#include <TMath.h>
#endif
+#ifndef ROOT_TMap
+#include <TMap.h>
+#endif
+
+class AliAnalysisManager;
+class AliAnalysisTaskCfg;
class TGridJDL;
class AliAnalysisAlien : public AliAnalysisGrid {
AliAnalysisAlien(const AliAnalysisAlien& other);
AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
// Setters
+ virtual void AddAdditionalLibrary(const char *name);
virtual void AddIncludePath(const char *path);
virtual void AddRunNumber(Int_t run);
virtual void AddRunNumber(const char *run);
+ virtual void AddRunList(const char *runList);
virtual void AddDataFile(const char *lfn);
virtual void AddExternalPackage(const char *name);
virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;}
virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;}
virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
+ virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;}
virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;}
virtual void SetPrice(Int_t price=1) {fPrice = price;}
virtual void SetJobTag(const char *tag="") {fJobTag = tag;}
virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;}
virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;}
+ virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;}
virtual void SetSplitMode(const char *type="se") {fSplitMode = type;}
virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;}
virtual void SetAPIVersion(const char *version) {fAPIVersion = version;}
virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;}
virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;}
virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;}
+ virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;}
virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list;};
virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;}
+ virtual void SetMergeDirName(const char *name) {fMergeDirName = name;}
virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;}
virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;}
virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);}
virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;}
virtual void SetPreferedSE(const char *se);
virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;}
- virtual void SetRunPrefix(const char *prefix) {fRunPrefix = prefix;}
+ virtual void SetRegisterExcludes(const char *list) {fRegisterExcludes = list;}
+ virtual void SetRunPrefix(const char *prefix);
virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;}
virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;}
TGridJDL *GetMergingJDL() const {return fMergingJDL;}
const char *GetGridOutputDir() const {return fGridOutputDir;}
//Utilities
- Bool_t CheckFileCopy(const char *alienpath);
+ void AddModule(AliAnalysisTaskCfg *module);
+ void AddModules(TObjArray *list);
+ AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename="");
+ Int_t GetNmodules() const;
+ AliAnalysisTaskCfg *GetModule(const char *name);
+ Bool_t LoadModules();
+ Bool_t GenerateTest(const char *name, const char *modname="");
+ Bool_t GenerateTrain(const char *name);
virtual Bool_t CreateDataset(const char *pattern);
+ Bool_t CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output="data.txt", const char *archivefile="", const char *outputdir="data");
virtual Bool_t CreateJDL();
virtual void EnablePackage(const char *package);
static Bool_t DirectoryExists(const char *lfn);
static Bool_t FileExists(const char *lfn);
static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
- static Bool_t CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, Bool_t submit=kTRUE, const char *jdl="");
- static Bool_t MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0, Int_t ichunk=0);
+ const char *GetListOfFiles(const char *type);
+ Bool_t CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl="");
+ static AliAnalysisManager *LoadAnalysisManager(const char *fname);
+ static Bool_t MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0);
virtual Bool_t MergeOutputs();
virtual void Print(Option_t *option="") const;
virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
virtual void WriteProductionFile(const char *filename) const;
virtual void WriteValidationScript(Bool_t merge=kFALSE);
+// PROOF mode
+ virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;}
+ virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;}
+ virtual const char *GetProofDataSet() const {return fProofDataSet.Data();}
+ virtual void SetProofParameter(const char *pname, const char *value);
+ const char *GetProofParameter(const char *pname) const;
+ virtual void SetProofReset(Int_t mode) {fProofReset = mode;}
+ virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;}
+ virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;}
+ virtual void SetRootVersionForProof(const char *version) {fRootVersionForProof = version;}
+ virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;}
+ // .txt file containing the list of files to be chained in test mode
+ virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;}
+ virtual TChain *GetChainForTestMode(const char *treeName) const;
+
protected:
void CdWork();
Bool_t CheckInputData();
Bool_t IsCollection(const char *lfn) const;
virtual Bool_t IsSingleOutput() const;
Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
+ Bool_t LoadModule(AliAnalysisTaskCfg *mod);
+ Bool_t CheckDependencies();
+ Bool_t CheckFileCopy(const char *alienpath);
private:
TGridJDL *fGridJDL; //! JDL maker
Int_t fRunRange[2]; // Run range
Int_t fNrunsPerMaster; // Number of runs per masterjob
Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk
+ Int_t fMaxMergeStages; // Maximum number of merging stages
Int_t fNsubmitted; // Number of jobs submitted
Int_t fProductionMode; // Production mode (0-off, 1-on)
Int_t fOutputToRunNo; // Use run number as output directory
Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access
Int_t fOverwriteMode; // Overwrite existing files if any
Int_t fNreplicas; // Number of replicas for the output files
+ Int_t fNproofWorkers; // Number of workers in proof mode
+ Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
+ Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard
TString fRunNumbers; // List of runs to be processed
TString fExecutable; // Executable script for AliEn job
TString fExecutableCommand; // Command(s) to be executed in the executable script
TString fExecutableArgs; // arguments added to the executable script after the analysis macro
TString fAnalysisMacro; // Root macro steering the analysis
TString fAnalysisSource; // User analysis implementation (.cxx) file(s)
+ TString fValidationScript; // Name of the validation script
TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
TString fSplitMode; // Job split mode
TString fInputFormat; // Input format (xml-single)
TString fDatasetName; // Dataset xml file to be created
TString fJDLName; // JDL file to be generated
+ TString fTerminateFiles; // List of output files produced during Terminate
TString fMergeExcludes; // List of output files excluded from merging
+ TString fRegisterExcludes; // List of liles not to be registered/merged
TString fIncludePath; // Include path
TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment.
TString fFriendChainName; // File name to construct friend chain (for AOD)
TString fJobTag; // Job tag
TString fOutputSingle; // Directory name for the output when split is per file
TString fRunPrefix; // Run prefix to be applied to run numbers
+ TString fProofCluster; // Proof cluster name
+ TString fProofDataSet; // Proof dataset to be used
+ TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
+ TString fRootVersionForProof; // ROOT version to be used in PROOF mode. The default one taken if empty.
+ TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster
+ TString fMergeDirName; // Name of the directory that should be added to the output directory
TObjArray *fInputFiles; // List of input files to be processed by the job
TObjArray *fPackages; // List of packages to be used
+ TObjArray *fModules; // List of AliAnalysisTaskCfg modules
+ TMap fProofParam; // Key-value pairs for proof mode
- ClassDef(AliAnalysisAlien, 13) // Class providing some AliEn utilities
+ ClassDef(AliAnalysisAlien, 20) // Class providing some AliEn utilities
};
#endif
git://git.uio.no / u / mrichter / AliRoot.git / blobdiff