]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - FMD/AliFMDPedestalDA.cxx
Fix range and binning on histograms
[u/mrichter/AliRoot.git] / FMD / AliFMDPedestalDA.cxx
index 21aa5c814e13de1371b91edc46c8e01bdcf21bc9..2be9347347a39637a34db354a15b94eb76fde235 100644 (file)
 //
 
 #include "AliFMDPedestalDA.h"
-#include "iostream"
-#include "fstream"
+#include "AliFMDAltroMapping.h"
+#include "AliFMDParameters.h"
+#include "AliFMDCalibPedestal.h"
+#include "AliFMDDigit.h"
 #include "AliLog.h"
-#include "TF1.h"
-#include "TObject.h"
-#include "TMath.h"
+#include <iostream>
+#include <fstream>
+#include <iomanip>
+#include <TFile.h>
+#include <TF1.h>
+#include <TObject.h>
+#include <TMath.h>
+#include <TSystem.h>
+#include <TDatime.h>
+#include <TH2.h>
 
 //_____________________________________________________________________
 ClassImp(AliFMDPedestalDA)
 
 //_____________________________________________________________________
-AliFMDPedestalDA::AliFMDPedestalDA() : AliFMDBaseDA(),
-  fCurrentChannel(1),
-  fPedSummary("PedestalSummary","pedestals",51200,0,51200),
-  fNoiseSummary("NoiseSummary","noise",51200,0,51200),
-  fZSfileFMD1(),
-  fZSfileFMD2(),
-  fZSfileFMD3()
+AliFMDPedestalDA::AliFMDPedestalDA() 
+  : AliFMDBaseDA(),
+    fCurrentChannel(1),
+    fPedSummary("PedestalSummary","pedestals",51200,0,51200),
+    fNoiseSummary("NoiseSummary","noise",51200,0,51200),
+    fZSfileFMD1(),
+    fZSfileFMD2(),
+    fZSfileFMD3(), 
+    fMinTimebin(3 * 4 * 3 * 16), // 3 ddls, 4 FECs, 3 Altros, 16 channels
+    fMaxTimebin(3 * 4 * 3 * 16), // 3 ddls, 4 FECs, 3 Altros, 16 channels
+    fSummaryFMD1i(0),
+    fSummaryFMD2i(0),
+    fSummaryFMD2o(0),
+    fSummaryFMD3i(0),
+    fSummaryFMD3o(0)
 {
+  // Default constructor 
+  Rotate("peds.csv", 3);
   fOutputFile.open("peds.csv");
+  Rotate("ddl3072.csv", 10);
   fZSfileFMD1.open("ddl3072.csv");
+  Rotate("ddl3073.csv", 10);
   fZSfileFMD2.open("ddl3073.csv");
+  Rotate("ddl3074.csv", 10);
   fZSfileFMD3.open("ddl3074.csv");  
 }
 
@@ -61,20 +83,33 @@ AliFMDPedestalDA::AliFMDPedestalDA(const AliFMDPedestalDA & pedDA) :
   fNoiseSummary("NoiseSummary","noise",51200,0,51200),
   fZSfileFMD1(),
   fZSfileFMD2(),
-  fZSfileFMD3()
+  fZSfileFMD3(),
+  fMinTimebin(pedDA.fMinTimebin),
+  fMaxTimebin(pedDA.fMaxTimebin),
+  fSummaryFMD1i(pedDA.fSummaryFMD1i),
+  fSummaryFMD2i(pedDA.fSummaryFMD2i),
+  fSummaryFMD2o(pedDA.fSummaryFMD2o),
+  fSummaryFMD3i(pedDA.fSummaryFMD3i),
+  fSummaryFMD3o(pedDA.fSummaryFMD3o)
 {
-  
+  // Copy constructor 
 }
 
 //_____________________________________________________________________
 AliFMDPedestalDA::~AliFMDPedestalDA() 
 { 
+  // Destructor.
 }
 
 //_____________________________________________________________________
 void AliFMDPedestalDA::Init() 
 { 
+  // Initialise 
   SetRequiredEvents(1000);
+  fMinTimebin.Reset(1024);
+  fMaxTimebin.Reset(-1);
+
+
 }
 
 //_____________________________________________________________________
@@ -84,36 +119,43 @@ void AliFMDPedestalDA::AddChannelContainer(TObjArray* sectorArray,
                                           UShort_t sec, 
                                           UShort_t strip) 
 {
+  // Add a channel to the containers.
+  //
+  // Parameters:
+  //     sectorArray  Array of sectors
+  //     det          Detector 
+  //     ring         Ring
+  //     sec          Sector 
+  //     strip        Strip
   AliFMDParameters* pars        = AliFMDParameters::Instance();
-  UInt_t             samples     = pars->GetSampleRate(det, ring, sec, strip);
+  UInt_t            samples     = pars->GetSampleRate(det, ring, sec, strip);
   TObjArray*        sampleArray = new TObjArray(samples);
   sampleArray->SetOwner();
   for (UInt_t sample = 0; sample < samples; sample++) {
-    TH1S* hSample = new TH1S(Form("FMD%d%c[%02d,03%d]_%d",
-                                 det,ring,sec,strip,sample),
-                            Form("FMD%d%c[%02d,%03%d]_%d",
-                                 det,ring,sec,strip),
-                            1024,-.5,1023.5);
+    TString name(Form("FMD%d%c[%02d,%03d]_%d", det,ring,sec,strip,sample));
+    TH1S* hSample = new TH1S(name.Data(),name.Data(), 1024,-.5,1023.5);
     hSample->SetXTitle("ADC");
     hSample->SetYTitle("Events");
     hSample->SetDirectory(0);
     sampleArray->AddAt(hSample, sample);
   }
   sectorArray->AddAtAndExpand(sampleArray, strip);
-  
-
 }
 
 //_____________________________________________________________________
 void AliFMDPedestalDA::FillChannels(AliFMDDigit* digit) 
 {
+  // Fill ADC values from a digit into the corresponding histogram.
+  //
+  // Parameters:
+  //    digit Digit to fill ADC values for.
   UShort_t det   = digit->Detector();
   Char_t   ring  = digit->Ring();
   UShort_t sec   = digit->Sector();
   UShort_t strip = digit->Strip();
-
+  
   AliFMDParameters* pars     = AliFMDParameters::Instance();
-  UInt_t             samples  = pars->GetSampleRate(det, ring, sec, strip);
+  UInt_t            samples  = pars->GetSampleRate(det, ring, sec, strip);
   for (UInt_t sample = 0; sample < samples; sample++) {
     TH1S* hSample = GetChannel(det, ring, sec, strip, sample);
     hSample->Fill(digit->Count(sample));
@@ -121,25 +163,88 @@ void AliFMDPedestalDA::FillChannels(AliFMDDigit* digit)
   
 }
 
+//_____________________________________________________________________
+void AliFMDPedestalDA::MakeSummary(UShort_t det, Char_t ring)
+{
+  //Create summary hists for FMD pedestals
+  std::cout << "Making summary for FMD" << det << ring << " ..." << std::endl;
+  switch (det) { 
+  case 1: 
+    fSummaryFMD1i = MakeSummaryHistogram("ped", "Pedestals", det, ring);
+    break;
+  case 2:
+    switch (ring) { 
+    case 'I': case 'i':
+      fSummaryFMD2i = MakeSummaryHistogram("ped", "Pedestals", det, ring);
+      break;
+    case 'O': case 'o':
+      fSummaryFMD2o = MakeSummaryHistogram("ped", "Pedestals", det, ring);
+      break;
+    }
+    break;
+  case 3:
+    switch (ring) { 
+    case 'I': case 'i':
+      fSummaryFMD3i = MakeSummaryHistogram("ped", "Pedestals", det, ring);
+      break;
+    case 'O': case 'o':
+      fSummaryFMD3o = MakeSummaryHistogram("ped", "Pedestals", det, ring);
+      break;
+    }
+    break;
+  }
+}
+
 //_____________________________________________________________________
 void AliFMDPedestalDA::Analyse(UShort_t det, 
                               Char_t   ring, 
                               UShort_t sec, 
-                              UShort_t strip) {
-  
+                              UShort_t strip) 
+{
+  // Analyse a strip.  That is, compute the mean and spread of the ADC
+  // spectra for all strips.  Also output on files the values. 
+  //
+  // Parameters:
+  //     det   Detector
+  //     ring  Ring
+  //     sec   Sector 
+  //     strip Strip.
   AliFMDParameters* pars     = AliFMDParameters::Instance();
-  UInt_t             samples  = pars->GetSampleRate(det, ring, sec, strip);
+  TH2* summary = 0;
+  switch (det) { 
+  case 1: summary = fSummaryFMD1i; break;
+  case 2: 
+    switch (ring) { 
+    case 'I':  summary = fSummaryFMD2i; break;
+    case 'O':  summary = fSummaryFMD2o; break;
+    }
+    break;
+  case 3:
+    switch (ring) { 
+    case 'I':  summary = fSummaryFMD3i; break;
+    case 'O':  summary = fSummaryFMD3o; break;
+    }
+    break;
+  }
+  static bool first = true;
+  if (summary && first) { 
+    std::cout << "Filling summary " << summary->GetName() << std::endl;
+    first = false;
+  }
+
+  // Float_t           factor   = pars->GetPedestalFactor();
+  UInt_t            samples  = pars->GetSampleRate(det, ring, sec, strip);
   for (UShort_t sample = 0; sample < samples; sample++) {
   
-    TH1S* hChannel       = GetChannel(det, ring, sec, strip,sample);
+    TH1S* hChannel = GetChannel(det, ring, sec, strip,sample);
     if(hChannel->GetEntries() == 0) {
       //AliWarning(Form("No entries for FMD%d%c, sector %d, strip %d",
       //           det,ring,sec,strip));
       return;
     }
     
-    AliDebug(50, Form("Fitting FMD%d%c_%d_%d with %d entries",det,ring,sec,strip,
-                     hChannel->GetEntries()));
+    AliDebug(50, Form("Fitting FMD%d%c[%02d,%03d] with %d entries",
+                     det,ring,sec,strip, int(hChannel->GetEntries())));
     TF1 fitFunc("fitFunc","gausn",0,300);
     fitFunc.SetParameters(100,100,1);
     hChannel->Fit("fitFunc","Q0+","",10,200);
@@ -158,82 +263,101 @@ void AliFMDPedestalDA::Analyse(UShort_t det,
     UShort_t ddl, board, altro, channel;
     UShort_t timebin;
     
-    pars->Detector2Hardware(det,ring,sec,strip,sample,ddl,board,altro,channel,timebin);
+    pars->Detector2Hardware(det,ring,sec,strip,sample,
+                           ddl,board,altro,channel,timebin);
+    Int_t idx = HWIndex(ddl, board, altro, channel);
+    if (idx >= 0) { 
+      fMinTimebin[idx] = TMath::Min(Short_t(timebin),   fMinTimebin[idx]);
+      fMaxTimebin[idx] = TMath::Max(Short_t(timebin+1), fMaxTimebin[idx]);
+    }
     
+    std::ostream* zsFile = 0;
     switch(det) {
-    case 1:
-      fZSfileFMD1 << board << ',' << altro << ',' << channel << ',' << timebin << ','
-                 << mean  << ',' << rms << "\n"; break;
-    case 2:
-      fZSfileFMD2 << board << ',' << altro << ',' << channel << ',' << timebin << ','
-                 << mean  << ',' << rms << "\n"; break;
-    case 3:
-      fZSfileFMD3 << board << ',' << altro << ',' << channel << ',' << timebin << ','
-                 << mean  << ',' << rms << "\n"; break;
-    default:
-      AliWarning("Unknown sample!"); break;
+    case 1:  zsFile = &fZSfileFMD1; break;
+    case 2:  zsFile = &fZSfileFMD2; break;
+    case 3:  zsFile = &fZSfileFMD3; break;
+    default: AliWarning("Unknown sample!"); break;
       
     }
+    *zsFile << board   << ',' 
+           << altro   << ',' 
+           << channel << ',' 
+           << timebin << ','
+           << mean    << ',' 
+           << rms     << "\n";
     
     Float_t chi2ndf = 0;
+    
+    
     if(fitFunc.GetNDF())
       chi2ndf = fitFunc.GetChisquare() / fitFunc.GetNDF();
     
-    if(sample==samples-1) {
     
-      fOutputFile << det                         << ','
-                 << ring                        << ','
-                 << sec                         << ','
-                 << strip                       << ','
-                 << mean                        << ','
-                 << rms                         << ','
-                 << fitFunc.GetParameter(1)     << ','
-                 << fitFunc.GetParameter(2)     << ','
-                 << chi2ndf                     <<"\n";
-      
-      if(fSaveHistograms  ) {
-       gDirectory->cd(GetSectorPath(det, ring, sec, kTRUE));
-       TH1F* sumPed   = dynamic_cast<TH1F*>(gDirectory->Get("Pedestals"));
-       TH1F* sumNoise = dynamic_cast<TH1F*>(gDirectory->Get("Noise"));
-       Int_t nStr = (ring == 'I' ? 512 : 256);
-       if (!sumPed) {
-         sumPed = new TH1F("Pedestals", 
-                           Form("Summary of pedestals in FMD%d%c[%02d]", 
+    Int_t sampleToWrite = 2;
+    if      (samples == 2) sampleToWrite = 1;
+    else if (samples <  2) sampleToWrite = 0;
+    
+    if(sample != sampleToWrite) continue;
+    
+    
+    fOutputFile << det                         << ','
+               << ring                        << ','
+               << sec                         << ','
+               << strip                       << ','
+               << mean                        << ','
+               << rms                         << ','
+               << fitFunc.GetParameter(1)     << ','
+               << fitFunc.GetParameter(2)     << ','
+               << chi2ndf                     <<"\n";
+
+    if (summary) { 
+      Int_t bin = summary->FindBin(sec, strip);
+      summary->SetBinContent(bin, mean);
+      summary->SetBinError(bin, rms);
+    }
+
+    if(fSaveHistograms  ) {
+      gDirectory->cd(GetSectorPath(det, ring, sec, kTRUE));
+      TH1F* sumPed   = dynamic_cast<TH1F*>(gDirectory->Get("Pedestals"));
+      TH1F* sumNoise = dynamic_cast<TH1F*>(gDirectory->Get("Noise"));
+      Int_t nStr = (ring == 'I' ? 512 : 256);
+      if (!sumPed) {
+       sumPed = new TH1F("Pedestals", 
+                         Form("Summary of pedestals in FMD%d%c[%02d]", 
+                              det, ring, sec), 
+                         nStr, -.5, nStr-.5);
+       sumPed->SetXTitle("Strip");
+       sumPed->SetYTitle("Pedestal [ADC]");
+       sumPed->SetDirectory(gDirectory);
+      }
+      if (!sumNoise) { 
+       sumNoise = new TH1F("Noise", 
+                           Form("Summary of noise in FMD%d%c[%02d]", 
                                 det, ring, sec), 
                            nStr, -.5, nStr-.5);
-         sumPed->SetXTitle("Strip");
-         sumPed->SetYTitle("Pedestal [ADC]");
-         sumPed->SetDirectory(gDirectory);
-       }
-       if (!sumNoise) { 
-         sumNoise = new TH1F("Noise", 
-                             Form("Summary of noise in FMD%d%c[%02d]", 
-                                  det, ring, sec), 
-                             nStr, -.5, nStr-.5);
-         sumNoise->SetXTitle("Strip");
-         sumNoise->SetYTitle("Noise [ADC]");
-         
-         sumNoise->SetDirectory(gDirectory);
-       }
-       sumPed->SetBinContent(strip+1, mean);
-       sumPed->SetBinError(strip+1, rms);
-       sumNoise->SetBinContent(strip+1, rms);
-      
-       if(sumNoise->GetEntries() == nStr)
-         sumNoise->Write(sumNoise->GetName(),TObject::kOverwrite);
-       if(sumPed->GetEntries() == nStr)
-         sumPed->Write(sumPed->GetName(),TObject::kOverwrite);
+       sumNoise->SetXTitle("Strip");
+       sumNoise->SetYTitle("Noise [ADC]");
        
-       fPedSummary.SetBinContent(fCurrentChannel,mean);
-       
-       fNoiseSummary.SetBinContent(fCurrentChannel,rms);
-       fCurrentChannel++;
-       
-       gDirectory->cd(GetStripPath(det, ring, sec, strip, kTRUE));
-       hChannel->GetXaxis()->SetRange(1,1024);
-       
-       hChannel->Write();
+       sumNoise->SetDirectory(gDirectory);
       }
+      sumPed->SetBinContent(strip+1, mean);
+      sumPed->SetBinError(strip+1, rms);
+      sumNoise->SetBinContent(strip+1, rms);
+      
+      if(sumNoise->GetEntries() == nStr)
+       sumNoise->Write(sumNoise->GetName(),TObject::kOverwrite);
+      if(sumPed->GetEntries() == nStr)
+       sumPed->Write(sumPed->GetName(),TObject::kOverwrite);
+      
+      fPedSummary.SetBinContent(fCurrentChannel,mean);
+      
+      fNoiseSummary.SetBinContent(fCurrentChannel,rms);
+      fCurrentChannel++;
+      
+      gDirectory->cd(GetStripPath(det, ring, sec, strip, kTRUE));
+      hChannel->GetXaxis()->SetRange(1,1024);
+      
+      hChannel->Write();
     }
   }
 }
@@ -241,30 +365,88 @@ void AliFMDPedestalDA::Analyse(UShort_t det,
 //_____________________________________________________________________
 void AliFMDPedestalDA::Terminate(TFile* diagFile) 
 {
+  // Called at the end of a job.  Fills in missing time-bins and
+  // closes output files
   if(fSaveHistograms) {
     diagFile->cd();
     
     fPedSummary.Write();
     fNoiseSummary.Write();
   }
+  AliFMDAltroMapping* map = AliFMDParameters::Instance()->GetAltroMap();
+  for (Int_t i = 0; i < 3; i++) { 
+    std::ofstream& out = (i == 0 ? fZSfileFMD1 : 
+                         i == 1 ? fZSfileFMD2 : 
+                         fZSfileFMD3);
+    if (out.is_open() && fSeenDetectors[i]) { 
+      FillinTimebins(out, map->Detector2DDL(i+1));
+    }
+    if (!fSeenDetectors[i]) {
+      TString n(Form("ddl%d.csv",3072+map->Detector2DDL(i+1)));
+      gSystem->Unlink(n.Data());
+    }
+  }
   
-  if(fZSfileFMD1.is_open()) { 
-    fZSfileFMD1.write("# EOF\n",6);
-    fZSfileFMD1.close();  }
-  if(fZSfileFMD2.is_open()) {
-    fZSfileFMD2.write("# EOF\n",6);
-    fZSfileFMD2.close(); }
-  if(fZSfileFMD3.is_open()) {
-    fZSfileFMD3.write("# EOF\n",6);
-    fZSfileFMD3.close(); }
-  
+}
+
+//_____________________________________________________________________
+void AliFMDPedestalDA::FillinTimebins(std::ofstream& out, UShort_t /*ddl*/)
+{
+  // 
+  // Fill missing timebins
+  //
+#if 0
+  unsigned short  boards[] = { 0x0, 0x1, 0x10, 0x11, 0xFFFF };
+  unsigned short* board    = boards;
+  while ((*boards) != 0xFFFF) { 
+    for (UShort_t altro = 0; altro < 3; altro++) { 
+      for (UShort_t channel = 0; channel < 16; channel++) { 
+       Int_t idx = HWIndex(ddl, *board, altro, channel);
+       if (idx < 0) { 
+         AliWarning(Form("Invalid index for %4d/0x%02x/0x%x/0x%x: %d", 
+                         ddl, *board, altro, channel, idx));
+         continue;
+       }
+       Short_t min = fMinTimebin[idx];
+       Short_t max = fMaxTimebin[idx];
+       
+       // Channel not seen at all. 
+       if (min > 1023 || max < 0) continue;
+
+       out << "# Extra timebins for 0x" << std::hex 
+           << board << ',' << altro << ',' << channel 
+           << " got time-bins " << min << " to " << max-1 
+           << std::dec << std::endl;
+       
+       for (UShort_t t = 15; t < min; t++) 
+         // Write a phony line 
+         out << board << "," << altro << "," << channel << "," 
+             << t << "," << 1023 << "," << 0 << std::endl;
+
+       for (UShort_t t = max; t < 1024; t++) 
+         // Write a phony line 
+         out << board << "," << altro << "," << channel << "," 
+             << t << "," << 1023 << "," << 0 << std::endl;
+      } // channel loop
+    } // altro loop
+  } // board loop
+  // Write trailer, and close 
+#endif
+  out.write("# EOF\n", 6);
+  out.close();
 }
 
 //_____________________________________________________________________
 void AliFMDPedestalDA::WriteHeaderToFile() 
 {
+  //
+  // Write headers to output files 
+  //
   AliFMDParameters* pars       = AliFMDParameters::Instance();
   fOutputFile.write(Form("# %s \n",pars->GetPedestalShuttleID()),13);
+  TDatime now;
+  fOutputFile << "# This file created from run # " << fRunno 
+             << " @ " << now.AsString() << std::endl;
   fOutputFile.write("# Detector, "
                    "Ring, "
                    "Sector, "
@@ -274,28 +456,19 @@ void AliFMDPedestalDA::WriteHeaderToFile()
                    "Mu, "
                    "Sigma, "
                    "Chi2/NDF \n", 71);
-  fZSfileFMD1.write("# FMD 1 pedestals \n",19);
-  fZSfileFMD1.write("# board, "
-                   "altro, "
-                   "channel, "
-                   "timebin, "
-                   "pedestal, "
-                   "noise \n", 51);
-  fZSfileFMD2.write("# FMD 2 pedestals \n",19);
-  fZSfileFMD2.write("# board, "
-                   "altro, "
-                   "channel, "
-                   "timebin, "
-                   "pedestal, "
-                   "noise \n", 51);
-  fZSfileFMD3.write("# FMD 3 pedestals \n",19);
-  fZSfileFMD3.write("# board, "
-                   "altro, "
-                   "channel, "
-                   "timebin, "
-                   "pedestal, "
-                   "noise \n", 51);
-  
+
+  std::ostream* zss[] = { &fZSfileFMD1, &fZSfileFMD2, &fZSfileFMD3, 0 };
+  for (size_t i = 0; i < 3; i++)  {
+    *(zss[i]) << "# FMD " << (i+1) << " pedestals \n"
+             << "# board, "
+             << "altro, "
+             << "channel, "
+             << "timebin, "
+             << "pedestal, "
+             << "noise\n";
+    *(zss[i]) << "# This file created from run # " << fRunno 
+             << " @ " << now.AsString() << std::endl;
+  }
 }
 
 //_____________________________________________________________________
@@ -303,14 +476,25 @@ TH1S* AliFMDPedestalDA::GetChannel(UShort_t det,
                                   Char_t   ring, 
                                   UShort_t sec, 
                                   UShort_t strip,
-                                  UInt_t    sample) 
+                                  UInt_t   sample) 
 {
-  UShort_t   iring     = (ring == 'O' ? 0 : 1);
-  TObjArray* detArray  = static_cast<TObjArray*>(fDetectorArray.At(det));
-  TObjArray* ringArray = static_cast<TObjArray*>(detArray->At(iring));
-  TObjArray* secArray  = static_cast<TObjArray*>(ringArray->At(sec));
-  TObjArray*        sampleArray = static_cast<TObjArray*>(secArray->At(strip));
-  TH1S*      hSample = static_cast<TH1S*>(sampleArray->At(sample));
+  // Get the histogram corresponding to a strip sample.
+  // 
+  // Parameters:
+  //     det    Detector
+  //     ring   Ring
+  //     sec    Sector
+  //     strip  Strip
+  //     sample Sample
+  //
+  // Return:
+  //     ADC spectra of a strip.
+  UShort_t   iring       = (ring == 'O' ? 0 : 1);
+  TObjArray* detArray    = static_cast<TObjArray*>(fDetectorArray.At(det));
+  TObjArray* ringArray   = static_cast<TObjArray*>(detArray->At(iring));
+  TObjArray* secArray    = static_cast<TObjArray*>(ringArray->At(sec));
+  TObjArray* sampleArray = static_cast<TObjArray*>(secArray->At(strip));
+  TH1S*      hSample     = static_cast<TH1S*>(sampleArray->At(sample));
   return hSample;
   
 }