[u/mrichter/AliRoot.git] / PWGHF / vertexingHF / RunAnalysisAODVertexingHF.C

class AliAnalysisGrid;
class AliAnalysisAlien;

void RunAnalysisAODVertexingHF()
{
  //
  // Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
  // It has the structure of a Analysis Train:
  // - in this macro, change things related to running mode
  //   and input preparation 
  // - add your task using a AddTaskXXX macro 
  //
  // A.Dainese, andrea.dainese@lnl.infn.it
  // "grid" mode added by R.Bala, bala@to.infn.it
  //


  gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS  -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g"); 
  //
  TString trainName = "D2H";
  TString analysisMode = "grid"; // "local", "grid", or "proof"
  TString inputMode    = "list"; // "list", "xml", or "dataset"
  Long64_t nentries=123567890,firstentry=0;
  Bool_t useParFiles=kFALSE;
  Bool_t useAlienPlugin=kTRUE;
  TString pluginmode="full";
  Bool_t saveProofToAlien=kFALSE;
  TString proofOutdir = "";
  TString loadMacroPath="$ALICE_ROOT/PWGHF/vertexingHF/macros/";
  //TString loadMacroPath="./"; // this is normally needed for CAF
  //

  if(analysisMode=="grid") {
    // Connect to AliEn
    TGrid::Connect("alien://");
  } else if(analysisMode=="proof") {
    // Connect to the PROOF cluster
    if(inputMode!="dataset") {printf("Input mode must be dataset, for proof analysis\n"); return;}
    gEnv->SetValue("XSec.GSI.DelegProxy","2");
    TProof::Open("alicecaf");
    //TProof::Reset("alicecaf");
    if(saveProofToAlien) {
      TGrid::Connect("alien://");
      if(gGrid) {
	TString homedir = gGrid->GetHomeDirectory();
	TString workdir = homedir + trainName;
	if(!gGrid->Cd(workdir)) {
	  gGrid->Cd(homedir);
	  if(gGrid->Mkdir(workdir)) {
	    gGrid->Cd(trainName);
	    ::Info("VertexingTrain::Connect()", "Directory %s created", gGrid->Pwd());
	  }
	}	   
	gGrid->Mkdir("proof_output");
	gGrid->Cd("proof_output");
	proofOutdir = Form("alien://%s", gGrid->Pwd());
      } 
    }
  }


  // AliRoot libraries
  if(analysisMode=="local" || analysisMode=="grid") {
    TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(loadLibraries.Data());
    LoadLibraries(useParFiles);
  } else if (analysisMode=="proof") {
    gSystem->Load("libTree.so");
    gSystem->Load("libGeom.so");
    gSystem->Load("libPhysics.so");
    gSystem->Load("libVMC.so");    
    gSystem->Load("libMinuit.so");    
    // Enable the needed packages
    //gProof->ClearPackages();
    TString parDir="/afs/cern.ch/user/d/dainesea/code/";
    TString parFile;
    if(!useParFiles) {
      gProof->UploadPackage("AF-v4-17");
      gProof->EnablePackage("AF-v4-17");
      // --- Enable the PWGHFvertexingHF Package
      parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFvertexingHF");
    } else {
      // --- Enable the STEERBase Package
      parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("STEERBase");
      // --- Enable the ESD Package
      parFile="ESD.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ESD");
      // --- Enable the AOD Package
      parFile="AOD.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("AOD");
      // --- Enable the ANALYSIS Package
      parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ANALYSIS");
      // --- Enable the ANALYSISalice Package
      parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ANALYSISalice");
      // --- Enable the CORRFW Package
      parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("CORRFW");
      // --- Enable the PWGHFbase Package
      parFile="PWGHFbase.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFbase");
      // --- Enable the PWGHFvertexingHF Package
      parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFvertexingHF");
    }
    gProof->ShowEnabledPackages(); // show a list of enabled packages
  }


  // Create Alien plugin, if requested
  if(useAlienPlugin) {  
    if(analysisMode!="grid") {printf("Analysis mode must be grid, to use alien plugin\n"); return;}
    AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles);  
    if(!alienHandler) return;
  }


  //-------------------------------------------------------------------
  // Prepare input
  TChain *chainAOD = 0;
  TString dataset; // for proof

  if(!useAlienPlugin) {
    TString makeAODInputChain="../MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
    if(inputMode=="list") {
      // Local files
      gROOT->LoadMacro(makeAODInputChain.Data());
      chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
      //chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
      printf("ENTRIES %d\n",chainAOD->GetEntries());
    } else if(inputMode=="xml") {
      // xml
      gROOT->LoadMacro(makeAODInputChain.Data());
      chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
    } else if(inputMode=="dataset") {
      // CAF dataset
      //gProof->ShowDataSets();
      dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100";
    }
  }

  // Create the analysis manager
  AliAnalysisManager *mgr  = new AliAnalysisManager("My Manager","My Manager");
  mgr->SetDebugLevel(10);
  // Connect plug-in to the analysis manager
  if(useAlienPlugin) mgr->SetGridHandler(alienHandler);

  // Input
  AliAODInputHandler *inputHandler = new AliAODInputHandler("handler","handler for D2H");
  if(analysisMode=="proof" ) {
    inputHandler->AddFriend("./AliAOD.VertexingHF.root");
    //inputHandler->AddFriend("deltas/AliAOD.VertexingHF.root");
    if(saveProofToAlien) mgr->SetSpecialOutputLocation(proofOutdir);
  }
  mgr->SetInputEventHandler(inputHandler);
  //-------------------------------------------------------------------

  
  //-------------------------------------------------------------------
  // Analysis tasks (wagons of the train)   
  //
  // First add the task for the PID response setting
  gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
  AliAnalysisTaskSE *setupTask = AddTaskPIDResponse(kFALSE,kTRUE);

  TString taskName;
  
  ////// ADD THE FULL D2H TRAIN
  /*taskName="../AddD2HTrain.C"; taskName.Prepend(loadMacroPath.Data());
  gROOT->LoadMacro(taskName.Data());
  Bool_t readMC=kFALSE;
  AddD2HTrain(readMC);//,1,0,0,0,0,0,0,0,0,0,0);*/
  
  ////// OR ADD INDIVIDUAL TASKS
  
  
  /*  taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
    */  
    taskName="AddTaskD0Mass.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSED0Mass *d0massTask = AddTaskD0Mass();
    AliAnalysisTaskSED0Mass *d0massLikeSignTask = AddTaskD0Mass(1); 
    /*
    taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();

    taskName="AddTaskDs.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEDs *dsTask = AddTaskDs();
    
    //taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
    //gROOT->LoadMacro(taskName.Data());
    //AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
    
    taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
    
    taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
    

    taskName="AddTaskSECharmFraction.C"; 
    taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    Int_t switchMC[5]={0,0,0,0,0};
    Int_t ppPbPb=1;// 0 for pp, 1 for PbPb, used to siwtch on/off the removal of daughters from the primary vertex
    AliAnalysisTaskSECharmFraction *cFractTask = AddTaskSECharmFraction("standard",switchMC,readMC,kTRUE,kFALSE,"D0toKpiCharmFractCuts.root","c",ppPbPb);
    // arguments: filename,switchMC,readmc,usepid,likesign,cutfilename,containerprefix

    
    // attach a private task (not committed)
    // (the files MyTask.h MyTask.cxx AddMyTask.C have to be declared in plugin
    // configuration, see below)
    
    if(analysisMode.Data()=="proof") {
    gProof->LoadMacro("MyTask.cxx++g");
    } else {
    gROOT->LoadMacro("MyTask.cxx++g");
    }
    gROOT->LoadMacro("AddMyTask.C");
    MyTask *myTask = AddMyTask();
    
    
    if(analysisMode.Data()=="proof") {
    gProof->LoadMacro("AliDStarJets.cxx++g");
    } else {
    gROOT->LoadMacro("AliDStarJets.cxx++g");
    }
    gROOT->LoadMacro("AddTaskDStarJets.C");
    AliDStarJets *myTask = AddTaskDStarJets();
  */
  //-------------------------------------------------------------------
  
  //
  // Run the analysis
  //    
  if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
  
  if(!mgr->InitAnalysis()) return;
  mgr->PrintStatus();
  if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
  if(analysisMode!="proof") {
    mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
  } else {
    // proof
    mgr->StartAnalysis(analysisMode.Data(),dataset.Data(),nentries,firstentry);
  }
  
  return;
}
//_____________________________________________________________________________
//
AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE)
{
  // Check if user has a valid token, otherwise make one. This has limitations.
  // One can always follow the standard procedure of calling alien-token-init then
  //   source /tmp/gclient_env_$UID in the current shell.
   AliAnalysisAlien *plugin = new AliAnalysisAlien();
   // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
   plugin->SetRunMode(pluginmode.Data());
   plugin->SetUser();
   // Set versions of used packages
   plugin->SetAPIVersion("V1.1x");
   plugin->SetROOTVersion();
   plugin->SetAliROOTVersion();
   plugin->SetNtestFiles(1);
   gROOT->LoadMacro("$ALICE_ROOT/PWGHF/vertexingHF/AddGoodRuns.C");

   // Declare input data to be processed.
   //************************************************
   // Set data search pattern for DATA
   //************************************************  
   //Method 1: To create automatically xml through plugin  
   plugin->SetGridDataDir("/alice/data/2010/LHC10d"); // specify LHC period
   plugin->SetDataPattern("pass2/AOD018/*AliAOD.root"); // specify reco pass and AOD set
   plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
   // OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
   // Adds only the good runs from the Monalisa Run Condition Table
   // More than one period can be added but the period name has to be removed from GridDataDir (to be tested)
   Int_t totruns=0;
   //totruns += AddGoodRuns(plugin,"LHC10b"); // specify LHC period
   //totruns += AddGoodRuns(plugin,"LHC10c"); // specify LHC period
   totruns += AddGoodRuns(plugin,"LHC10d"); // specify LHC period
   plugin->SetNrunsPerMaster(totruns);

   // Method 2: Declare existing data files (e.g xml collections)

   //plugin->AddDataFile("/alice/cern.ch/user/r/rbala/000168068_000170593.xml");
   //  plugin->SetDataPattern("*AliAOD.root");
   //  plugin->SetFriendChainName("./AliAOD.VertexingHF.root"); 

   //************************************************
   // Set data search pattern for MONTECARLO
   //************************************************
   /* 
   plugin->SetGridDataDir("/alice/sim/LHC10d3"); // specify MC sample
   plugin->SetDataPattern("AOD005/*AliAOD.root"); // specify AOD set
   plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
   // OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
   // Adds only the good runs from the Monalisa Run Condition Table 
   // More than one period can be added!
   Int_t totruns=0;
   totruns += AddGoodRuns(plugin,"LHC10b","LHC10d3"); // specify LHC period for anchor runs; and the name of the MC production
   //totruns += AddGoodRuns(plugin,"LHC10c","LHC10f7"); // specify LHC period for anchor runs;  and the name of the MC production
   //totruns += AddGoodRuns(plugin,"LHC10d","LHC10f7"); // specify LHC period for anchor runs;  and the name of the MC production
   plugin->SetNrunsPerMaster(totruns);
   */
   //
   // Define alien work directory where all files will be copied. Relative to alien $HOME.
   plugin->SetGridWorkingDir("myHFanalysis");
   // Name of executable
   plugin->SetExecutable("myHFanalysis.sh");
   // Declare alien output directory. Relative to working directory.
   plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
   // Declare the analysis source files names separated by blancs. To be compiled runtime
   // using ACLiC on the worker nodes.
   //plugin->SetAnalysisSource("AliDStarJets.cxx");
   // Declare all libraries (other than the default ones for the framework. These will be
   // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
   plugin->SetAdditionalLibs("libPWGflowBase.so libPWGflowTasks.so libPWGHFbase.so libPWGHFvertexingHF.so");
   // use par files
   if(useParFiles) {
     plugin->EnablePackage("STEERBase.par");
     plugin->EnablePackage("ESD.par");
     plugin->EnablePackage("AOD.par");
     plugin->EnablePackage("ANALYSIS.par");
     plugin->EnablePackage("OADB.par");
     plugin->EnablePackage("ANALYSISalice.par");
     plugin->EnablePackage("CORRFW.par");
     plugin->EnablePackage("PWGHFbase.par");
     plugin->EnablePackage("PWGHFvertexingHF.par");
   }
   plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS  -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");

   plugin->SetDefaultOutputs(kTRUE);
   // merging via jdl
   plugin->SetMergeViaJDL(kTRUE);
   plugin->SetOneStageMerging(kFALSE);
   plugin->SetMaxMergeStages(2);

   // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
   plugin->SetAnalysisMacro("AnalysisHF.C");
   // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
   // Optionally modify the name of the generated JDL (default analysis.jdl)
   plugin->SetJDLName("TaskHF.jdl");

   return plugin;
}
Commit	Line	Data
8931206f	1	class AliAnalysisGrid;
54d54d1a	2	class AliAnalysisAlien;
8931206f	3
	4	void RunAnalysisAODVertexingHF()
	5	{
	6	//
	7	// Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
	8	// It has the structure of a Analysis Train:
	9	// - in this macro, change things related to running mode
	10	// and input preparation
	11	// - add your task using a AddTaskXXX macro
	12	//
	13	// A.Dainese, andrea.dainese@lnl.infn.it
	14	// "grid" mode added by R.Bala, bala@to.infn.it
	15	//
	16
	17
968144ac	18	gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");
8931206f	19	//
	20	TString trainName = "D2H";
	21	TString analysisMode = "grid"; // "local", "grid", or "proof"
	22	TString inputMode = "list"; // "list", "xml", or "dataset"
	23	Long64_t nentries=123567890,firstentry=0;
9124d874	24	Bool_t useParFiles=kFALSE;
8931206f	25	Bool_t useAlienPlugin=kTRUE;
7dc1b6b2	26	TString pluginmode="full";
8931206f	27	Bool_t saveProofToAlien=kFALSE;
8931206f	28	TString proofOutdir = "";
0694cdc8	29	TString loadMacroPath="$ALICE_ROOT/PWGHF/vertexingHF/macros/";
8931206f	30	//TString loadMacroPath="./"; // this is normally needed for CAF
	31	//
	32
	33	if(analysisMode=="grid") {
	34	// Connect to AliEn
	35	TGrid::Connect("alien://");
	36	} else if(analysisMode=="proof") {
	37	// Connect to the PROOF cluster
	38	if(inputMode!="dataset") {printf("Input mode must be dataset, for proof analysis\n"); return;}
	39	gEnv->SetValue("XSec.GSI.DelegProxy","2");
	40	TProof::Open("alicecaf");
	41	//TProof::Reset("alicecaf");
	42	if(saveProofToAlien) {
	43	TGrid::Connect("alien://");
	44	if(gGrid) {
	45	TString homedir = gGrid->GetHomeDirectory();
	46	TString workdir = homedir + trainName;
	47	if(!gGrid->Cd(workdir)) {
	48	gGrid->Cd(homedir);
	49	if(gGrid->Mkdir(workdir)) {
	50	gGrid->Cd(trainName);
	51	::Info("VertexingTrain::Connect()", "Directory %s created", gGrid->Pwd());
	52	}
	53	}
	54	gGrid->Mkdir("proof_output");
	55	gGrid->Cd("proof_output");
	56	proofOutdir = Form("alien://%s", gGrid->Pwd());
	57	}
	58	}
	59	}
	60
	61
	62	// AliRoot libraries
	63	if(analysisMode=="local" \|\| analysisMode=="grid") {
	64	TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
	65	gROOT->LoadMacro(loadLibraries.Data());
	66	LoadLibraries(useParFiles);
	67	} else if (analysisMode=="proof") {
	68	gSystem->Load("libTree.so");
	69	gSystem->Load("libGeom.so");
	70	gSystem->Load("libPhysics.so");
	71	gSystem->Load("libVMC.so");
	72	gSystem->Load("libMinuit.so");
	73	// Enable the needed packages
	74	//gProof->ClearPackages();
	75	TString parDir="/afs/cern.ch/user/d/dainesea/code/";
	76	TString parFile;
	77	if(!useParFiles) {
	78	gProof->UploadPackage("AF-v4-17");
	79	gProof->EnablePackage("AF-v4-17");
0694cdc8	80	// --- Enable the PWGHFvertexingHF Package
0694cdc8	81	parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
8931206f	82	gProof->UploadPackage(parFile.Data());
0694cdc8	83	gProof->EnablePackage("PWGHFvertexingHF");
8931206f	84	} else {
	85	// --- Enable the STEERBase Package
	86	parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
	87	gProof->UploadPackage(parFile.Data());
	88	gProof->EnablePackage("STEERBase");
	89	// --- Enable the ESD Package
	90	parFile="ESD.par"; parFile.Prepend(parDir.Data());
	91	gProof->UploadPackage(parFile.Data());
	92	gProof->EnablePackage("ESD");
	93	// --- Enable the AOD Package
	94	parFile="AOD.par"; parFile.Prepend(parDir.Data());
	95	gProof->UploadPackage(parFile.Data());
	96	gProof->EnablePackage("AOD");
	97	// --- Enable the ANALYSIS Package
	98	parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
	99	gProof->UploadPackage(parFile.Data());
	100	gProof->EnablePackage("ANALYSIS");
	101	// --- Enable the ANALYSISalice Package
	102	parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
	103	gProof->UploadPackage(parFile.Data());
	104	gProof->EnablePackage("ANALYSISalice");
	105	// --- Enable the CORRFW Package
	106	parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
	107	gProof->UploadPackage(parFile.Data());
	108	gProof->EnablePackage("CORRFW");
0694cdc8	109	// --- Enable the PWGHFbase Package
0694cdc8	110	parFile="PWGHFbase.par"; parFile.Prepend(parDir.Data());
8931206f	111	gProof->UploadPackage(parFile.Data());
0694cdc8	112	gProof->EnablePackage("PWGHFbase");
	113	// --- Enable the PWGHFvertexingHF Package
	114	parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
8931206f	115	gProof->UploadPackage(parFile.Data());
0694cdc8	116	gProof->EnablePackage("PWGHFvertexingHF");
8931206f	117	}
	118	gProof->ShowEnabledPackages(); // show a list of enabled packages
	119	}
	120
	121
	122	// Create Alien plugin, if requested
	123	if(useAlienPlugin) {
	124	if(analysisMode!="grid") {printf("Analysis mode must be grid, to use alien plugin\n"); return;}
	125	AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles);
	126	if(!alienHandler) return;
	127	}
	128
	129
	130	//-------------------------------------------------------------------
	131	// Prepare input
	132	TChain *chainAOD = 0;
	133	TString dataset; // for proof
	134
	135	if(!useAlienPlugin) {
cc3209fb	136	TString makeAODInputChain="../MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
8931206f	137	if(inputMode=="list") {
	138	// Local files
	139	gROOT->LoadMacro(makeAODInputChain.Data());
	140	chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
	141	//chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
	142	printf("ENTRIES %d\n",chainAOD->GetEntries());
	143	} else if(inputMode=="xml") {
	144	// xml
	145	gROOT->LoadMacro(makeAODInputChain.Data());
	146	chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
	147	} else if(inputMode=="dataset") {
	148	// CAF dataset
	149	//gProof->ShowDataSets();
	150	dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100";
	151	}
	152	}
	153
	154	// Create the analysis manager
	155	AliAnalysisManager *mgr = new AliAnalysisManager("My Manager","My Manager");
	156	mgr->SetDebugLevel(10);
	157	// Connect plug-in to the analysis manager
	158	if(useAlienPlugin) mgr->SetGridHandler(alienHandler);
	159
	160	// Input
5b37c6e5	161	AliAODInputHandler *inputHandler = new AliAODInputHandler("handler","handler for D2H");
8931206f	162	if(analysisMode=="proof" ) {
efb0a9e5	163	inputHandler->AddFriend("./AliAOD.VertexingHF.root");
efb0a9e5	164	//inputHandler->AddFriend("deltas/AliAOD.VertexingHF.root");
8931206f	165	if(saveProofToAlien) mgr->SetSpecialOutputLocation(proofOutdir);
	166	}
	167	mgr->SetInputEventHandler(inputHandler);
	168	//-------------------------------------------------------------------
	169
	170
	171	//-------------------------------------------------------------------
	172	// Analysis tasks (wagons of the train)
	173	//
b79bfc3e	174	// First add the task for the PID response setting
	175	gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
	176	AliAnalysisTaskSE *setupTask = AddTaskPIDResponse(kFALSE,kTRUE);
	177
8931206f	178	TString taskName;
	179
	180	////// ADD THE FULL D2H TRAIN
cc3209fb	181	/*taskName="../AddD2HTrain.C"; taskName.Prepend(loadMacroPath.Data());
8931206f	182	gROOT->LoadMacro(taskName.Data());
8931206f	183	Bool_t readMC=kFALSE;
efb0a9e5	184	AddD2HTrain(readMC);//,1,0,0,0,0,0,0,0,0,0,0);*/
8931206f	185
	186	////// OR ADD INDIVIDUAL TASKS
	187
efb0a9e5	188
efb0a9e5	189	/* taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
8931206f	190	gROOT->LoadMacro(taskName.Data());
8931206f	191	AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
c1179c57	192	*/
8931206f	193	taskName="AddTaskD0Mass.C"; taskName.Prepend(loadMacroPath.Data());
	194	gROOT->LoadMacro(taskName.Data());
	195	AliAnalysisTaskSED0Mass *d0massTask = AddTaskD0Mass();
	196	AliAnalysisTaskSED0Mass *d0massLikeSignTask = AddTaskD0Mass(1);
efb0a9e5	197	/*
8931206f	198	taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
	199	gROOT->LoadMacro(taskName.Data());
	200	AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();
c1179c57	201
8931206f	202	taskName="AddTaskDs.C"; taskName.Prepend(loadMacroPath.Data());
	203	gROOT->LoadMacro(taskName.Data());
	204	AliAnalysisTaskSEDs *dsTask = AddTaskDs();
	205
	206	//taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
	207	//gROOT->LoadMacro(taskName.Data());
	208	//AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
	209
	210	taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
	211	gROOT->LoadMacro(taskName.Data());
	212	AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
	213
8931206f	214	taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
	215	gROOT->LoadMacro(taskName.Data());
	216	AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
	217
e047b348	218
	219	taskName="AddTaskSECharmFraction.C";
	220	taskName.Prepend(loadMacroPath.Data());
8931206f	221	gROOT->LoadMacro(taskName.Data());
e047b348	222	Int_t switchMC[5]={0,0,0,0,0};
cc3209fb	223	Int_t ppPbPb=1;// 0 for pp, 1 for PbPb, used to siwtch on/off the removal of daughters from the primary vertex
cc3209fb	224	AliAnalysisTaskSECharmFraction *cFractTask = AddTaskSECharmFraction("standard",switchMC,readMC,kTRUE,kFALSE,"D0toKpiCharmFractCuts.root","c",ppPbPb);
e047b348	225	// arguments: filename,switchMC,readmc,usepid,likesign,cutfilename,containerprefix
cc3209fb	226
8931206f	227
	228	// attach a private task (not committed)
	229	// (the files MyTask.h MyTask.cxx AddMyTask.C have to be declared in plugin
	230	// configuration, see below)
	231
	232	if(analysisMode.Data()=="proof") {
	233	gProof->LoadMacro("MyTask.cxx++g");
	234	} else {
	235	gROOT->LoadMacro("MyTask.cxx++g");
	236	}
	237	gROOT->LoadMacro("AddMyTask.C");
	238	MyTask *myTask = AddMyTask();
	239
	240
	241	if(analysisMode.Data()=="proof") {
	242	gProof->LoadMacro("AliDStarJets.cxx++g");
	243	} else {
	244	gROOT->LoadMacro("AliDStarJets.cxx++g");
	245	}
	246	gROOT->LoadMacro("AddTaskDStarJets.C");
	247	AliDStarJets *myTask = AddTaskDStarJets();
	248	*/
	249	//-------------------------------------------------------------------
	250
	251	//
	252	// Run the analysis
	253	//
	254	if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
	255
	256	if(!mgr->InitAnalysis()) return;
	257	mgr->PrintStatus();
	258	if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
	259	if(analysisMode!="proof") {
	260	mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
	261	} else {
	262	// proof
	263	mgr->StartAnalysis(analysisMode.Data(),dataset.Data(),nentries,firstentry);
	264	}
	265
	266	return;
	267	}
	268	//_____________________________________________________________________________
	269	//
	270	AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE)
	271	{
	272	// Check if user has a valid token, otherwise make one. This has limitations.
	273	// One can always follow the standard procedure of calling alien-token-init then
	274	// source /tmp/gclient_env_$UID in the current shell.
8931206f	275	AliAnalysisAlien *plugin = new AliAnalysisAlien();
	276	// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
	277	plugin->SetRunMode(pluginmode.Data());
a9e59aee	278	plugin->SetUser();
8931206f	279	// Set versions of used packages
8931206f	280	plugin->SetAPIVersion("V1.1x");
a9e59aee	281	plugin->SetROOTVersion();
a9e59aee	282	plugin->SetAliROOTVersion();
c1179c57	283	plugin->SetNtestFiles(1);
0694cdc8	284	gROOT->LoadMacro("$ALICE_ROOT/PWGHF/vertexingHF/AddGoodRuns.C");
9be57b17	285
8931206f	286	// Declare input data to be processed.
b9015c51	287	//************************************************
b9015c51	288	// Set data search pattern for DATA
c1179c57	289	//************************************************
c1179c57	290	//Method 1: To create automatically xml through plugin
9124d874	291	plugin->SetGridDataDir("/alice/data/2010/LHC10d"); // specify LHC period
9124d874	292	plugin->SetDataPattern("pass2/AOD018/*AliAOD.root"); // specify reco pass and AOD set
b2b62321	293	plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
b9015c51	294	// OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
46627015	295	// Adds only the good runs from the Monalisa Run Condition Table
b9015c51	296	// More than one period can be added but the period name has to be removed from GridDataDir (to be tested)
b2b62321	297	Int_t totruns=0;
9124d874	298	//totruns += AddGoodRuns(plugin,"LHC10b"); // specify LHC period
b9015c51	299	//totruns += AddGoodRuns(plugin,"LHC10c"); // specify LHC period
9124d874	300	totruns += AddGoodRuns(plugin,"LHC10d"); // specify LHC period
b2b62321	301	plugin->SetNrunsPerMaster(totruns);
c1179c57	302
	303	// Method 2: Declare existing data files (e.g xml collections)
	304
	305	//plugin->AddDataFile("/alice/cern.ch/user/r/rbala/000168068_000170593.xml");
	306	// plugin->SetDataPattern("*AliAOD.root");
	307	// plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
	308
b9015c51	309	//************************************************
	310	// Set data search pattern for MONTECARLO
	311	//************************************************
9124d874	312	/*
b2b62321	313	plugin->SetGridDataDir("/alice/sim/LHC10d3"); // specify MC sample
b2b62321	314	plugin->SetDataPattern("AOD005/*AliAOD.root"); // specify AOD set
b9015c51	315	plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
	316	// OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
	317	// Adds only the good runs from the Monalisa Run Condition Table
	318	// More than one period can be added!
	319	Int_t totruns=0;
b2b62321	320	totruns += AddGoodRuns(plugin,"LHC10b","LHC10d3"); // specify LHC period for anchor runs; and the name of the MC production
	321	//totruns += AddGoodRuns(plugin,"LHC10c","LHC10f7"); // specify LHC period for anchor runs; and the name of the MC production
	322	//totruns += AddGoodRuns(plugin,"LHC10d","LHC10f7"); // specify LHC period for anchor runs; and the name of the MC production
b9015c51	323	plugin->SetNrunsPerMaster(totruns);
9124d874	324	*/
b9015c51	325	//
8931206f	326	// Define alien work directory where all files will be copied. Relative to alien $HOME.
8931206f	327	plugin->SetGridWorkingDir("myHFanalysis");
c1179c57	328	// Name of executable
efc42c41	329	plugin->SetExecutable("myHFanalysis.sh");
8931206f	330	// Declare alien output directory. Relative to working directory.
	331	plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
	332	// Declare the analysis source files names separated by blancs. To be compiled runtime
	333	// using ACLiC on the worker nodes.
	334	//plugin->SetAnalysisSource("AliDStarJets.cxx");
	335	// Declare all libraries (other than the default ones for the framework. These will be
	336	// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
be47521d	337	plugin->SetAdditionalLibs("libPWGflowBase.so libPWGflowTasks.so libPWGHFbase.so libPWGHFvertexingHF.so");
8931206f	338	// use par files
	339	if(useParFiles) {
	340	plugin->EnablePackage("STEERBase.par");
	341	plugin->EnablePackage("ESD.par");
	342	plugin->EnablePackage("AOD.par");
	343	plugin->EnablePackage("ANALYSIS.par");
1b575730	344	plugin->EnablePackage("OADB.par");
8931206f	345	plugin->EnablePackage("ANALYSISalice.par");
8931206f	346	plugin->EnablePackage("CORRFW.par");
0694cdc8	347	plugin->EnablePackage("PWGHFbase.par");
0694cdc8	348	plugin->EnablePackage("PWGHFvertexingHF.par");
8931206f	349	}
be47521d	350	plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");
a9e59aee	351
8931206f	352	plugin->SetDefaultOutputs(kTRUE);
9a36a6cc	353	// merging via jdl
	354	plugin->SetMergeViaJDL(kTRUE);
	355	plugin->SetOneStageMerging(kFALSE);
	356	plugin->SetMaxMergeStages(2);
	357
8931206f	358	// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
	359	plugin->SetAnalysisMacro("AnalysisHF.C");
	360	// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
8931206f	361	// Optionally modify the name of the generated JDL (default analysis.jdl)
8931206f	362	plugin->SetJDLName("TaskHF.jdl");
8931206f	363
	364	return plugin;
	365	}