]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - ITS/AliITStrackerSA.cxx
Change to take into account the different format of in subversion when compared...
[u/mrichter/AliRoot.git] / ITS / AliITStrackerSA.cxx
index cb274042115cb1928252626b98b3f1c2275842c2..ce836973c5d5237bc395be001cecf02ebd0f7996 100644 (file)
 #include <TObjArray.h>
 #include <TTree.h>
 
-#include "AliESD.h"
+#include "AliESDEvent.h"
 #include "AliESDVertex.h"
 #include "AliESDtrack.h"
 #include "AliITSVertexer.h"
 #include "AliITSclusterTable.h"
-#include "AliITSclusterV2.h"
-#include "AliITSgeom.h"
+#include "AliITSRecPoint.h"
+#include "AliITSgeomTGeo.h"
 #include "AliITStrackSA.h"
 #include "AliITStrackerSA.h"
+#include "AliITSReconstructor.h"
 #include "AliRun.h"
 
 ClassImp(AliITStrackerSA)
 
 //____________________________________________________________________________
-AliITStrackerSA::AliITStrackerSA():AliITStrackerMI(){
+AliITStrackerSA::AliITStrackerSA():AliITStrackerMI(),
+fPhiEstimate(0),
+fITSStandAlone(0),
+fLambdac(0),
+fPhic(0),
+fCoef1(0),
+fCoef2(0),
+fCoef3(0),
+fNloop(0),
+fPhiWin(0),
+fLambdaWin(0),
+fVert(0),
+fVertexer(0),
+fListOfTracks(0),
+fITSclusters(0),
+fSixPoints(0),
+fOuterStartLayer(0),
+fCluLayer(0),
+fCluCoord(0){
   // Default constructor
   Init();
  
 }
 //____________________________________________________________________________
-AliITStrackerSA::AliITStrackerSA(AliITSgeom *geom):AliITStrackerMI(geom) 
+AliITStrackerSA::AliITStrackerSA(const Char_t *geom):AliITStrackerMI(0),
+fPhiEstimate(0),
+fITSStandAlone(0),
+fLambdac(0),
+fPhic(0),
+fCoef1(0),
+fCoef2(0),
+fCoef3(0),
+fNloop(0),
+fPhiWin(0),
+fLambdaWin(0),
+fVert(0),
+fVertexer(0),
+fListOfTracks(0),
+fITSclusters(0),
+fSixPoints(0),
+fOuterStartLayer(0),
+fCluLayer(0),
+fCluCoord(0) 
 {
   // Standard constructor (Vertex is known and passed to this obj.)
+  if (geom) {
+    AliWarning("\"geom\" is actually a dummy argument !");
+  }
+
   Init();
   fVert = 0;
-  fGeom = geom;
  
 }
 
 //____________________________________________________________________________
-AliITStrackerSA::AliITStrackerSA(AliITSgeom *geom, AliESDVertex *vert):AliITStrackerMI(geom) 
+AliITStrackerSA::AliITStrackerSA(const Char_t *geom, AliESDVertex *vert):AliITStrackerMI(0),
+fPhiEstimate(0),
+fITSStandAlone(0),
+fLambdac(0),
+fPhic(0),
+fCoef1(0),
+fCoef2(0),
+fCoef3(0),
+fNloop(0),
+fPhiWin(0),
+fLambdaWin(0),
+fVert(vert),
+fVertexer(0),
+fListOfTracks(0),
+fITSclusters(0),
+fSixPoints(0),
+fOuterStartLayer(0),
+fCluLayer(0),
+fCluCoord(0)
 {
   // Standard constructor (Vertex is known and passed to this obj.)
+  if (geom) {
+    AliWarning("\"geom\" is actually a dummy argument !");
+  }
   Init();
-  fVert = vert;
-  fGeom = geom;
  
 }
 
 //____________________________________________________________________________
-AliITStrackerSA::AliITStrackerSA(AliITSgeom *geom, AliITSVertexer *vertexer):AliITStrackerMI(geom) 
+AliITStrackerSA::AliITStrackerSA(const Char_t *geom, AliITSVertexer *vertexer):AliITStrackerMI(0),
+fPhiEstimate(0),
+fITSStandAlone(0),
+fLambdac(0),
+fPhic(0),
+fCoef1(0),
+fCoef2(0),
+fCoef3(0),
+fNloop(0),
+fPhiWin(0),
+fLambdaWin(0),
+fVert(),
+fVertexer(vertexer),
+fListOfTracks(0),
+fITSclusters(0),
+fSixPoints(0),
+fOuterStartLayer(0),
+fCluLayer(0),
+fCluCoord(0)
 {
   // Standard constructor (Vertex is unknown - vertexer is passed to this obj)
+  if (geom) {
+    AliWarning("\"geom\" is actually a dummy argument !");
+  }
   Init();
   fVertexer = vertexer;
-  fGeom = geom;
  
 }
 
 //____________________________________________________________________________
-AliITStrackerSA::AliITStrackerSA(const AliITStrackerSA& tracker):AliITStrackerMI(){
+AliITStrackerSA::AliITStrackerSA(const AliITStrackerSA& tracker):AliITStrackerMI(),
+fPhiEstimate(tracker.fPhiEstimate),
+fITSStandAlone(tracker.fITSStandAlone),
+fLambdac(tracker.fLambdac),
+fPhic(tracker.fPhic),
+fCoef1(tracker.fCoef1),
+fCoef2(tracker.fCoef2),
+fCoef3(tracker.fCoef3),
+fNloop(tracker.fNloop),
+fPhiWin(tracker.fPhiWin),
+fLambdaWin(tracker.fLambdaWin),
+fVert(tracker.fVert),
+fVertexer(tracker.fVertexer),
+fListOfTracks(tracker.fListOfTracks),
+fITSclusters(tracker.fITSclusters),
+fSixPoints(tracker.fSixPoints),
+fOuterStartLayer(tracker.fOuterStartLayer),
+fCluLayer(tracker.fCluLayer),
+fCluCoord(tracker.fCluCoord) {
   // Copy constructor
-  fPhiEstimate = tracker.fPhiEstimate;
   for(Int_t i=0;i<2;i++){
     fPoint1[i]=tracker.fPoint1[i];
     fPoint2[i]=tracker.fPoint2[i];
     fPoint3[i]=tracker.fPoint3[i];
     fPointc[i]=tracker.fPointc[i];
   }
-  fLambdac = tracker.fLambdac;
-  fPhic = tracker.fPhic;
-  fCoef1 = tracker.fCoef1;
-  fCoef2 = tracker.fCoef2;
-  fCoef3 = tracker.fCoef3;
-  fNloop = tracker.fNloop;
-  fPhiWin = tracker.fPhiWin;
-  fLambdaWin = tracker.fLambdaWin;
   if(tracker.fVertexer && tracker.fVert){
     fVert = new AliESDVertex(*tracker.fVert);
   }
   else {
     fVert = tracker.fVert;
   }
-  fVertexer = tracker.fVertexer;
-  fGeom = tracker.fGeom;
-  fListOfTracks = tracker.fListOfTracks;
-  for(Int_t i=0;i<fGeom->GetNlayers();i++){
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
     fCluLayer[i] = tracker.fCluLayer[i];
     fCluCoord[i] = tracker.fCluCoord[i];
   } 
 }
 //______________________________________________________________________
-AliITStrackerSA& AliITStrackerSA::operator=(const AliITStrackerSA& /*source*/){
-    // Assignment operator. This is a function which is not allowed to be
-    // done.
-    Error("operator=","Assignment operator not allowed\n");
-    return *this; 
+AliITStrackerSA& AliITStrackerSA::operator=(const AliITStrackerSA& source){
+    // Assignment operator. 
+  this->~AliITStrackerSA();
+  new(this) AliITStrackerSA(source);
+  return *this;
 }
 
 //____________________________________________________________________________
@@ -132,8 +218,9 @@ AliITStrackerSA::~AliITStrackerSA(){
   if(fPhiWin)delete []fPhiWin;
   if(fLambdaWin)delete []fLambdaWin;
   fListOfTracks->Delete();
+  delete fListOfTracks;
   if(fCluLayer){
-    for(Int_t i=0;i<fGeom->GetNlayers();i++){
+    for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
       if(fCluLayer[i]){
        fCluLayer[i]->Delete();
        delete fCluLayer[i];
@@ -142,7 +229,7 @@ AliITStrackerSA::~AliITStrackerSA(){
     delete [] fCluLayer;
   }
   if(fCluCoord){
-    for(Int_t i=0;i<fGeom->GetNlayers();i++){
+    for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
       if(fCluCoord[i]){
        fCluCoord[i]->Delete();
        delete fCluCoord[i];
@@ -151,7 +238,24 @@ AliITStrackerSA::~AliITStrackerSA(){
     delete [] fCluCoord;
   }
   
-  fGeom = 0; 
+}
+
+//____________________________________________________________________________
+Int_t AliITStrackerSA::Clusters2Tracks(AliESDEvent *event){
+// This method is used to find and fit the tracks. By default the corresponding
+// method in the parent class is invoked. In this way a combined tracking
+// TPC+ITS is performed. If the flag fITSStandAlone is true, the tracking
+// is done in the ITS only. In the standard reconstruction chain this option
+// can be set via AliReconstruction::SetOption("ITS","onlyITS")
+  Int_t rc=0;
+  if(!fITSStandAlone){
+    rc=AliITStrackerMI::Clusters2Tracks(event);
+  }
+  else {
+    AliDebug(1,"Stand Alone flag set: doing tracking in ITS alone\n");
+  }
+  if(!rc) rc=FindTracks(event);
+  return rc;
 }
 
 //____________________________________________________________________________
@@ -168,10 +272,11 @@ void AliITStrackerSA::Init(){
     fPointc[1]=0;
     fVert = 0;
     fVertexer = 0;
-    fGeom = 0;
     SetWindowSizes();
     fITSclusters = 0;
     SetSixPoints();
+    SetOuterStartLayer(0);
+    SetSAFlag(kFALSE);
     fListOfTracks=new TObjArray(0,0);
     fCluLayer = 0;
     fCluCoord = 0;
@@ -194,7 +299,7 @@ void AliITStrackerSA::ResetForFinding(){
  
 
 //______________________________________________________________________
-Int_t AliITStrackerSA::FindTracks(AliESD* event){
+Int_t AliITStrackerSA::FindTracks(AliESDEvent* event){
 
 // Track finder using the ESD object
 
@@ -209,103 +314,106 @@ Int_t AliITStrackerSA::FindTracks(AliESD* event){
   
    
   //Reads event and mark clusters of traks already found, with flag kITSin
-   Int_t nentr=event->GetNumberOfTracks();
-   while (nentr--) {
-     AliESDtrack *track=event->GetTrack(nentr);
-     if (track->GetStatus()&AliESDtrack::kITSin==AliESDtrack::kITSin){
-       UInt_t idx[6];
-       Int_t ncl = track->GetITSclusters(idx);
-       for(Int_t k=0;k<ncl;k++){
-                AliITSclusterV2* cll = (AliITSclusterV2*)GetCluster(idx[k]);
-        cll->SetBit(kSAflag);
-       }
-     }
-   }
-
-   Double_t primaryVertex[3];
-   event->GetVertex()->GetXYZ(primaryVertex);
-   //Creates TClonesArray with clusters for each layer. The clusters already used
-   //by AliITStrackerMI are not considered
-   
-   Int_t nclusters[6]={0,0,0,0,0,0};
-   Int_t dmar[6]={0,0,0,0,0,0};
-   fCluLayer = new TClonesArray*[fGeom->GetNlayers()];
-   fCluCoord = new TClonesArray*[fGeom->GetNlayers()];
-
-   for(Int_t i=0;i<fGeom->GetNlayers();i++){
-     AliITSlayer &layer=fgLayers[i];
-     for(Int_t cli=0;cli<layer.GetNumberOfClusters();cli++){
-       AliITSclusterV2* cls = (AliITSclusterV2*)layer.GetCluster(cli);
-       if(cls->TestBit(kSAflag)==kTRUE) continue; //clusters used by TPC prol.
-       if(cls->GetQ()==0) continue; //fake clusters dead zones
-       nclusters[i]++;
-     }
-     dmar[i]=0;
-     fCluLayer[i] = new TClonesArray("AliITSclusterV2",nclusters[i]);
-     fCluCoord[i] = new TClonesArray("AliITSclusterTable",nclusters[i]);
-   }
-
-   
-   Int_t * firstmod = new Int_t[fGeom->GetNlayers()];
-   for(Int_t i=0;i<fGeom->GetNlayers();i++){
-     firstmod[i]=fGeom->GetModuleIndex(i+1,1,1);
-   }
-   
-   for(Int_t ilay=0;ilay<fGeom->GetNlayers();ilay++){
-     TClonesArray &clulay = *fCluLayer[ilay];
-     TClonesArray &clucoo = *fCluCoord[ilay];
-     AliITSlayer &layer=fgLayers[ilay];
-     for(Int_t cli=0;cli<layer.GetNumberOfClusters();cli++){
-       AliITSclusterV2* cls = (AliITSclusterV2*)layer.GetCluster(cli);
-       if(cls->TestBit(kSAflag)==kTRUE) continue;
-       if(cls->GetQ()==0) continue;
-       Double_t phi=0;Double_t lambda=0;
-       Float_t x=0;Float_t y=0;Float_t z=0;
-       Float_t sx=0;Float_t sy=0;Float_t sz=0;
-       Int_t module = cls->GetDetectorIndex()+firstmod[ilay];
-       GetCoorAngles(cls,module,phi,lambda,x,y,z,primaryVertex);
-       GetCoorErrors(cls,module,sx,sy,sz);
-       new (clulay[dmar[ilay]]) AliITSclusterV2(*cls);
-       new (clucoo[dmar[ilay]]) AliITSclusterTable(x,y,z,sx,sy,sz,phi,lambda,cli);
-       dmar[ilay]++;
-     }
-   }
-   
+  Int_t nentr=event->GetNumberOfTracks();
+  while (nentr--) {
+    AliESDtrack *track=event->GetTrack(nentr);
+    if (track->GetStatus()&AliESDtrack::kITSin==AliESDtrack::kITSin){
+      Int_t idx[12];
+      Int_t ncl = track->GetITSclusters(idx);
+      for(Int_t k=0;k<ncl;k++){
+       AliITSRecPoint* cll = (AliITSRecPoint*)GetCluster(idx[k]);
+       cll->SetBit(kSAflag);
+      }
+    }
+  }
   //Get primary vertex
+  Double_t primaryVertex[3];
+  event->GetVertex()->GetXYZ(primaryVertex);
+  //Creates TClonesArray with clusters for each layer. The clusters already used
+  //by AliITStrackerMI are not considered
+  Int_t nclusters[6]={0,0,0,0,0,0};
+  Int_t dmar[6]={0,0,0,0,0,0};
+  if (fCluLayer == 0) {
+    fCluLayer = new TClonesArray*[AliITSgeomTGeo::GetNLayers()];
+    fCluCoord = new TClonesArray*[AliITSgeomTGeo::GetNLayers()];
+    for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) {
+      fCluLayer[i]=0;
+      fCluCoord[i]=0;
+    }
+  }
+  Int_t * firstmod = new Int_t[AliITSgeomTGeo::GetNLayers()];
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
+    firstmod[i]=AliITSgeomTGeo::GetModuleIndex(i+1,1,1);
+    AliITSlayer &layer=fgLayers[i];
+    for(Int_t cli=0;cli<layer.GetNumberOfClusters();cli++){
+      AliITSRecPoint* cls = (AliITSRecPoint*)layer.GetCluster(cli);
+      if(cls->TestBit(kSAflag)==kTRUE) continue; //clusters used by TPC prol.
+      if(cls->GetQ()==0) continue; //fake clusters dead zones
+      nclusters[i]++;
+    }
+    dmar[i]=0;
+    delete fCluLayer[i];
+    fCluLayer[i] = new TClonesArray("AliITSRecPoint",nclusters[i]);
+    delete fCluCoord[i];
+    fCluCoord[i] = new TClonesArray("AliITSclusterTable",nclusters[i]);
+  }
 
-   Int_t ntrack=0;
-   //loop on the different windows
-   for(Int_t nloop=0;nloop<fNloop;nloop++){
-     for(Int_t ncl=0;ncl<fCluLayer[0]->GetEntries();ncl++){ //loop starting from layer 0
-       
-       ResetForFinding();
-       Int_t pflag=0;
-       
-       AliITSclusterV2* cl = (AliITSclusterV2*)fCluLayer[0]->At(ncl);
-
-       if(!cl) continue;
+  for(Int_t ilay=0;ilay<AliITSgeomTGeo::GetNLayers();ilay++){
+    TClonesArray &clulay = *fCluLayer[ilay];
+    TClonesArray &clucoo = *fCluCoord[ilay];
+    AliITSlayer &layer=fgLayers[ilay];
+    for(Int_t cli=0;cli<layer.GetNumberOfClusters();cli++){
+      AliITSRecPoint* cls = (AliITSRecPoint*)layer.GetCluster(cli);
+      if(cls->TestBit(kSAflag)==kTRUE) continue;
+      if(cls->GetQ()==0) continue;
+      Double_t phi=0;Double_t lambda=0;
+      Float_t x=0;Float_t y=0;Float_t z=0;
+      Float_t sx=0;Float_t sy=0;Float_t sz=0;
+      GetCoorAngles(cls,phi,lambda,x,y,z,primaryVertex);
+      GetCoorErrors(cls,sx,sy,sz);
+      new (clulay[dmar[ilay]]) AliITSRecPoint(*cls);
+      new (clucoo[dmar[ilay]]) AliITSclusterTable(x,y,z,sx,sy,sz,phi,lambda,cli);
+      dmar[ilay]++;
+    }
+  }
+   
+  Int_t minNPoints = (fSixPoints ? AliITSgeomTGeo::GetNLayers() : AliITSgeomTGeo::GetNLayers()-1);  
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) {
+    if(AliITSReconstructor::GetRecoParam()->GetLayersToSkip(i)) {
+      minNPoints--;
+    }
+  }
 
 
-       if (cl->GetQ()<=0) continue;
-       
-       AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(0,ncl); 
-       fPhic = arr->GetPhi();
-       fLambdac = arr->GetLambda();
-       if (TMath::Abs(fLambdac)>0.26*TMath::Pi()) continue;
-       fPhiEstimate = fPhic;
-       AliITStrackSA* trs = new AliITStrackSA(); 
-       fPoint1[0]=primaryVertex[0];
-       fPoint1[1]=primaryVertex[1];
-
-
-       fPoint2[0]=arr->GetX();
-       fPoint2[1]=arr->GetY();
-       Int_t * nn = new Int_t[fGeom->GetNlayers()];//counter for clusters on each layer
-       for(Int_t i=0;i<fGeom->GetNlayers();i++){ nn[i]=0;}
-       nn[0] = SearchClusters(0,fPhiWin[nloop],fLambdaWin[nloop],trs,primaryVertex[2],pflag);
-       
-       nn[1] = SearchClusters(1,fPhiWin[nloop],fLambdaWin[nloop],trs,primaryVertex[2],pflag);
+  Int_t ntrack=0;
+  //loop on the different windows
+  Int_t * nn = new Int_t[AliITSgeomTGeo::GetNLayers()];//counter for clusters on each layer
+  for(Int_t nloop=0;nloop<fNloop;nloop++){
+    for(Int_t ncl=0;ncl<fCluLayer[0]->GetEntries();ncl++){ //loop starting from layer 0
+      
+      ResetForFinding();
+      Int_t pflag=0;
+      
+      AliITSRecPoint* cl = (AliITSRecPoint*)fCluLayer[0]->At(ncl);
+      
+      if(!cl) continue;
+      if (cl->GetQ()<=0) continue;
+      
+      AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(0,ncl); 
+      fPhic = arr->GetPhi();
+      fLambdac = arr->GetLambda();
+      if (TMath::Abs(fLambdac)>0.26*TMath::Pi()) continue;
+      fPhiEstimate = fPhic;
+      AliITStrackSA* trs = new AliITStrackSA(); 
+      fPoint1[0]=primaryVertex[0];
+      fPoint1[1]=primaryVertex[1];
+      
+      
+      fPoint2[0]=arr->GetX();
+      fPoint2[1]=arr->GetY();
+      for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){ nn[i]=0;}
+      nn[0] = SearchClusters(0,fPhiWin[nloop],fLambdaWin[nloop],trs,primaryVertex[2],pflag);
+      nn[1] = SearchClusters(1,fPhiWin[nloop],fLambdaWin[nloop],trs,primaryVertex[2],pflag);
       if(nn[1]>0){
         pflag=1;
         fPoint3[0] = fPointc[0];
@@ -330,305 +438,392 @@ Int_t AliITStrackerSA::FindTracks(AliESD* event){
           
 
       Int_t layOK=0;
-      Int_t numberofpoints;
-      if(fSixPoints) numberofpoints=6;  //check of the candidate track
-      else numberofpoints=5;           //if track is good (with the required number        
-      for(Int_t nnp=0;nnp<fGeom->GetNlayers();nnp++){    //of points) it is written on file
+      //check of the candidate track
+      for(Int_t nnp=0;nnp<AliITSgeomTGeo::GetNLayers();nnp++) {
         if(nn[nnp]!=0) layOK+=1;
       }
-      if(layOK>=numberofpoints){
 
-        AliITStrackV2* tr2 = FitTrack(trs,primaryVertex);
-       
-        if(tr2==0) continue;
+      if(layOK>=minNPoints){
+       AliITStrackV2* tr2 = 0;
+       tr2 = FitTrack(trs,primaryVertex);
+       if(!tr2) continue;
 
        AliESDtrack outtrack;
        outtrack.UpdateTrackParams(tr2,AliESDtrack::kITSin);
        event->AddTrack(&outtrack);
        ntrack++;
-       
       }
-       
-
       delete trs;
-      delete[] nn;
-      
      }//end loop on clusters of layer1
-    
      //end loop2
-   }
-   
-   //if 5/6 points are required, second loop starting 
-   //from second layer, to find tracks with point of 
-   //layer 1 missing
-   
-   if(!fSixPoints){
-     //   counter for clusters on each layer  
-     Int_t * nn = new Int_t[fGeom->GetNlayers()-1];      
-     for(Int_t nloop=0;nloop<fNloop;nloop++){
-       Int_t ncl2=fCluLayer[1]->GetEntries();
-       while(ncl2--){ //loop starting from layer 2
-        ResetForFinding();
-        Int_t pflag=0;
-        AliITSclusterV2* cl = (AliITSclusterV2*)fCluLayer[1]->At(ncl2);
-        
-        if(!cl) continue;
-        AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(1,ncl2);
-        fPhic = arr->GetPhi();
-        fLambdac = arr->GetLambda();
-        fPhiEstimate = fPhic;
-         
-        AliITStrackSA* trs = new AliITStrackSA(); 
-        fPoint1[0]=primaryVertex[0];
-        fPoint1[1]=primaryVertex[1];
-        
-        fPoint2[0]=arr->GetX();
-        fPoint2[1]=arr->GetY();
-        for(Int_t kk=0;kk<fGeom->GetNlayers()-1;kk++)nn[kk] = 0;
-        nn[0] = SearchClusters(1,fPhiWin[nloop],fLambdaWin[nloop],
-                                  trs,primaryVertex[2],pflag);
-        nn[1] = SearchClusters(2,fPhiWin[nloop],fLambdaWin[nloop],
-                                  trs,primaryVertex[2],pflag);
-        if(nn[1]!=0){
-          pflag=1;
-          fPoint3[0]=fPointc[0];
-          fPoint3[1]=fPointc[1];
-        }
-        nn[2]= SearchClusters(3,fPhiWin[nloop],fLambdaWin[nloop],
-                                  trs,primaryVertex[2],pflag);
-        if(nn[2]!=0){
-          pflag=1;
-          UpdatePoints();
-        }
-        nn[3]= SearchClusters(4,fPhiWin[nloop],fLambdaWin[nloop],
-                                  trs,primaryVertex[2],pflag);
-        if(nn[3]!=0){
-          pflag=1;
-          UpdatePoints();
-        }
-        nn[4]=SearchClusters(5,fPhiWin[nloop],fLambdaWin[nloop],
-                                  trs,primaryVertex[2],pflag);
-
-        Int_t fl=0;
-        for(Int_t nnp=0;nnp<fGeom->GetNlayers()-1;nnp++){
-          if(nn[nnp]!=0) fl+=1;
-        }
-        if(fl>=5){  // 5/6       
-          AliITStrackV2* tr2 = FitTrack(trs,primaryVertex);
-          if(tr2==0){
-            continue;
-          }
-          
-          AliESDtrack outtrack;
-          outtrack.UpdateTrackParams(tr2,AliESDtrack::kITSin);
-          event->AddTrack(&outtrack);
-          ntrack++;
-
-        }   
+  }
+
+  delete[] nn;
+
+
+  minNPoints--;
+
+  //if 5/6 points are required, second loop starting 
+  //from second layer (SPD2), to find tracks with point of 
+  //layer 1 missing   
+  if(!fSixPoints) {
+    //printf("looking from SPD2\n");
+    //   counter for clusters on each layer  
+    Int_t * nn = new Int_t[AliITSgeomTGeo::GetNLayers()-1];      
+    for(Int_t nloop=0;nloop<fNloop;nloop++){
+      Int_t ncl2=fCluLayer[1]->GetEntries();
+      while(ncl2--){ //loop starting from layer 2
+       ResetForFinding();
+       Int_t pflag=0;
+       AliITSRecPoint* cl = (AliITSRecPoint*)fCluLayer[1]->At(ncl2);
+       
+       if(!cl) continue;
+       AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(1,ncl2);
+       fPhic = arr->GetPhi();
+       fLambdac = arr->GetLambda();
+       fPhiEstimate = fPhic;
+       
+       AliITStrackSA* trs = new AliITStrackSA(); 
+       fPoint1[0]=primaryVertex[0];
+       fPoint1[1]=primaryVertex[1];
+       
+       fPoint2[0]=arr->GetX();
+       fPoint2[1]=arr->GetY();
+       for(Int_t kk=0;kk<AliITSgeomTGeo::GetNLayers()-1;kk++)nn[kk] = 0;
+       nn[0] = SearchClusters(1,fPhiWin[nloop],fLambdaWin[nloop],
+                              trs,primaryVertex[2],pflag);
+       nn[1] = SearchClusters(2,fPhiWin[nloop],fLambdaWin[nloop],
+                              trs,primaryVertex[2],pflag);
+       if(nn[1]!=0){
+         pflag=1;
+         fPoint3[0]=fPointc[0];
+         fPoint3[1]=fPointc[1];
+       }
+       nn[2]= SearchClusters(3,fPhiWin[nloop],fLambdaWin[nloop],
+                             trs,primaryVertex[2],pflag);
+       if(nn[2]!=0){
+         pflag=1;
+         UpdatePoints();
+       }
+       nn[3]= SearchClusters(4,fPhiWin[nloop],fLambdaWin[nloop],
+                             trs,primaryVertex[2],pflag);
+       if(nn[3]!=0){
+         pflag=1;
+         UpdatePoints();
+       }
+       nn[4]=SearchClusters(5,fPhiWin[nloop],fLambdaWin[nloop],
+                            trs,primaryVertex[2],pflag);
+       
+       Int_t fl=0;
+       for(Int_t nnp=0;nnp<AliITSgeomTGeo::GetNLayers()-1;nnp++){
+         if(nn[nnp]!=0) fl+=1;
+       }
+       if(fl>=minNPoints){  // 5/6       
+         AliITStrackV2* tr2 = 0;
+         tr2 = FitTrack(trs,primaryVertex);
+         if(!tr2) continue;
+         
+         AliESDtrack outtrack;
+         outtrack.UpdateTrackParams(tr2,AliESDtrack::kITSin);
+         event->AddTrack(&outtrack);
+         ntrack++;
+         
+       }   
        
-       
         delete trs;
       }//end loop on clusters of layer2
-     }
-   
+    }
+    
     delete [] nn;
-  }  //end opt="5/6"  
-   
+  } //end opt="5/6"  
+
+  // search for tracks starting from SPD2, SDD1, SDD2, SSD2
+  // for cosmics (A. Dainese 31.07.07)
+  if(fOuterStartLayer>0) {
+    for(Int_t innLay=1; innLay<=fOuterStartLayer; innLay++) {
+      //printf("Searching from layer %d outward\n",innLay);
+      minNPoints=AliITSgeomTGeo::GetNLayers()-innLay;
+      for(Int_t i=innLay;i<AliITSgeomTGeo::GetNLayers();i++) 
+       if(AliITSReconstructor::GetRecoParam()->GetLayersToSkip(i)) 
+         minNPoints--;
+      //   counter for clusters on each layer  
+      Int_t * nn = new Int_t[AliITSgeomTGeo::GetNLayers()-innLay];      
+      for(Int_t nloop=0;nloop<fNloop;nloop++){
+       Int_t nclInnLay=fCluLayer[innLay]->GetEntries();
+       while(nclInnLay--){ //loop starting from layer innLay
+         ResetForFinding();
+         Int_t pflag=0;
+         AliITSRecPoint* cl = (AliITSRecPoint*)fCluLayer[innLay]->At(nclInnLay);
+         
+         if(!cl) continue;
+         AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(innLay,nclInnLay);
+         fPhic = arr->GetPhi();
+         fLambdac = arr->GetLambda();
+         fPhiEstimate = fPhic;
+         
+         AliITStrackSA* trs = new AliITStrackSA(); 
+         fPoint1[0]=primaryVertex[0];
+         fPoint1[1]=primaryVertex[1];
+         fPoint2[0]=arr->GetX();
+         fPoint2[1]=arr->GetY();
+         
+         Int_t kk;
+         for(kk=0;kk<AliITSgeomTGeo::GetNLayers()-innLay;kk++) nn[kk] = 0;
+         
+         kk=0;
+         nn[kk] = SearchClusters(innLay,fPhiWin[nloop],fLambdaWin[nloop],
+                                 trs,primaryVertex[2],pflag);
+         for(Int_t nextLay=innLay+1; nextLay<AliITSgeomTGeo::GetNLayers(); nextLay++) {
+           kk++;
+           nn[kk] = SearchClusters(nextLay,fPhiWin[nloop],fLambdaWin[nloop],
+                                   trs,primaryVertex[2],pflag);
+           if(nn[kk]!=0){
+             pflag=1;
+             if(kk==1) {
+               fPoint3[0]=fPointc[0];
+               fPoint3[1]=fPointc[1];
+             } else {
+               UpdatePoints();
+             }
+           }
+         }
+         
+         Int_t fl=0;
+         for(Int_t nnp=0;nnp<AliITSgeomTGeo::GetNLayers()-innLay;nnp++){
+           if(nn[nnp]!=0) fl+=1;
+         }
+         if(fl>=minNPoints){ 
+           AliITStrackV2* tr2 = 0;
+           tr2 = FitTrack(trs,primaryVertex);
+           if(!tr2) continue;
+           
+           
+           AliESDtrack outtrack;
+           outtrack.UpdateTrackParams(tr2,AliESDtrack::kITSin);
+           event->AddTrack(&outtrack);
+           ntrack++;
+           
+         }   
+         
+         delete trs;
+       }//end loop on clusters of innLay
+      } //end loop on window sizes
+      
+      delete [] nn;
+    } //end loop on innLay
+  } //end if(fOuterStartLayer>0)
+  
+  
   delete [] firstmod;
   Info("FindTracks","Number of found tracks: %d",event->GetNumberOfTracks());
   return 0;
 
 }
  
-
-
-
-
 //________________________________________________________________________
 
-AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVertex){
-  //fit of the found track
+AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVertex) {
+  //fit of the found track (most general case, also <6 points, layers missing)
+  // A.Dainese 16.11.07 
 
   
-  Int_t * firstmod = new Int_t[fGeom->GetNlayers()];
-  for(Int_t i=0;i<fGeom->GetNlayers();i++){
-    firstmod[i]=fGeom->GetModuleIndex(i+1,1,1);
-  }  
+  Int_t * firstmod = new Int_t[AliITSgeomTGeo::GetNLayers()];
+  TObjArray** listlayer = new TObjArray*[AliITSgeomTGeo::GetNLayers()];
+  Int_t ** clind=new Int_t*[AliITSgeomTGeo::GetNLayers()];
+  Int_t ** clmark=new Int_t*[AliITSgeomTGeo::GetNLayers()];
+  Int_t * nnn = new Int_t[AliITSgeomTGeo::GetNLayers()];
+  Int_t * kkk = new Int_t[AliITSgeomTGeo::GetNLayers()];
 
-  Int_t nclusters = tr->GetNumberOfClustersSA();
-  TObjArray** listlayer = new TObjArray*[fGeom->GetNlayers()];
-  for(Int_t i=0;i<fGeom->GetNlayers();i++){
+  const Int_t maxclu=AliITStrackSA::GetMaxNumberOfClusters();
+
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) {
+    firstmod[i]=AliITSgeomTGeo::GetModuleIndex(i+1,1,1);
     listlayer[i] = new TObjArray(0,0);
+    nnn[i]=0;
+    kkk[i]=0;
+    clind[i]=new Int_t[maxclu]; 
+    clmark[i]=new Int_t[maxclu];
+    for(Int_t j=0;j<maxclu; j++){
+      clind[i][j]=0;
+      clmark[i][j]=0;
+    }
   }
-
-  TArrayI clind0(20);
-  TArrayI clind1(20);
-  TArrayI clind2(20);
-  TArrayI clind3(20);
-  TArrayI clind4(20);
-  TArrayI clind5(20);
-
-  TArrayI mark0(20);
-  TArrayI mark1(20);
-  TArrayI mark2(20);
-  TArrayI mark3(20);
-  TArrayI mark4(20);
-  TArrayI mark5(20);
-
-
-  Int_t * nnn = new Int_t[fGeom->GetNlayers()];
-  Int_t * kkk = new Int_t[fGeom->GetNlayers()];
-  for(Int_t i=0;i<fGeom->GetNlayers();i++) {nnn[i]=0;kkk[i]=0;}
   
+
+  Int_t nclusters = tr->GetNumberOfClustersSA();
   for(Int_t ncl=0;ncl<nclusters;ncl++){
     Int_t index = tr->GetClusterIndexSA(ncl); 
-    AliITSclusterV2* cl = (AliITSclusterV2*)GetCluster(index);
+    AliITSRecPoint* cl = (AliITSRecPoint*)GetCluster(index);
     if(cl->TestBit(kSAflag)==kTRUE) cl->ResetBit(kSAflag);
     Int_t lay = (index & 0xf0000000) >> 28;
-    if(lay==0) { listlayer[0]->AddLast(cl); clind0[nnn[0]]=index;nnn[0]++;}
-    if(lay==1) { listlayer[1]->AddLast(cl); clind1[nnn[1]]=index;nnn[1]++;}
-    if(lay==2) { listlayer[2]->AddLast(cl); clind2[nnn[2]]=index;nnn[2]++;}
-    if(lay==3) { listlayer[3]->AddLast(cl); clind3[nnn[3]]=index;nnn[3]++;}
-    if(lay==4) { listlayer[4]->AddLast(cl); clind4[nnn[4]]=index;nnn[4]++;}
-    if(lay==5) { listlayer[5]->AddLast(cl); clind5[nnn[5]]=index;nnn[5]++;}    
+    listlayer[lay]->AddLast(cl); 
+    Int_t ind=nnn[lay];
+    clind[lay][ind]=index;
   }
   delete [] nnn;
 
-  for(Int_t nlay=0;nlay<fGeom->GetNlayers();nlay++){
+  for(Int_t nlay=0;nlay<AliITSgeomTGeo::GetNLayers();nlay++){
     for(Int_t ncl=0;ncl<tr->GetNumberOfMarked(nlay);ncl++){
       Int_t mark = tr->GetClusterMark(nlay,ncl);
-      if(nlay==0) { mark0[kkk[0]]=mark;kkk[0]++;}
-      if(nlay==1) { mark1[kkk[1]]=mark;kkk[1]++;}
-      if(nlay==2) { mark2[kkk[2]]=mark;kkk[2]++;}
-      if(nlay==3) { mark3[kkk[3]]=mark;kkk[3]++;}
-      if(nlay==4) { mark4[kkk[4]]=mark;kkk[4]++;}
-      if(nlay==5) { mark5[kkk[5]]=mark;kkk[5]++;}
-
+      Int_t ind=kkk[nlay];
+      clmark[nlay][ind]=mark;
     }
   }
 
   delete [] kkk;
 
-  Int_t * end = new Int_t[fGeom->GetNlayers()];
-  for(Int_t i=0;i<fGeom->GetNlayers();i++){
-    if(listlayer[i]->GetEntries()==0) end[i]=1;
-    else end[i]=listlayer[i]->GetEntries();
+  Int_t firstLay=-1,secondLay=-1;
+  Int_t * end = new Int_t[AliITSgeomTGeo::GetNLayers()];
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) {
+    if(listlayer[i]->GetEntries()==0) {
+      end[i]=1;
+    } else {
+      end[i]=listlayer[i]->GetEntries();
+      if(firstLay==-1) {
+       firstLay=i;
+      } else if(secondLay==-1) {
+       secondLay=i;
+      }
+    }
   }
 
   TClonesArray* listSA = new TClonesArray("AliITStrackSA");
   TClonesArray &tri = *listSA;
   Int_t nlist=0;
 
-  if(end[0]==0) end[0]=1; //for tracks with cluster on layer 0 missing
-  for(Int_t l1=0;l1<end[0];l1++){//loop on layer 1
-    AliITSclusterV2* cl0 = (AliITSclusterV2*)listlayer[0]->At(l1); 
-    Double_t x1,y1,z1,sx1,sy1,sz1;
-    Double_t x2,y2,z2,sx2,sy2,sz2;
-    AliITSclusterV2* p1=0;
-    AliITSclusterV2* p2=0;
-    Int_t index1=clind0[l1];
-    Int_t index2=0;
-    Int_t mrk1 = mark0[l1];
-    Int_t mrk2 = 0;
-    Int_t lay1=0;
-    Int_t lay2=1;
-    Int_t module1=-1;
-    for(Int_t l2=0;l2<end[1];l2++){//loop on layer 2
-      AliITSclusterV2* cl1 = (AliITSclusterV2*)listlayer[1]->At(l2); 
-      index2=clind1[l2];
-      mrk2 = mark1[l2];
-      for(Int_t l3=0;l3<end[2];l3++){  //loop on layer 3
-        AliITSclusterV2* cl2 = (AliITSclusterV2*)listlayer[2]->At(l3);
-
-        if(cl0==0 && cl1!=0) {
-          p2 = cl2;index1=clind2[l3];mrk1=mark2[l3];lay1=2;
-          p1=cl1;
-          module1 = p1->GetDetectorIndex()+firstmod[1]; 
-        }
-        if(cl0!=0 && cl1==0){
-          p1=cl0;
-          p2=cl2;index2=clind2[l3];mrk2=mark2[l3];lay2=2;
-         module1 = p1->GetDetectorIndex()+firstmod[0];
-        }
-        if(cl0!=0 && cl1!=0){
-          p1=cl0;
-          p2=cl1;
-         module1 = p1->GetDetectorIndex()+firstmod[0];
-        }
-       
-       Int_t cln1=mrk1;
-       Int_t cln2=mrk2;
-       AliITSclusterTable* arr = (AliITSclusterTable*)GetClusterCoord(lay1,cln1);
-       AliITSclusterTable* arr1= (AliITSclusterTable*)GetClusterCoord(lay2,cln2);
-       x1 = arr->GetX();
-       x2 = arr1->GetX();
-       y1 = arr->GetY();
-       y2 = arr1->GetY();
-       z1 = arr->GetZ();
-       z2 = arr1->GetZ();
-       sx1 = arr->GetSx();
-       sx2 = arr1->GetSx();
-       sy1 = arr->GetSy();
-       sy2 = arr1->GetSy();
-       sz1 = arr->GetSz();
-       sz2 = arr1->GetSz();
-       
-       Int_t layer,ladder,detector;
-       fGeom->GetModuleId(module1,layer,ladder,detector);
-        Float_t yclu1 = p1->GetY();
-        Float_t zclu1 = p1->GetZ();
-        Double_t cv=Curvature(primaryVertex[0],primaryVertex[1],x1,y1,x2,y2);
-        
-       Double_t tgl2 = (z2-z1)/TMath::Sqrt((x2-x1)*(x2-x1)+(y2-y1)*(y2-y1));
-       Double_t phi2 = TMath::ATan2((y2-y1),(x2-x1));
-
-        for(Int_t l4=0;l4<end[3];l4++){ //loop on layer 4   
-          AliITSclusterV2* cl3 = (AliITSclusterV2*)listlayer[3]->At(l4);
-          for(Int_t l5=0;l5<end[4];l5++){ //loop on layer 5
-            AliITSclusterV2* cl4 = (AliITSclusterV2*)listlayer[4]->At(l5);
-            for(Int_t l6=0;l6<end[5];l6++){ //loop on layer 6  
-              AliITSclusterV2* cl5 = (AliITSclusterV2*)listlayer[5]->At(l6);
-              AliITStrackSA* trac = new AliITStrackSA(fGeom,layer,ladder,detector,yclu1,zclu1,phi2,tgl2,cv,1);
+  for(Int_t l0=0;l0<end[0];l0++){ //loop on layer 1
+    AliITSRecPoint* cl0 = (AliITSRecPoint*)listlayer[0]->At(l0); 
+    for(Int_t l1=0;l1<end[1];l1++){ //loop on layer 2
+      AliITSRecPoint* cl1 = (AliITSRecPoint*)listlayer[1]->At(l1); 
+      for(Int_t l2=0;l2<end[2];l2++){  //loop on layer 3
+        AliITSRecPoint* cl2 = (AliITSRecPoint*)listlayer[2]->At(l2);
+        for(Int_t l3=0;l3<end[3];l3++){ //loop on layer 4   
+          AliITSRecPoint* cl3 = (AliITSRecPoint*)listlayer[3]->At(l3);
+          for(Int_t l4=0;l4<end[4];l4++){ //loop on layer 5
+            AliITSRecPoint* cl4 = (AliITSRecPoint*)listlayer[4]->At(l4);
+            for(Int_t l5=0;l5<end[5];l5++){ //loop on layer 6  
+              AliITSRecPoint* cl5 = (AliITSRecPoint*)listlayer[5]->At(l5);
+
+
+             Double_t x1,y1,z1,sx1,sy1,sz1;
+             Double_t x2,y2,z2,sx2,sy2,sz2;
+             AliITSRecPoint* p1=0;
+             AliITSRecPoint* p2=0;
+             Int_t index1=0,index2=0;
+             Int_t mrk1=0,mrk2=0;
+
+             switch(firstLay) {
+             case 0:
+               p1=cl0;
+               index1=clind[0][l0];mrk1=clmark[0][l0];
+               break;
+             case 1:
+               p1=cl1;
+               index1=clind[1][l1];mrk1=clmark[1][l1];
+               break;
+             case 2:
+               p1=cl2;
+               index1=clind[2][l2];mrk1=clmark[2][l2];
+               break;
+             case 3:
+               p1=cl3;
+               index1=clind[3][l3];mrk1=clmark[3][l3];
+               break;
+             case 4:
+               p1=cl4;
+               index1=clind[4][l4];mrk1=clmark[4][l4];
+               break;
+             }
+
+             switch(secondLay) {
+             case 1:
+               p2=cl1;
+               index2=clind[1][l1];mrk2=clmark[1][l1];
+               break;
+             case 2:
+               p2=cl2;
+               index2=clind[2][l2];mrk2=clmark[2][l2];
+               break;
+             case 3:
+               p2=cl3;
+               index2=clind[3][l3];mrk2=clmark[3][l3];
+               break;
+             case 4:
+               p2=cl4;
+               index2=clind[4][l4];mrk2=clmark[4][l4];
+               break;
+             case 5:
+               p2=cl5;
+               index2=clind[5][l5];mrk2=clmark[5][l5];
+               break;
+             }
+
+             Int_t module1 = p1->GetDetectorIndex()+firstmod[firstLay]; 
+             
+             Int_t cln1=mrk1;
+             Int_t cln2=mrk2;
+             AliITSclusterTable* arr1 = (AliITSclusterTable*)GetClusterCoord(firstLay,cln1);
+             AliITSclusterTable* arr2 = (AliITSclusterTable*)GetClusterCoord(secondLay,cln2);
+             x1 = arr1->GetX();
+             x2 = arr2->GetX();
+             y1 = arr1->GetY();
+             y2 = arr2->GetY();
+             z1 = arr1->GetZ();
+             z2 = arr2->GetZ();
+             sx1 = arr1->GetSx();
+             sx2 = arr2->GetSx();
+             sy1 = arr1->GetSy();
+             sy2 = arr2->GetSy();
+             sz1 = arr1->GetSz();
+             sz2 = arr2->GetSz();
+             
+             Int_t layer,ladder,detector;
+             AliITSgeomTGeo::GetModuleId(module1,layer,ladder,detector);
+             Float_t yclu1 = p1->GetY();
+             Float_t zclu1 = p1->GetZ();
+             Double_t cv=Curvature(primaryVertex[0],primaryVertex[1],x1,y1,x2,y2);        
+             Double_t tgl2 = (z2-z1)/TMath::Sqrt((x2-x1)*(x2-x1)+(y2-y1)*(y2-y1));
+             Double_t phi2 = TMath::ATan2((y2-y1),(x2-x1));
+              AliITStrackSA* trac = new AliITStrackSA(layer,ladder,detector,yclu1,zclu1,phi2,tgl2,cv,1);
                               
               if(cl5!=0) {
-               trac->AddClusterV2(5,(clind5[l6] & 0x0fffffff)>>0);
-               trac->AddClusterMark(5,mark5[l6]);
+               trac->AddClusterV2(5,(clind[5][l5] & 0x0fffffff)>>0);
+               trac->AddClusterMark(5,clmark[5][l5]);
              }
               if(cl4!=0){
-               trac->AddClusterV2(4,(clind4[l5] & 0x0fffffff)>>0);
-               trac->AddClusterMark(4,mark4[l5]);
+               trac->AddClusterV2(4,(clind[4][l4] & 0x0fffffff)>>0);
+               trac->AddClusterMark(4,clmark[4][l4]);
              }
               if(cl3!=0){
-               trac->AddClusterV2(3,(clind3[l4] & 0x0fffffff)>>0);
-               trac->AddClusterMark(3,mark3[l4]);
+               trac->AddClusterV2(3,(clind[3][l3] & 0x0fffffff)>>0);
+               trac->AddClusterMark(3,clmark[3][l3]);
              }
               if(cl2!=0){
-               trac->AddClusterV2(2,(clind2[l3] & 0x0fffffff)>>0);
-               trac->AddClusterMark(2,mark2[l3]);
+               trac->AddClusterV2(2,(clind[2][l2] & 0x0fffffff)>>0);
+               trac->AddClusterMark(2,clmark[2][l2]);
              }
               if(cl1!=0){
-               trac->AddClusterV2(1,(clind1[l2] & 0x0fffffff)>>0);
-               trac->AddClusterMark(1,mark1[l2]);
+               trac->AddClusterV2(1,(clind[1][l1] & 0x0fffffff)>>0);
+               trac->AddClusterMark(1,clmark[1][l1]);
              }
               if(cl0!=0){
-               trac->AddClusterV2(0,(clind0[l1] & 0x0fffffff)>>0);
-               trac->AddClusterMark(0,mark0[l1]);
+               trac->AddClusterV2(0,(clind[0][l0] & 0x0fffffff)>>0);
+               trac->AddClusterMark(0,clmark[0][l0]);
              }
-              //fit with Kalman filter using AliITStrackerMI::RefitAt()
-          
 
-              AliITStrackMI* ot = new AliITStrackSA(*trac);
+
+              //fit with Kalman filter using AliITStrackerMI::RefitAt()
+             AliITStrackMI* ot = new AliITStrackSA(*trac);
               
-              ot->ResetCovariance();
+              ot->ResetCovariance(10.);
               ot->ResetClusters();
               
-              if(RefitAt(49.,ot,trac)){ //fit from layer 1 to layer 6
+              if(RefitAt(AliITSRecoParam::GetrInsideITSscreen(),ot,trac)){ //fit from layer 1 to layer 6
                 AliITStrackMI *otrack2 = new AliITStrackMI(*ot);
-                otrack2->ResetCovariance(); 
+                otrack2->ResetCovariance(10.); 
                 otrack2->ResetClusters();
                 //fit from layer 6 to layer 1
-                if(RefitAt(3.7,otrack2,ot)) {
+                if(RefitAt(AliITSRecoParam::GetrInsideSPD1(),otrack2,ot)) {
                  fListOfTracks->AddLast(otrack2);
                  new (tri[nlist]) AliITStrackSA(*trac);
                  nlist++;
@@ -642,8 +837,7 @@ AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVert
               delete trac;
             }//end loop layer 6
           }//end loop layer 5
-        }//end loop layer 4
-        
+        }//end loop layer 4        
       }//end loop layer 3
     }//end loop layer 2 
   }//end loop layer 1
@@ -654,10 +848,16 @@ AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVert
 
   Int_t dim=fListOfTracks->GetEntries();
   if(dim==0){
-    for(Int_t i=0;i<fGeom->GetNlayers();i++){
+    for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
       delete listlayer[i];
+      delete clind[i];
+      delete clmark[i];
     }
     delete [] listlayer;
+    delete [] clind;
+    delete [] clmark;
+    listSA->Delete();
+    delete listSA;
     delete [] firstmod;
     return 0;
   }
@@ -667,54 +867,53 @@ AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVert
   AliITStrackSA* trsa = (AliITStrackSA*)listSA->At(lowchi2);
  
   if(otrack==0) {
-    for(Int_t i=0;i<fGeom->GetNlayers();i++){
+    for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
       delete listlayer[i];
+      delete clind[i];
+      delete clmark[i];
     }
     delete [] listlayer; 
+    delete [] clind;
+    delete [] clmark;
+    listSA->Delete();
+    delete listSA;
     delete [] firstmod;
+    delete [] clind;
+    delete [] clmark;
     return 0;
   }
-  Int_t * indexc = new Int_t[fGeom->GetNlayers()];
-  for(Int_t i=0;i<fGeom->GetNlayers();i++) indexc[i]=0;
+  Int_t * indexc = new Int_t[AliITSgeomTGeo::GetNLayers()];
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) indexc[i]=0;
   for(Int_t nind=0;nind<otrack->GetNumberOfClusters();nind++){
     indexc[nind] = otrack->GetClusterIndex(nind);
   }      
-  AliITSclusterV2* cl0 = (AliITSclusterV2*)GetCluster(indexc[0]);
-  AliITSclusterV2* cl1 = (AliITSclusterV2*)GetCluster(indexc[1]);     
-  AliITSclusterV2* cl2 = (AliITSclusterV2*)GetCluster(indexc[2]);     
-  AliITSclusterV2* cl3 = (AliITSclusterV2*)GetCluster(indexc[3]);
-  AliITSclusterV2* cl4 = (AliITSclusterV2*)GetCluster(indexc[4]);
-  Int_t labl[3]={-1,-1,-1};
-  if(otrack->GetNumberOfClusters()==fGeom->GetNlayers()){
-    AliITSclusterV2* cl5 = (AliITSclusterV2*)GetCluster(indexc[5]);
-    labl[0]=cl5->GetLabel(0);
-    labl[1]=cl5->GetLabel(1);
-    labl[2]=cl5->GetLabel(2);
+  Int_t labl[6][3];
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++) {
+    if(i<otrack->GetNumberOfClusters()) {
+      AliITSRecPoint* cl = (AliITSRecPoint*)GetCluster(indexc[i]);
+      labl[i][0]=cl->GetLabel(0);
+      labl[i][1]=cl->GetLabel(1);
+      labl[i][2]=cl->GetLabel(2);
+    } else {
+      labl[i][0]=-1;
+      labl[i][1]=-1;
+      labl[i][2]=-1;
+    }
   }
   delete [] indexc;
-  if(otrack->GetNumberOfClusters()==(fGeom->GetNlayers()-1)){
-    labl[0]=-1;
-    labl[1]=-1;
-    labl[2]=-1;
-  }
-  Int_t numberofpoints;
-  if(fSixPoints) numberofpoints=6;
-  else numberofpoints=5;
+
   CookLabel(otrack,0.); //MI change - to see fake ratio
-  Int_t label =  Label(cl0->GetLabel(0),cl1->GetLabel(0), 
-                       cl2->GetLabel(0),cl3->GetLabel(0),
-                       cl4->GetLabel(0),labl[0],
-                       cl0->GetLabel(1),cl1->GetLabel(1),
-                       cl2->GetLabel(1),cl3->GetLabel(1),
-                       cl4->GetLabel(1),labl[1],
-                       cl0->GetLabel(2),cl1->GetLabel(2),
-                       cl2->GetLabel(2),cl3->GetLabel(2),
-                       cl4->GetLabel(2),labl[2],numberofpoints);
+  Int_t label=FindLabel(labl[0][0],labl[1][0],labl[2][0],labl[3][0],labl[4][0],labl[5][0]);
+  Int_t lflag=0;
+  for(Int_t i=0;i<otrack->GetNumberOfClusters();i++)
+    if(labl[i][0]==label || labl[i][1]==label || labl[i][2]==label) lflag++;
   
+  if(lflag<otrack->GetNumberOfClusters()) label = -label;
   otrack->SetLabel(label);  
-  //remove clusters of found track
 
-  for(Int_t nlay=0;nlay<fGeom->GetNlayers();nlay++){
+  //remove clusters of found track
+  for(Int_t nlay=0;nlay<AliITSgeomTGeo::GetNLayers();nlay++){
     for(Int_t cln=0;cln<trsa->GetNumberOfMarked(nlay);cln++){
       Int_t index = trsa->GetClusterMark(nlay,cln);
       fCluLayer[nlay]->RemoveAt(index);
@@ -725,11 +924,15 @@ AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVert
   listSA->Delete();
   delete listSA;
 
-  for(Int_t i=0;i<fGeom->GetNlayers();i++){
+  for(Int_t i=0;i<AliITSgeomTGeo::GetNLayers();i++){
     delete listlayer[i];
+    delete clind[i];
+    delete clmark[i];
   }
   delete [] listlayer; 
   delete [] firstmod;
+  delete [] clind;
+  delete [] clmark;
   return otrack;
 
 }
@@ -739,23 +942,26 @@ AliITStrackV2* AliITStrackerSA::FitTrack(AliITStrackSA* tr,Double_t *primaryVert
 //_______________________________________________________
 Int_t AliITStrackerSA::SearchClusters(Int_t layer,Double_t phiwindow,Double_t lambdawindow, AliITStrackSA* trs,Double_t /*zvertex*/,Int_t pflag){
   //function used to to find the clusters associated to the track
+
+  if(AliITSReconstructor::GetRecoParam()->GetLayersToSkip(layer)) return 0;
+
   Int_t nc=0;
   AliITSlayer &lay = fgLayers[layer];
   Double_t r=lay.GetR();
-   if(pflag==1){      
+  if(pflag==1){      
     Float_t cx1,cx2,cy1,cy2;
     FindEquation(fPoint1[0],fPoint1[1],fPoint2[0],fPoint2[1],fPoint3[0],fPoint3[1],fCoef1,fCoef2,fCoef3);
     if (FindIntersection(fCoef1,fCoef2,fCoef3,-r*r,cx1,cy1,cx2,cy2)==0)
        return 0;
-    Double_t fi1=TMath::ATan2(cy1,cx1);
-    Double_t fi2=TMath::ATan2(cy2,cx2);
+    Double_t fi1=TMath::ATan2(cy1-fPoint1[1],cx1-fPoint1[0]);
+    Double_t fi2=TMath::ATan2(cy2-fPoint1[1],cx2-fPoint1[0]);
     fPhiEstimate=ChoosePoint(fi1,fi2,fPhic);
   }
 
  
   Int_t ncl = fCluLayer[layer]->GetEntries();
   for (Int_t index=0; index<ncl; index++) {
-    AliITSclusterV2 *c = (AliITSclusterV2*)fCluLayer[layer]->At(index);
+    AliITSRecPoint *c = (AliITSRecPoint*)fCluLayer[layer]->At(index);
     if (!c) continue;
     if (c->GetQ()<=0) continue;
     
@@ -872,13 +1078,13 @@ Double_t AliITStrackerSA::ChoosePoint(Double_t p1, Double_t p2, Double_t pp){
 
 //_________________________________________________________________
 Int_t AliITStrackerSA::FindTrackLowChiSquare(TObjArray* tracklist, Int_t dim) const {
-  // returns track with lowes chi square  
+  // returns track with lowers chi square  
   if(dim==1){
     //AliITStrackV2* trk = (AliITStrackV2*)tracklist->At(0);
     //return trk;
     return 0;
   }
-  //if(dim==0) return 0;
+  if(dim==0) return 0;
   Double_t * chi2 = new Double_t[dim];
   Int_t * index = new Int_t[dim];
   for(Int_t i=0;i<dim;i++){
@@ -902,23 +1108,23 @@ Int_t AliITStrackerSA::FindTrackLowChiSquare(TObjArray* tracklist, Int_t dim) co
     }
     w++;
   }
-
+  Int_t tmp = index[dim-1];
   delete [] chi2;
   delete [] index;
-  return index[dim-1];
+  return tmp;
 }
 
 //__________________________________________________________
-Int_t AliITStrackerSA::FindLabel(Int_t l1, Int_t l2, Int_t l3, Int_t l4, Int_t l5, Int_t l6){
+Int_t AliITStrackerSA::FindLabel(Int_t l0, Int_t l1, Int_t l2, Int_t l3, Int_t l4, Int_t l5){
 
   //function used to determine the track label
   
-  Int_t lb[6] = {l1,l2,l3,l4,l5,l6};
+  Int_t lb[6] = {l0,l1,l2,l3,l4,l5};
   Int_t aa[6]={1,1,1,1,1,1};
   Int_t ff=0; 
   Int_t ll=0;
   Int_t k=0;Int_t w=0;Int_t num=6;
-  if(lb[5]==-1) num=5;
+  for(Int_t i=5;i>=0;i--) if(lb[i]==-1) num=i;
   
   while(k<num){
   
@@ -930,11 +1136,11 @@ Int_t AliITStrackerSA::FindLabel(Int_t l1, Int_t l2, Int_t l3, Int_t l4, Int_t l
         aa[i]=0;
       }
     }
-  k++;
+    k++;
   }
 
   while(w<num){
-  
     for(Int_t j=0;j<6;j++){
       if(aa[w]<aa[j]){
       ff=aa[w];
@@ -945,15 +1151,16 @@ Int_t AliITStrackerSA::FindLabel(Int_t l1, Int_t l2, Int_t l3, Int_t l4, Int_t l
       lb[j]=ll;
      }
     }
-  w++;
+    w++;
   }
-  if(num==6)  return lb[5];
-  else return lb[4];
+  
+  if(num<1) return -1; 
+  return lb[num-1];
 }
 
 //_____________________________________________________________________________
 Int_t AliITStrackerSA::Label(Int_t gl1, Int_t gl2, Int_t gl3, Int_t gl4, Int_t gl5, Int_t gl6,Int_t gl7, Int_t gl8, Int_t gl9, Int_t gl10,Int_t gl11,
-Int_t gl12, Int_t gl13, Int_t gl14,Int_t gl15, Int_t gl16, Int_t gl17, Int_t gl18, Int_t numberofpoints){
+Int_t gl12, Int_t gl13, Int_t gl14,Int_t gl15, Int_t gl16, Int_t gl17, Int_t gl18, Int_t minNPoints){
 
  
   //function used to assign label to the found track. If track is fake, the label is negative
@@ -969,7 +1176,7 @@ Int_t gl12, Int_t gl13, Int_t gl14,Int_t gl15, Int_t gl16, Int_t gl17, Int_t gl1
     if(lb0[i]==ll || lb1[i]==ll || lb2[i]==ll) lflag+=1;
   }
 
-  if(lflag>=numberofpoints) return ll;
+  if(lflag>=minNPoints) return ll;
   else return -ll;
 
   
@@ -1007,19 +1214,21 @@ void AliITStrackerSA::SetWindowSizes(Int_t n, Double_t *phi, Double_t *lam){
     
     fPhiWin = new Double_t[fNloop];
     fLambdaWin = new Double_t[fNloop];
-   
+
+    Double_t factor=AliITSReconstructor::GetRecoParam()->GetFactorSAWindowSizes(); // possibility to enlarge windows for cosmics reco with large misalignments (A.Dainese)
+  
     for(Int_t k=0;k<fNloop;k++){
-      fPhiWin[k]=phid[k];
-      fLambdaWin[k]=lambdad[k];
+      fPhiWin[k]=phid[k]*factor;
+      fLambdaWin[k]=lambdad[k]*factor;
     }
   
   }
 
 }
 //_______________________________________________________________________
-void AliITStrackerSA::GetCoorAngles(AliITSclusterV2* cl,Int_t module,Double_t &phi,Double_t &lambda, Float_t &x, Float_t &y,Float_t &z,Double_t* vertex){
+void AliITStrackerSA::GetCoorAngles(AliITSRecPoint* cl,Double_t &phi,Double_t &lambda, Float_t &x, Float_t &y,Float_t &z,Double_t* vertex){
   //Returns values of phi (azimuthal) and lambda angles for a given cluster
-  
+/*  
   Double_t rot[9];     fGeom->GetRotMatrix(module,rot);
   Int_t lay,lad,det; fGeom->GetModuleId(module,lay,lad,det);
   Float_t tx,ty,tz;  fGeom->GetTrans(lay,lad,det,tx,ty,tz);     
@@ -1031,30 +1240,44 @@ void AliITStrackerSA::GetCoorAngles(AliITSclusterV2* cl,Int_t module,Double_t &p
   Float_t cp=TMath::Cos(phi1), sp=TMath::Sin(phi1);
   Float_t r=tx*cp+ty*sp;
 
-  x= r*cp - cl->GetY()*sp;
+  xyz= r*cp - cl->GetY()*sp;
   y= r*sp + cl->GetY()*cp;
   z=cl->GetZ();
-  
-  phi=TMath::ATan2(y,x);
+*/
+  Float_t xyz[3];
+  cl->GetGlobalXYZ(xyz);
+  x=xyz[0];
+  y=xyz[1];
+  z=xyz[2];
+  phi=TMath::ATan2(y-vertex[1],x-vertex[0]);
   lambda=TMath::ATan2(z-vertex[2],TMath::Sqrt((x-vertex[0])*(x-vertex[0])+(y-vertex[1])*(y-vertex[1])));
 }
 
 //________________________________________________________________________
-void AliITStrackerSA::GetCoorErrors(AliITSclusterV2* cl, Int_t module,Float_t &sx,Float_t &sy, Float_t &sz){
-
-  //returns x,y,z of cluster in global coordinates
+void AliITStrackerSA::GetCoorErrors(AliITSRecPoint* cl,Float_t &sx,Float_t &sy, Float_t &sz){
 
+  //returns sigmax, y, z of cluster in global coordinates
+/*
   Double_t rot[9];     fGeom->GetRotMatrix(module,rot);
-  Int_t lay,lad,det; fGeom->GetModuleId(module,lay,lad,det);
+  Int_t lay,lad,det; 
+  AliITSgeomTGeo::GetModuleId(module,lay,lad,det);
  
   Double_t alpha=TMath::ATan2(rot[1],rot[0])+TMath::Pi();
   Double_t phi=TMath::Pi()/2+alpha;
   if (lay==1) phi+=TMath::Pi();
 
   Float_t cp=TMath::Cos(phi), sp=TMath::Sin(phi);
-
+*/
+  Float_t covm[6];
+  cl->GetGlobalCov(covm);
+  sx=TMath::Sqrt(covm[0]);
+  sy=TMath::Sqrt(covm[3]);
+  sz=TMath::Sqrt(covm[5]);
+/*
   sx = TMath::Sqrt(sp*sp*cl->GetSigmaY2());
   sy = TMath::Sqrt(cp*cp*cl->GetSigmaY2());
   sz = TMath::Sqrt(cl->GetSigmaZ2());
-
+*/
 }
+