration process

const char* AliHLTTPCClusterFinderComponent::GetComponentID()
{
  // see header file for class documentation
  if (fPackedSwitch) return "TPCClusterFinderPacked";
  else return "TPCClusterFinderUnpacked";
}

void AliHLTTPCClusterFinderComponent::GetInputDataTypes( vector<AliHLTComponentDataType>& list)
{
  // see header file for class documentation
  list.clear(); 
  if (fPackedSwitch) list.push_back( AliHLTTPCDefinitions::fgkDDLPackedRawDataType );
  else list.push_back( AliHLTTPCDefinitions::fgkUnpackedRawDataType );
   
}

AliHLTComponentDataType AliHLTTPCClusterFinderComponent::GetOutputDataType()
{
  // see header file for class documentation
  return AliHLTTPCDefinitions::fgkClustersDataType;
}

void AliHLTTPCClusterFinderComponent::GetOutputDataSize( unsigned long& constBase, double& inputMultiplier )
{
  // see header file for class documentation
  // XXX TODO: Find more realistic values.  
  constBase = 0;
  if (fPackedSwitch)  inputMultiplier = (6 * 0.4);
  else  inputMultiplier = 0.4;
}

AliHLTComponent* AliHLTTPCClusterFinderComponent::Spawn()
{
  // see header file for class documentation
  return new AliHLTTPCClusterFinderComponent(fPackedSwitch);
}
	
int AliHLTTPCClusterFinderComponent::DoInit( int argc, const char** argv )
{
  // see header file for class documentation
  if ( fClusterFinder )
    return EINPROGRESS;

  fClusterFinder = new AliHLTTPCClusterFinder();

  Int_t rawreadermode =  -1;
  Int_t sigthresh = -1;
  Double_t sigmathresh= -1;
  Float_t occulimit = 1.0;
  Int_t oldRCUFormat=0;
  // Data Format version numbers:
  // 0: RCU Data format as delivered during TPC commissioning, pads/padrows are sorted, RCU trailer is one 32 bit word.
  // 1: As 0, but pads/padrows are delivered "as is", without sorting
  // 2: As 0, but RCU trailer is 3 32 bit words.
  // 3: As 1, but RCU trailer is 3 32 bit words.
  // -1: use offline raw reader

  Int_t i = 0;
  Char_t* cpErr;

  while ( i < argc ) {      

    // -- raw reader mode option
    if ( !strcmp( argv[i], "rawreadermode" ) ) {
      if ( argc <= i+1 ) {
	Logging( kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Missing rawreadermode", "Raw Reader Mode not specified" );
	return ENOTSUP;
      }

      // Decodes the rawreader mode: either number or string and returns the rawreadermode
      // -1 on failure, -2 for offline
      rawreadermode = AliHLTTPCDigitReaderRaw::DecodeMode( argv[i+1] );

      if (rawreadermode == -1 ) {
	Logging( kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Missing rawreadermode", "Cannot convert rawreadermode specifier '%s'.", argv[i+1] );
	return EINVAL;
      }

      i += 2;
      continue;
    }

    // -- pp run option
    if ( !strcmp( argv[i], "pp-run" ) ) {
      fClusterDeconv = false;
      i++;
      continue;
    }

    // -- zero suppression threshold
    if ( !strcmp( argv[i], "adc-threshold" ) ) {
      sigthresh = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ) {
	HLTError("Cannot convert threshold specifier '%s'.", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    // -- pad occupancy limit
    if ( !strcmp( argv[i], "occupancy-limit" ) ) {
      occulimit = strtod( argv[i+1], &cpErr);
      if ( *cpErr ) {
	HLTError("Cannot convert occupancy specifier '%s'.", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    // -- number of timebins (default 1024)
    if ( !strcmp( argv[i], "timebins" ) ) {
      TString parameter(argv[i+1]);
      parameter.Remove(TString::kLeading, ' '); // remove all blanks
      if (parameter.IsDigit()) {
	AliHLTTPCTransform::SetNTimeBins(parameter.Atoi());
	HLTInfo("number of timebins set to %d, zbin=%f", AliHLTTPCTransform::GetNTimeBins(), AliHLTTPCTransform::GetZWidth());
      } else {
	HLTError("Cannot timebin specifier '%s'.", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    // -- checking for rcu format
    if ( !strcmp( argv[i], "oldrcuformat" ) ) {
      oldRCUFormat = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ){
	HLTError("Cannot convert oldrcuformat specifier '%s'. Should  be 0(off) or 1(on), must be integer", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }
      
    // -- checking for unsorted clusterfinding
    if ( !strcmp( argv[i], "unsorted" ) ) {
      fUnsorted = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ){
	HLTError("Cannot convert unsorted specifier '%s'. Should  be 0(off) or 1(on), must be integer", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }
      
    // -- checking for unsorted clusterfinding
    if ( !strcmp( argv[i], "patch" ) ) {
      fPatch = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ){
	HLTError("Cannot convert patch specifier '%s'. Should  be between 0 and 5, must be integer", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    // -- checking for active pads, used in 2007 December run
    if ( !strcmp( argv[i], "activepads" ) ) {
      fGetActivePads = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ){
	HLTError("Cannot convert activepads specifier '%s'. Should  be 0(off) or 1(on), must be integer", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    // -- checking for nsigma-threshold, used in 2007 December run in ZeroSuppression
    if ( !strcmp( argv[i], "nsigma-threshold" ) ) {
       sigmathresh = strtoul( argv[i+1], &cpErr ,0);
      if ( *cpErr ){
	HLTError("Cannot convert nsigma-threshold specifier '%s'. Must be integer", argv[i+1]);
	return EINVAL;
      }
      i+=2;
      continue;
    }

    Logging(kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Unknown Option", "Unknown option '%s'", argv[i] );
    return EINVAL;

  }

  // Choose reader

  if (fPackedSwitch) { 
    if (rawreadermode == -2) {
#if defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
      HLTDebug("using AliHLTTPCDigitReaderPacked");
      fReader = new AliHLTTPCDigitReaderPacked();
      if(oldRCUFormat==1){
	fReader->SetOldRCUFormat(kTRUE);
      }
      else if(oldRCUFormat!=0){
	HLTWarning("Wrong oldrcuformat specifier %d; oldrcuformat set to default(kFALSE)",oldRCUFormat);
      }
      if(fUnsorted){
	fReader->SetUnsorted(kTRUE);
      }
      fClusterFinder->SetReader(fReader);
#else // ! defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
      HLTFatal("DigitReaderPacked not available - check your build");
      return -ENODEV;
#endif //  defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
    } else {
#if defined(HAVE_TPC_MAPPING)
      HLTDebug("using AliHLTTPCDigitReaderRaw mode %d", rawreadermode);
      fReader = new AliHLTTPCDigitReaderRaw(rawreadermode);
      fClusterFinder->SetReader(fReader);
#else //! defined(HAVE_TPC_MAPPING)
      HLTFatal("DigitReaderRaw not available - check your build");
      return -ENODEV;
#endif //defined(HAVE_TPC_MAPPING)
    }
  }
  else {
    HLTDebug("using AliHLTTPCDigitReaderUnpacked");
    fReader = new AliHLTTPCDigitReaderUnpacked();
    fClusterFinder->SetReader(fReader);
  }

  // if pp-run use occupancy limit else set to 1. ==> use all 
  if ( !fClusterDeconv )
    fClusterFinder->SetOccupancyLimit(occulimit);
  else 
    fClusterFinder->SetOccupancyLimit(1.0);
      
  // Variables to setup the Clusterfinder
  // TODO: this sounds strange and has to be verified; is the cluster finder not working when
  // fClusterDeconv = false ?
  fClusterDeconv = true;
  fXYClusterError = -1;
  fZClusterError = -1;

 
  fClusterFinder->SetDeconv( fClusterDeconv );
  fClusterFinder->SetXYError( fXYClusterError );
  fClusterFinder->SetZError( fZClusterError );
  if ( (fXYClusterError>0) && (fZClusterError>0) )
    fClusterFinder->SetCalcErr( false );
  fClusterFinder->SetSignalThreshold(sigthresh);
  fClusterFinder->SetNSigmaThreshold(sigmathresh);
  if(fUnsorted&&fPatch>-1&&fPatch<6){
    fPadArray = new AliHLTTPCPadArray(fPatch);
    fPadArray->InitializeVector();
  }

  return 0;
}

int AliHLTTPCClusterFinderComponent::DoDeinit()
{
  // see header file for class documentation

  if ( fClusterFinder )
    delete fClusterFinder;
  fClusterFinder = NULL;
 
  if ( fReader )
    delete fReader;
  fReader = NULL;
    
  return 0;
}

int AliHLTTPCClusterFinderComponent::DoEvent( const AliHLTComponentEventData& evtData, 
					      const AliHLTComponentBlockData* blocks, 
					      AliHLTComponentTriggerData& /*trigData*/, AliHLTUInt8_t* outputPtr, 
					      AliHLTUInt32_t& size, 
					      vector<AliHLTComponentBlockData>& outputBlocks )
{
  // see header file for class documentation

  //  == init iter (pointer to datablock)
  const AliHLTComponentBlockData* iter = NULL;
  unsigned long ndx;

  //  == OUTdatatype pointer
  AliHLTTPCClusterData* outPtr;

  AliHLTUInt8_t* outBPtr;
  UInt_t offset, mysize, nSize, tSize = 0;

  outBPtr = outputPtr;
  outPtr = (AliHLTTPCClusterData*)outBPtr;

  Int_t slice, patch, row[2];
  unsigned long maxPoints, realPoints = 0;

  for ( ndx = 0; ndx < evtData.fBlockCnt; ndx++ )
    {
      iter = blocks+ndx;
      mysize = 0;
      offset = tSize;


      if (fPackedSwitch) {	
	char tmp1[14], tmp2[14];
	DataType2Text( iter->fDataType, tmp1 );
	DataType2Text( AliHLTTPCDefinitions::fgkDDLPackedRawDataType, tmp2 );
	Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Event received", 
		 "Event 0x%08LX (%Lu) received datatype: %s - required datatype: %s",
		 evtData.fEventID, evtData.fEventID, tmp1, tmp2 );

	if ( iter->fDataType != AliHLTTPCDefinitions::fgkDDLPackedRawDataType ) continue;

      }
      else {
	char tmp1[14], tmp2[14];
	DataType2Text( iter->fDataType, tmp1 );
	DataType2Text( AliHLTTPCDefinitions::fgkUnpackedRawDataType, tmp2 );
	Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Event received", 
		 "Event 0x%08LX (%Lu) received datatype: %s - required datatype: %s",
		 evtData.fEventID, evtData.fEventID, tmp1, tmp2 );

	if ( iter->fDataType != AliHLTTPCDefinitions::fgkUnpackedRawDataType ) continue;

      }
    	
      slice = AliHLTTPCDefinitions::GetMinSliceNr( *iter );
      patch = AliHLTTPCDefinitions::GetMinPatchNr( *iter );
      row[0] = AliHLTTPCTransform::GetFirstRow( patch );
      row[1] = AliHLTTPCTransform::GetLastRow( patch );
	
      outPtr = (AliHLTTPCClusterData*)outBPtr;

#ifndef KENNETH
      maxPoints = (size-tSize-sizeof(AliHLTTPCClusterData))/sizeof(AliHLTTPCSpacePointData);
#else
      maxPoints = (size-tSize-sizeof(AliHLTTPCClusters))/sizeof(AliHLTTPCSpacePointData);
#endif 

      fClusterFinder->InitSlice( slice, patch, row[0], row[1], maxPoints );
      fClusterFinder->SetOutputArray( (AliHLTTPCSpacePointData*)outPtr->fSpacePoints );
	
      if(fUnsorted){


	fClusterFinder->SetPadArray(fPadArray);
	  
	double totalT=0;
	struct timeval startT, endT;
	gettimeofday( &startT, NULL );

	fClusterFinder->ReadDataUnsorted(iter->fPtr, iter->fSize );

	gettimeofday( &endT, NULL );
	unsigned long long dt;
	dt = endT.tv_sec-startT.tv_sec;
	dt *= 1000000ULL;
	dt += endT.tv_usec-startT.tv_usec;
	double dtd = ((double)dt);
	totalT += dtd;
	//	  dtd = dtd / (double)eventIterations;
	//	  if ( iterations<=1 )
	cout<<endl;
	printf( "Time needed to read data: %f microsec. / %f millisec. / %f s\n", 
		dtd, dtd/1000.0, dtd/1000000.0 );
	  
	cout<<endl;
	fClusterFinder->FindClusters();
      }
      else{
	fClusterFinder->Read(iter->fPtr, iter->fSize );
	fClusterFinder->ProcessDigits();
      }
      realPoints = fClusterFinder->GetNumberOfClusters();
	
      outPtr->fSpacePointCnt = realPoints;
      nSize = sizeof(AliHLTTPCSpacePointData)*realPoints;
#ifndef KENNETH
      mysize += nSize+sizeof(AliHLTTPCClusterData);
#else
      mysize += nSize+sizeof(AliHLTTPCClusters);
#endif 

      Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Spacepoints", 
	       "Number of spacepoints: %lu Slice/Patch/RowMin/RowMax: %d/%d/%d/%d.",
	       realPoints, slice, patch, row[0], row[1] );
      AliHLTComponentBlockData bd;
      FillBlockData( bd );
      bd.fOffset = offset;
      bd.fSize = mysize;
      bd.fSpecification = iter->fSpecification;
      //AliHLTSubEventDescriptor::FillBlockAttributes( bd.fAttributes );
      outputBlocks.push_back( bd );
	
      tSize += mysize;
      outBPtr += mysize;
      outPtr = (AliHLTTPCClusterData*)outBPtr;
	
      if(fGetActivePads){
	AliHLTTPCPadArray::AliHLTTPCActivePads* outPtrActive;
	UInt_t activePadsSize, activePadsN = 0;
 	outPtrActive = (AliHLTTPCPadArray::AliHLTTPCActivePads*)outBPtr;
 	offset=tSize;
 	Int_t maxActivePads = (size-tSize)/sizeof(AliHLTTPCPadArray::AliHLTTPCActivePads);
 	activePadsSize= fClusterFinder->GetActivePads((AliHLTTPCPadArray::AliHLTTPCActivePads*)outPtrActive,maxActivePads)*sizeof(AliHLTTPCPadArray::AliHLTTPCActivePads);
 	
 	AliHLTComponentBlockData bdActive;
 	FillBlockData( bdActive );
 	bdActive.fOffset = offset;
 	bdActive.fSize = activePadsSize;
 	bdActive.fSpecification = iter->fSpecification;
 	bdActive.fDataType = AliHLTTPCDefinitions::fgkActivePadsDataType;
 	outputBlocks.push_back( bdActive );
 	
 	tSize+=activePadsSize;
 	outBPtr += activePadsSize;
 	outPtrActive = (AliHLTTPCPadArray::AliHLTTPCActivePads*)outBPtr;
      }
 

      if ( tSize > size )
	{
	  Logging( kHLTLogFatal, "HLT::TPCClusterFinder::DoEvent", "Too much data", 
		   "Data written over allowed buffer. Amount written: %lu, allowed amount: %lu.",
		   tSize, size );
	  return EMSGSIZE;
	}
    }
    
  size = tSize;

  return 0;
}
Commit	Line	Data
71d7c760	1	// $Id$
	2
	3	/**************************************************************************
9be2600f	4	* This file is property of and copyright by the ALICE HLT Project *
9be2600f	5	* ALICE Experiment at CERN, All rights reserved. *
71d7c760	6	* *
9be2600f	7	* Primary Authors: Matthias Richter <Matthias.Richter@ift.uib.no> *
	8	* Timm Steinbeck <timm@kip.uni-heidelberg.de> *
	9	* Jochen Thaeder <thaeder@kip.uni-heidelberg.de> *
	10	* for The ALICE HLT Project. *
71d7c760	11	* *
	12	* Permission to use, copy, modify and distribute this software and its *
	13	* documentation strictly for non-commercial purposes is hereby granted *
	14	* without fee, provided that the above copyright notice appears in all *
	15	* copies and that both the copyright notice and this permission notice *
	16	* appear in the supporting documentation. The authors make no claims *
	17	* about the suitability of this software for any purpose. It is *
	18	* provided "as is" without express or implied warranty. *
	19	**************************************************************************/
	20
96bda103	21	/** @file AliHLTTPCClusterFinderComponent.cxx
27f5f8ed	22	@author Timm Steinbeck, Matthias Richter, Jochen Thaeder, Kenneth Aamodt
de554e07	23	@date
	24	@brief The TPC cluster finder processing component
	25	*/
a38a7850	26
e67b0680	27	// see header file for class documentation //
	28	// or //
	29	// refer to README to build package //
	30	// or //
	31	// visit http://web.ift.uib.no/~kjeks/doc/alice-hlt //
	32
db16520a	33	#if __GNUC__>= 3
71d7c760	34	using namespace std;
71d7c760	35	#endif
71d7c760	36	#include "AliHLTTPCClusterFinderComponent.h"
a38a7850	37	#include "AliHLTTPCDigitReaderPacked.h"
a38a7850	38	#include "AliHLTTPCDigitReaderUnpacked.h"
db16520a	39	#include "AliHLTTPCDigitReaderRaw.h"
a38a7850	40	#include "AliHLTTPCClusterFinder.h"
a6c02c85	41	#include "AliHLTTPCSpacePointData.h"
71d7c760	42	#include "AliHLTTPCClusterDataFormat.h"
a6c02c85	43	#include "AliHLTTPCTransform.h"
01f43166	44	#include "AliHLTTPCClusters.h"
e67b0680	45	#include "AliHLTTPCDefinitions.h"
	46	#include <cstdlib>
	47	#include <cerrno>
ecefc48a	48	#include "TString.h"
01f43166	49	#include <sys/time.h>
71d7c760	50
71d7c760	51	// this is a global object used for automatic component registration, do not use this
2a083ac4	52	// use fPackedSwitch = true for packed inputtype "gkDDLPackedRawDataType"
2a083ac4	53	// use fPackedSwitch = false for unpacked inputtype "gkUnpackedRawDataType"
a38a7850	54	AliHLTTPCClusterFinderComponent gAliHLTTPCClusterFinderComponentPacked(true);
a38a7850	55	AliHLTTPCClusterFinderComponent gAliHLTTPCClusterFinderComponentUnpacked(false);
71d7c760	56
	57	ClassImp(AliHLTTPCClusterFinderComponent)
	58
a38a7850	59	AliHLTTPCClusterFinderComponent::AliHLTTPCClusterFinderComponent(bool packed)
74c73e5a	60	:
74c73e5a	61	fClusterFinder(NULL),
	62	fReader(NULL),
	63	fClusterDeconv(true),
	64	fXYClusterError(-1),
2a083ac4	65	fZClusterError(-1),
01f43166	66	fPackedSwitch(packed),
01f43166	67	fUnsorted(0),
a1dbf058	68	fPatch(0),
b1c46961	69	fPadArray(NULL),
b1c46961	70	fGetActivePads(0)
74c73e5a	71	{
2a083ac4	72	// see header file for class documentation
	73	// or
	74	// refer to README to build package
	75	// or
	76	// visit http://web.ift.uib.no/~kjeks/doc/alice-hlt
74c73e5a	77	}
74c73e5a	78
71d7c760	79	AliHLTTPCClusterFinderComponent::~AliHLTTPCClusterFinderComponent()
7e99beb3	80	{
2a083ac4	81	// see header file for class documentation
7e99beb3	82	}
71d7c760	83
	84	// Public functions to implement AliHLTComponent's interface.
	85	// These functions are required for the registration process
	86
	87	const char* AliHLTTPCClusterFinderComponent::GetComponentID()
7e99beb3	88	{
2a083ac4	89	// see header file for class documentation
7e99beb3	90	if (fPackedSwitch) return "TPCClusterFinderPacked";
	91	else return "TPCClusterFinderUnpacked";
	92	}
71d7c760	93
8ede8717	94	void AliHLTTPCClusterFinderComponent::GetInputDataTypes( vector<AliHLTComponentDataType>& list)
7e99beb3	95	{
2a083ac4	96	// see header file for class documentation
7e99beb3	97	list.clear();
	98	if (fPackedSwitch) list.push_back( AliHLTTPCDefinitions::fgkDDLPackedRawDataType );
	99	else list.push_back( AliHLTTPCDefinitions::fgkUnpackedRawDataType );
a38a7850	100
7e99beb3	101	}
71d7c760	102
8ede8717	103	AliHLTComponentDataType AliHLTTPCClusterFinderComponent::GetOutputDataType()
7e99beb3	104	{
2a083ac4	105	// see header file for class documentation
7e99beb3	106	return AliHLTTPCDefinitions::fgkClustersDataType;
7e99beb3	107	}
71d7c760	108
71d7c760	109	void AliHLTTPCClusterFinderComponent::GetOutputDataSize( unsigned long& constBase, double& inputMultiplier )
7e99beb3	110	{
2a083ac4	111	// see header file for class documentation
7e99beb3	112	// XXX TODO: Find more realistic values.
	113	constBase = 0;
	114	if (fPackedSwitch) inputMultiplier = (6 * 0.4);
	115	else inputMultiplier = 0.4;
	116	}
71d7c760	117
71d7c760	118	AliHLTComponent* AliHLTTPCClusterFinderComponent::Spawn()
7e99beb3	119	{
2a083ac4	120	// see header file for class documentation
7e99beb3	121	return new AliHLTTPCClusterFinderComponent(fPackedSwitch);
7e99beb3	122	}
71d7c760	123
71d7c760	124	int AliHLTTPCClusterFinderComponent::DoInit( int argc, const char** argv )
7e99beb3	125	{
2a083ac4	126	// see header file for class documentation
7e99beb3	127	if ( fClusterFinder )
	128	return EINPROGRESS;
	129
	130	fClusterFinder = new AliHLTTPCClusterFinder();
	131
	132	Int_t rawreadermode = -1;
	133	Int_t sigthresh = -1;
b1c46961	134	Double_t sigmathresh= -1;
7e99beb3	135	Float_t occulimit = 1.0;
	136	Int_t oldRCUFormat=0;
	137	// Data Format version numbers:
	138	// 0: RCU Data format as delivered during TPC commissioning, pads/padrows are sorted, RCU trailer is one 32 bit word.
	139	// 1: As 0, but pads/padrows are delivered "as is", without sorting
	140	// 2: As 0, but RCU trailer is 3 32 bit words.
	141	// 3: As 1, but RCU trailer is 3 32 bit words.
	142	// -1: use offline raw reader
	143
	144	Int_t i = 0;
	145	Char_t* cpErr;
	146
	147	while ( i < argc ) {
	148
	149	// -- raw reader mode option
	150	if ( !strcmp( argv[i], "rawreadermode" ) ) {
	151	if ( argc <= i+1 ) {
	152	Logging( kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Missing rawreadermode", "Raw Reader Mode not specified" );
	153	return ENOTSUP;
	154	}
f3f599e0	155
7e99beb3	156	// Decodes the rawreader mode: either number or string and returns the rawreadermode
	157	// -1 on failure, -2 for offline
	158	rawreadermode = AliHLTTPCDigitReaderRaw::DecodeMode( argv[i+1] );
f3f599e0	159
7e99beb3	160	if (rawreadermode == -1 ) {
	161	Logging( kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Missing rawreadermode", "Cannot convert rawreadermode specifier '%s'.", argv[i+1] );
	162	return EINVAL;
db16520a	163	}
db16520a	164
7e99beb3	165	i += 2;
	166	continue;
	167	}
db16520a	168
7e99beb3	169	// -- pp run option
	170	if ( !strcmp( argv[i], "pp-run" ) ) {
	171	fClusterDeconv = false;
	172	i++;
	173	continue;
	174	}
	175
	176	// -- zero suppression threshold
	177	if ( !strcmp( argv[i], "adc-threshold" ) ) {
	178	sigthresh = strtoul( argv[i+1], &cpErr ,0);
	179	if ( *cpErr ) {
	180	HLTError("Cannot convert threshold specifier '%s'.", argv[i+1]);
	181	return EINVAL;
84645eb0	182	}
7e99beb3	183	i+=2;
	184	continue;
	185	}
84645eb0	186
7e99beb3	187	// -- pad occupancy limit
7e99beb3	188	if ( !strcmp( argv[i], "occupancy-limit" ) ) {
d0173e83	189	occulimit = strtod( argv[i+1], &cpErr);
7e99beb3	190	if ( *cpErr ) {
	191	HLTError("Cannot convert occupancy specifier '%s'.", argv[i+1]);
	192	return EINVAL;
5235c3e9	193	}
7e99beb3	194	i+=2;
	195	continue;
	196	}
5235c3e9	197
7e99beb3	198	// -- number of timebins (default 1024)
	199	if ( !strcmp( argv[i], "timebins" ) ) {
	200	TString parameter(argv[i+1]);
	201	parameter.Remove(TString::kLeading, ' '); // remove all blanks
	202	if (parameter.IsDigit()) {
	203	AliHLTTPCTransform::SetNTimeBins(parameter.Atoi());
74511e22	204	HLTInfo("number of timebins set to %d, zbin=%f", AliHLTTPCTransform::GetNTimeBins(), AliHLTTPCTransform::GetZWidth());
7e99beb3	205	} else {
	206	HLTError("Cannot timebin specifier '%s'.", argv[i+1]);
	207	return EINVAL;
ecefc48a	208	}
7e99beb3	209	i+=2;
	210	continue;
	211	}
ecefc48a	212
7e99beb3	213	// -- checking for rcu format
	214	if ( !strcmp( argv[i], "oldrcuformat" ) ) {
	215	oldRCUFormat = strtoul( argv[i+1], &cpErr ,0);
	216	if ( *cpErr ){
	217	HLTError("Cannot convert oldrcuformat specifier '%s'. Should be 0(off) or 1(on), must be integer", argv[i+1]);
	218	return EINVAL;
27f5f8ed	219	}
7e99beb3	220	i+=2;
	221	continue;
	222	}
27f5f8ed	223
01f43166	224	// -- checking for unsorted clusterfinding
	225	if ( !strcmp( argv[i], "unsorted" ) ) {
	226	fUnsorted = strtoul( argv[i+1], &cpErr ,0);
	227	if ( *cpErr ){
	228	HLTError("Cannot convert unsorted specifier '%s'. Should be 0(off) or 1(on), must be integer", argv[i+1]);
	229	return EINVAL;
	230	}
	231	i+=2;
	232	continue;
	233	}
	234
	235	// -- checking for unsorted clusterfinding
	236	if ( !strcmp( argv[i], "patch" ) ) {
	237	fPatch = strtoul( argv[i+1], &cpErr ,0);
	238	if ( *cpErr ){
	239	HLTError("Cannot convert patch specifier '%s'. Should be between 0 and 5, must be integer", argv[i+1]);
	240	return EINVAL;
	241	}
	242	i+=2;
	243	continue;
	244	}
	245
b1c46961	246	// -- checking for active pads, used in 2007 December run
	247	if ( !strcmp( argv[i], "activepads" ) ) {
	248	fGetActivePads = strtoul( argv[i+1], &cpErr ,0);
	249	if ( *cpErr ){
	250	HLTError("Cannot convert activepads specifier '%s'. Should be 0(off) or 1(on), must be integer", argv[i+1]);
	251	return EINVAL;
	252	}
	253	i+=2;
	254	continue;
	255	}
	256
	257	// -- checking for nsigma-threshold, used in 2007 December run in ZeroSuppression
	258	if ( !strcmp( argv[i], "nsigma-threshold" ) ) {
	259	sigmathresh = strtoul( argv[i+1], &cpErr ,0);
	260	if ( *cpErr ){
	261	HLTError("Cannot convert nsigma-threshold specifier '%s'. Must be integer", argv[i+1]);
	262	return EINVAL;
	263	}
	264	i+=2;
	265	continue;
	266	}
	267
7e99beb3	268	Logging(kHLTLogError, "HLT::TPCClusterFinder::DoInit", "Unknown Option", "Unknown option '%s'", argv[i] );
7e99beb3	269	return EINVAL;
27f5f8ed	270
7e99beb3	271	}
db16520a	272
7e99beb3	273	// Choose reader
db16520a	274
7e99beb3	275	if (fPackedSwitch) {
7e99beb3	276	if (rawreadermode == -2) {
74c73e5a	277	#if defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
f44e97dc	278	HLTDebug("using AliHLTTPCDigitReaderPacked");
7e99beb3	279	fReader = new AliHLTTPCDigitReaderPacked();
	280	if(oldRCUFormat==1){
	281	fReader->SetOldRCUFormat(kTRUE);
	282	}
	283	else if(oldRCUFormat!=0){
	284	HLTWarning("Wrong oldrcuformat specifier %d; oldrcuformat set to default(kFALSE)",oldRCUFormat);
	285	}
01f43166	286	if(fUnsorted){
	287	fReader->SetUnsorted(kTRUE);
	288	}
7e99beb3	289	fClusterFinder->SetReader(fReader);
74c73e5a	290	#else // ! defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
7e99beb3	291	HLTFatal("DigitReaderPacked not available - check your build");
7e99beb3	292	return -ENODEV;
74c73e5a	293	#endif // defined(HAVE_ALIRAWDATA) && defined(HAVE_ALITPCRAWSTREAM_H)
7e99beb3	294	} else {
db16520a	295	#if defined(HAVE_TPC_MAPPING)
f44e97dc	296	HLTDebug("using AliHLTTPCDigitReaderRaw mode %d", rawreadermode);
7e99beb3	297	fReader = new AliHLTTPCDigitReaderRaw(rawreadermode);
7e99beb3	298	fClusterFinder->SetReader(fReader);
db16520a	299	#else //! defined(HAVE_TPC_MAPPING)
	300	HLTFatal("DigitReaderRaw not available - check your build");
	301	return -ENODEV;
	302	#endif //defined(HAVE_TPC_MAPPING)
a38a7850	303	}
7e99beb3	304	}
7e99beb3	305	else {
f44e97dc	306	HLTDebug("using AliHLTTPCDigitReaderUnpacked");
7e99beb3	307	fReader = new AliHLTTPCDigitReaderUnpacked();
	308	fClusterFinder->SetReader(fReader);
	309	}
	310
	311	// if pp-run use occupancy limit else set to 1. ==> use all
	312	if ( !fClusterDeconv )
	313	fClusterFinder->SetOccupancyLimit(occulimit);
	314	else
	315	fClusterFinder->SetOccupancyLimit(1.0);
db16520a	316
7e99beb3	317	// Variables to setup the Clusterfinder
	318	// TODO: this sounds strange and has to be verified; is the cluster finder not working when
	319	// fClusterDeconv = false ?
	320	fClusterDeconv = true;
	321	fXYClusterError = -1;
	322	fZClusterError = -1;
a38a7850	323
db16520a	324
7e99beb3	325	fClusterFinder->SetDeconv( fClusterDeconv );
	326	fClusterFinder->SetXYError( fXYClusterError );
	327	fClusterFinder->SetZError( fZClusterError );
	328	if ( (fXYClusterError>0) && (fZClusterError>0) )
	329	fClusterFinder->SetCalcErr( false );
	330	fClusterFinder->SetSignalThreshold(sigthresh);
b1c46961	331	fClusterFinder->SetNSigmaThreshold(sigmathresh);
01f43166	332	if(fUnsorted&&fPatch>-1&&fPatch<6){
	333	fPadArray = new AliHLTTPCPadArray(fPatch);
	334	fPadArray->InitializeVector();
	335	}
	336
7e99beb3	337	return 0;
7e99beb3	338	}
71d7c760	339
71d7c760	340	int AliHLTTPCClusterFinderComponent::DoDeinit()
7e99beb3	341	{
2a083ac4	342	// see header file for class documentation
a38a7850	343
7e99beb3	344	if ( fClusterFinder )
	345	delete fClusterFinder;
	346	fClusterFinder = NULL;
a38a7850	347
7e99beb3	348	if ( fReader )
	349	delete fReader;
	350	fReader = NULL;
a38a7850	351
7e99beb3	352	return 0;
7e99beb3	353	}
71d7c760	354
8ede8717	355	int AliHLTTPCClusterFinderComponent::DoEvent( const AliHLTComponentEventData& evtData,
8ede8717	356	const AliHLTComponentBlockData* blocks,
5d2abf3b	357	AliHLTComponentTriggerData& /trigData/, AliHLTUInt8_t* outputPtr,
a38a7850	358	AliHLTUInt32_t& size,
8ede8717	359	vector<AliHLTComponentBlockData>& outputBlocks )
7e99beb3	360	{
2a083ac4	361	// see header file for class documentation
db16520a	362
7e99beb3	363	// == init iter (pointer to datablock)
	364	const AliHLTComponentBlockData* iter = NULL;
	365	unsigned long ndx;
a38a7850	366
7e99beb3	367	// == OUTdatatype pointer
7e99beb3	368	AliHLTTPCClusterData* outPtr;
a38a7850	369
7e99beb3	370	AliHLTUInt8_t* outBPtr;
7e99beb3	371	UInt_t offset, mysize, nSize, tSize = 0;
a38a7850	372
7e99beb3	373	outBPtr = outputPtr;
7e99beb3	374	outPtr = (AliHLTTPCClusterData*)outBPtr;
a38a7850	375
7e99beb3	376	Int_t slice, patch, row[2];
7e99beb3	377	unsigned long maxPoints, realPoints = 0;
a38a7850	378
7e99beb3	379	for ( ndx = 0; ndx < evtData.fBlockCnt; ndx++ )
	380	{
	381	iter = blocks+ndx;
	382	mysize = 0;
	383	offset = tSize;
a38a7850	384
a38a7850	385
7e99beb3	386	if (fPackedSwitch) {
	387	char tmp1[14], tmp2[14];
	388	DataType2Text( iter->fDataType, tmp1 );
	389	DataType2Text( AliHLTTPCDefinitions::fgkDDLPackedRawDataType, tmp2 );
	390	Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Event received",
	391	"Event 0x%08LX (%Lu) received datatype: %s - required datatype: %s",
	392	evtData.fEventID, evtData.fEventID, tmp1, tmp2 );
a38a7850	393
7e99beb3	394	if ( iter->fDataType != AliHLTTPCDefinitions::fgkDDLPackedRawDataType ) continue;
a38a7850	395
7e99beb3	396	}
	397	else {
	398	char tmp1[14], tmp2[14];
	399	DataType2Text( iter->fDataType, tmp1 );
	400	DataType2Text( AliHLTTPCDefinitions::fgkUnpackedRawDataType, tmp2 );
	401	Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Event received",
	402	"Event 0x%08LX (%Lu) received datatype: %s - required datatype: %s",
	403	evtData.fEventID, evtData.fEventID, tmp1, tmp2 );
a38a7850	404
7e99beb3	405	if ( iter->fDataType != AliHLTTPCDefinitions::fgkUnpackedRawDataType ) continue;
a38a7850	406
7e99beb3	407	}
a38a7850	408
7e99beb3	409	slice = AliHLTTPCDefinitions::GetMinSliceNr( *iter );
	410	patch = AliHLTTPCDefinitions::GetMinPatchNr( *iter );
	411	row[0] = AliHLTTPCTransform::GetFirstRow( patch );
	412	row[1] = AliHLTTPCTransform::GetLastRow( patch );
71d7c760	413
7e99beb3	414	outPtr = (AliHLTTPCClusterData*)outBPtr;
a38a7850	415
01f43166	416	#ifndef KENNETH
7e99beb3	417	maxPoints = (size-tSize-sizeof(AliHLTTPCClusterData))/sizeof(AliHLTTPCSpacePointData);
01f43166	418	#else
	419	maxPoints = (size-tSize-sizeof(AliHLTTPCClusters))/sizeof(AliHLTTPCSpacePointData);
	420	#endif
db16520a	421
7e99beb3	422	fClusterFinder->InitSlice( slice, patch, row[0], row[1], maxPoints );
e83e889b	423	fClusterFinder->SetOutputArray( (AliHLTTPCSpacePointData*)outPtr->fSpacePoints );
01f43166	424
	425	if(fUnsorted){
	426
	427
	428	fClusterFinder->SetPadArray(fPadArray);
	429
	430	double totalT=0;
	431	struct timeval startT, endT;
	432	gettimeofday( &startT, NULL );
	433
	434	fClusterFinder->ReadDataUnsorted(iter->fPtr, iter->fSize );
	435
	436	gettimeofday( &endT, NULL );
	437	unsigned long long dt;
	438	dt = endT.tv_sec-startT.tv_sec;
	439	dt *= 1000000ULL;
	440	dt += endT.tv_usec-startT.tv_usec;
	441	double dtd = ((double)dt);
	442	totalT += dtd;
	443	// dtd = dtd / (double)eventIterations;
	444	// if ( iterations<=1 )
	445	cout<<endl;
	446	printf( "Time needed to read data: %f microsec. / %f millisec. / %f s\n",
	447	dtd, dtd/1000.0, dtd/1000000.0 );
	448
	449	cout<<endl;
	450	fClusterFinder->FindClusters();
	451	}
	452	else{
	453	fClusterFinder->Read(iter->fPtr, iter->fSize );
	454	fClusterFinder->ProcessDigits();
	455	}
7e99beb3	456	realPoints = fClusterFinder->GetNumberOfClusters();
71d7c760	457
7e99beb3	458	outPtr->fSpacePointCnt = realPoints;
7e99beb3	459	nSize = sizeof(AliHLTTPCSpacePointData)*realPoints;
01f43166	460	#ifndef KENNETH
7e99beb3	461	mysize += nSize+sizeof(AliHLTTPCClusterData);
01f43166	462	#else
	463	mysize += nSize+sizeof(AliHLTTPCClusters);
	464	#endif
74511e22	465
74511e22	466	Logging( kHLTLogDebug, "HLT::TPCClusterFinder::DoEvent", "Spacepoints",
7e99beb3	467	"Number of spacepoints: %lu Slice/Patch/RowMin/RowMax: %d/%d/%d/%d.",
	468	realPoints, slice, patch, row[0], row[1] );
	469	AliHLTComponentBlockData bd;
	470	FillBlockData( bd );
	471	bd.fOffset = offset;
	472	bd.fSize = mysize;
	473	bd.fSpecification = iter->fSpecification;
	474	//AliHLTSubEventDescriptor::FillBlockAttributes( bd.fAttributes );
	475	outputBlocks.push_back( bd );
71d7c760	476
7e99beb3	477	tSize += mysize;
	478	outBPtr += mysize;
	479	outPtr = (AliHLTTPCClusterData*)outBPtr;
71d7c760	480
b1c46961	481	if(fGetActivePads){
	482	AliHLTTPCPadArray::AliHLTTPCActivePads* outPtrActive;
	483	UInt_t activePadsSize, activePadsN = 0;
	484	outPtrActive = (AliHLTTPCPadArray::AliHLTTPCActivePads*)outBPtr;
	485	offset=tSize;
	486	Int_t maxActivePads = (size-tSize)/sizeof(AliHLTTPCPadArray::AliHLTTPCActivePads);
	487	activePadsSize= fClusterFinder->GetActivePads((AliHLTTPCPadArray::AliHLTTPCActivePads)outPtrActive,maxActivePads)sizeof(AliHLTTPCPadArray::AliHLTTPCActivePads);
	488
	489	AliHLTComponentBlockData bdActive;
	490	FillBlockData( bdActive );
	491	bdActive.fOffset = offset;
	492	bdActive.fSize = activePadsSize;
	493	bdActive.fSpecification = iter->fSpecification;
	494	bdActive.fDataType = AliHLTTPCDefinitions::fgkActivePadsDataType;
	495	outputBlocks.push_back( bdActive );
	496
	497	tSize+=activePadsSize;
	498	outBPtr += activePadsSize;
	499	outPtrActive = (AliHLTTPCPadArray::AliHLTTPCActivePads*)outBPtr;
	500	}
	501
	502
7e99beb3	503	if ( tSize > size )
	504	{
	505	Logging( kHLTLogFatal, "HLT::TPCClusterFinder::DoEvent", "Too much data",
	506	"Data written over allowed buffer. Amount written: %lu, allowed amount: %lu.",
	507	tSize, size );
	508	return EMSGSIZE;
71d7c760	509	}
71d7c760	510	}
7e99beb3	511
7e99beb3	512	size = tSize;
71d7c760	513
7e99beb3	514	return 0;
7e99beb3	515	}