]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - TRD/AliTRDclusterizerV1.cxx
Removing obsolete files from build system
[u/mrichter/AliRoot.git] / TRD / AliTRDclusterizerV1.cxx
index 289bd2562d6556222b23c5f49bc7d6f32445d221..9c91861400c20666eeac91512ae2f2eb76c5f814 100644 (file)
@@ -1,3 +1,4 @@
+
 /**************************************************************************
  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
  *                                                                        *
  * provided "as is" without express or implied warranty.                  *
  **************************************************************************/
 
-/*
-$Log$
-Revision 1.14  2001/11/14 10:50:45  cblume
-Changes in digits IO. Add merging of summable digits
-
-Revision 1.13  2001/05/28 17:07:58  hristov
-Last minute changes; ExB correction in AliTRDclusterizerV1; taking into account of material in G10 TEC frames and material between TEC planes (C.Blume,S.Sedykh)
-
-Revision 1.12  2001/05/21 17:42:58  hristov
-Constant casted to avoid the ambiguity
-
-Revision 1.11  2001/05/21 16:45:47  hristov
-Last minute changes (C.Blume)
-
-Revision 1.10  2001/05/07 08:06:44  cblume
-Speedup of the code. Create only AliTRDcluster
-
-Revision 1.9  2000/11/01 14:53:20  cblume
-Merge with TRD-develop
-
-Revision 1.1.4.5  2000/10/15 23:40:01  cblume
-Remove AliTRDconst
-
-Revision 1.1.4.4  2000/10/06 16:49:46  cblume
-Made Getters const
-
-Revision 1.1.4.3  2000/10/04 16:34:58  cblume
-Replace include files by forward declarations
-
-Revision 1.1.4.2  2000/09/22 14:49:49  cblume
-Adapted to tracking code
-
-Revision 1.8  2000/10/02 21:28:19  fca
-Removal of useless dependecies via forward declarations
-
-Revision 1.7  2000/06/27 13:08:50  cblume
-Changed to Copy(TObject &A) to appease the HP-compiler
-
-Revision 1.6  2000/06/09 11:10:07  cblume
-Compiler warnings and coding conventions, next round
-
-Revision 1.5  2000/06/08 18:32:58  cblume
-Make code compliant to coding conventions
-
-Revision 1.4  2000/06/07 16:27:01  cblume
-Try to remove compiler warnings on Sun and HP
-
-Revision 1.3  2000/05/08 16:17:27  cblume
-Merge TRD-develop
-
-Revision 1.1.4.1  2000/05/08 15:09:01  cblume
-Introduce AliTRDdigitsManager
-
-Revision 1.1  2000/02/28 18:58:54  cblume
-Add new TRD classes
-
-*/
+/* $Id$ */
 
 ///////////////////////////////////////////////////////////////////////////////
 //                                                                           //
-// TRD cluster finder for the slow simulator. 
+// TRD cluster finder                                                        //
 //                                                                           //
 ///////////////////////////////////////////////////////////////////////////////
 
@@ -82,58 +27,62 @@ Add new TRD classes
 #include <TH1.h>
 #include <TFile.h>
 
-#include "AliRun.h"
+#include "AliRunLoader.h"
+#include "AliLoader.h"
+#include "AliRawReader.h"
+#include "AliLog.h"
+#include "AliAlignObj.h"
 
-#include "AliTRD.h"
 #include "AliTRDclusterizerV1.h"
-#include "AliTRDmatrix.h"
 #include "AliTRDgeometry.h"
-#include "AliTRDdigitizer.h"
 #include "AliTRDdataArrayF.h"
 #include "AliTRDdataArrayI.h"
 #include "AliTRDdigitsManager.h"
+#include "AliTRDpadPlane.h"
+#include "AliTRDrawData.h"
+#include "AliTRDcalibDB.h"
+#include "AliTRDSimParam.h"
+#include "AliTRDRecParam.h"
+#include "AliTRDcluster.h"
+
+#include "Cal/AliTRDCalROC.h"
+#include "Cal/AliTRDCalDet.h"
 
 ClassImp(AliTRDclusterizerV1)
 
 //_____________________________________________________________________________
-AliTRDclusterizerV1::AliTRDclusterizerV1():AliTRDclusterizer()
+AliTRDclusterizerV1::AliTRDclusterizerV1()
+  :AliTRDclusterizer()
+  ,fDigitsManager(NULL)
 {
   //
   // AliTRDclusterizerV1 default constructor
   //
 
-  fDigitsManager = NULL;
-
-  fClusMaxThresh = 0;
-  fClusSigThresh = 0;
-
-  fUseLUT        = kFALSE;
-
 }
 
 //_____________________________________________________________________________
-AliTRDclusterizerV1::AliTRDclusterizerV1(const Text_t* name, const Text_t* title)
-                    :AliTRDclusterizer(name,title)
+AliTRDclusterizerV1::AliTRDclusterizerV1(const Text_t *name, const Text_t *title)
+  :AliTRDclusterizer(name,title)
+  ,fDigitsManager(new AliTRDdigitsManager())
 {
   //
-  // AliTRDclusterizerV1 default constructor
+  // AliTRDclusterizerV1 constructor
   //
 
-  fDigitsManager = new AliTRDdigitsManager();
-
-  Init();
+  fDigitsManager->CreateArrays();
 
 }
 
 //_____________________________________________________________________________
 AliTRDclusterizerV1::AliTRDclusterizerV1(const AliTRDclusterizerV1 &c)
+  :AliTRDclusterizer(c)
+  ,fDigitsManager(NULL)
 {
   //
   // AliTRDclusterizerV1 copy constructor
   //
 
-  ((AliTRDclusterizerV1 &) c).Copy(*this);
-
 }
 
 //_____________________________________________________________________________
@@ -163,235 +112,226 @@ AliTRDclusterizerV1 &AliTRDclusterizerV1::operator=(const AliTRDclusterizerV1 &c
 }
 
 //_____________________________________________________________________________
-void AliTRDclusterizerV1::Copy(TObject &c)
+void AliTRDclusterizerV1::Copy(TObject &c) const
 {
   //
   // Copy function
   //
 
-  ((AliTRDclusterizerV1 &) c).fUseLUT        = fUseLUT;
-  ((AliTRDclusterizerV1 &) c).fClusMaxThresh = fClusMaxThresh;
-  ((AliTRDclusterizerV1 &) c).fClusSigThresh = fClusSigThresh;
-  ((AliTRDclusterizerV1 &) c).fDigitsManager = NULL;
-  for (Int_t ilut = 0; ilut < kNlut; ilut++) {
-    ((AliTRDclusterizerV1 &) c).fLUT[ilut] = fLUT[ilut];
-  }
+  ((AliTRDclusterizerV1 &) c).fDigitsManager = 0;
 
   AliTRDclusterizer::Copy(c);
 
 }
 
 //_____________________________________________________________________________
-void AliTRDclusterizerV1::Init()
+Bool_t AliTRDclusterizerV1::ReadDigits()
 {
   //
-  // Initializes the cluster finder
+  // Reads the digits arrays from the input aliroot file
   //
 
-  // The default parameter for the clustering
-  fClusMaxThresh = 3;
-  fClusSigThresh = 1;
-
-  // Use the lookup table for the position determination
-  fUseLUT        = kTRUE;
-
-  // The lookup table from Bogdan
-  Float_t lut[128] = {  
-    0.0068,  0.0198,  0.0318,  0.0432,  0.0538,  0.0642,  0.0742,  0.0838,
-    0.0932,  0.1023,  0.1107,  0.1187,  0.1268,  0.1347,  0.1423,  0.1493,  
-    0.1562,  0.1632,  0.1698,  0.1762,  0.1828,  0.1887,  0.1947,  0.2002,  
-    0.2062,  0.2118,  0.2173,  0.2222,  0.2278,  0.2327,  0.2377,  0.2428,  
-    0.2473,  0.2522,  0.2567,  0.2612,  0.2657,  0.2697,  0.2743,  0.2783,  
-    0.2822,  0.2862,  0.2903,  0.2943,  0.2982,  0.3018,  0.3058,  0.3092,  
-    0.3128,  0.3167,  0.3203,  0.3237,  0.3268,  0.3302,  0.3338,  0.3368,  
-    0.3402,  0.3433,  0.3462,  0.3492,  0.3528,  0.3557,  0.3587,  0.3613,  
-    0.3643,  0.3672,  0.3702,  0.3728,  0.3758,  0.3783,  0.3812,  0.3837,  
-    0.3862,  0.3887,  0.3918,  0.3943,  0.3968,  0.3993,  0.4017,  0.4042,  
-    0.4067,  0.4087,  0.4112,  0.4137,  0.4157,  0.4182,  0.4207,  0.4227,  
-    0.4252,  0.4272,  0.4293,  0.4317,  0.4338,  0.4358,  0.4383,  0.4403,  
-    0.4423,  0.4442,  0.4462,  0.4482,  0.4502,  0.4523,  0.4543,  0.4563,  
-    0.4582,  0.4602,  0.4622,  0.4638,  0.4658,  0.4678,  0.4697,  0.4712,  
-    0.4733,  0.4753,  0.4767,  0.4787,  0.4803,  0.4823,  0.4837,  0.4857,  
-    0.4873,  0.4888,  0.4908,  0.4922,  0.4942,  0.4958,  0.4972,  0.4988  
-  }; 
-  for (Int_t ilut = 0; ilut < kNlut; ilut++) {
-    fLUT[ilut] = lut[ilut];
+  if (!fRunLoader) {
+    AliError("No run loader available");
+    return kFALSE;
   }
 
-  fDigitsManager->CreateArrays();
+  AliLoader* loader = fRunLoader->GetLoader("TRDLoader");
+  if (!loader->TreeD()) {
+    loader->LoadDigits();
+  }
+
+  // Read in the digit arrays
+  return (fDigitsManager->ReadDigits(loader->TreeD()));
 
 }
 
 //_____________________________________________________________________________
-Bool_t AliTRDclusterizerV1::ReadDigits()
+Bool_t AliTRDclusterizerV1::ReadDigits(TTree *digitsTree)
 {
   //
-  // Reads the digits arrays from the input aliroot file
+  // Reads the digits arrays from the input tree
   //
 
-  if (!fInputFile) {
-    printf("AliTRDclusterizerV1::ReadDigits -- ");
-    printf("No input file open\n");
-    return kFALSE;
-  }
-
-  fDigitsManager->Open(fInputFile->GetName());
-
   // Read in the digit arrays
-  return (fDigitsManager->ReadDigits());  
+  return (fDigitsManager->ReadDigits(digitsTree));
 
 }
 
 //_____________________________________________________________________________
-Bool_t AliTRDclusterizerV1::MakeClusters()
+Bool_t AliTRDclusterizerV1::ReadDigits(AliRawReader *rawReader)
 {
   //
-  // Generates the cluster.
+  // Reads the digits arrays from the ddl file
   //
 
-  Int_t row, col, time;
-
-  if (fTRD->IsVersion() != 1) {
-    printf("AliTRDclusterizerV1::MakeCluster -- ");
-    printf("TRD must be version 1 (slow simulator).\n");
-    return kFALSE; 
-  }
+  AliTRDrawData raw;
+  fDigitsManager = raw.Raw2Digits(rawReader);
 
-  // Get the geometry
-  AliTRDgeometry *geo = fTRD->GetGeometry();
+  return kTRUE;
 
-  Float_t timeBinSize = geo->GetTimeBinSize();
-  // Half of ampl.region
-  const Float_t kAmWidth = AliTRDgeometry::AmThick()/2.; 
+}
 
-  AliTRDdigitizer *digitizer = (AliTRDdigitizer*) fInputFile->Get("TRDdigitizer");
-  Float_t omegaTau = digitizer->GetOmegaTau();
-  if (fVerbose > 0) {
-    printf("AliTRDclusterizerV1::MakeCluster -- ");
-    printf("OmegaTau = %f \n",omegaTau);
-    printf("AliTRDclusterizerV1::MakeCluster -- ");
-    printf("Start creating clusters.\n");
-  } 
+//_____________________________________________________________________________
+Bool_t AliTRDclusterizerV1::MakeClusters()
+{
+  //
+  // Generates the cluster.
+  //
 
-  AliTRDdataArrayI *digits;
-  AliTRDdataArrayI *track0;
-  AliTRDdataArrayI *track1;
-  AliTRDdataArrayI *track2; 
+  Int_t row   = 0;
+  Int_t col   = 0;
+  Int_t time  = 0;
+  Int_t icham = 0;
+  Int_t iplan = 0;
+  Int_t isect = 0;
+  Int_t iPad  = 0;
+    
+  AliTRDdataArrayI *digitsIn;
+  AliTRDdataArrayI *tracksIn;
+
+  AliTRDgeometry geo;
+
+  AliTRDcalibDB  *calibration    = AliTRDcalibDB::Instance();
+  if (!calibration) {
+    AliFatal("No AliTRDcalibDB instance available\n");
+    return kFALSE;  
+  }
+  
+  AliTRDSimParam *simParam       = AliTRDSimParam::Instance();
+  if (!simParam) {
+    AliError("No AliTRDSimParam instance available\n");
+    return kFALSE;  
+  }
+  
+  AliTRDRecParam *recParam       = AliTRDRecParam::Instance();
+  if (!recParam) {
+    AliError("No AliTRDRecParam instance available\n");
+    return kFALSE;  
+  }
 
+  // ADC thresholds
+  Float_t ADCthreshold   = simParam->GetADCthreshold();
   // Threshold value for the maximum
-  Int_t maxThresh = fClusMaxThresh;   
+  Float_t maxThresh      = recParam->GetClusMaxThresh();
   // Threshold value for the digit signal
-  Int_t sigThresh = fClusSigThresh;   
+  Float_t sigThresh      = recParam->GetClusSigThresh();
+
+  // Detector wise calibration object for t0
+  const AliTRDCalDet *calT0Det         = calibration->GetT0Det();
+  // Detector wise calibration object for the gain factors
+  const AliTRDCalDet *calGainFactorDet = calibration->GetGainFactorDet();
 
   // Iteration limit for unfolding procedure
   const Float_t kEpsilon = 0.01;             
-
   const Int_t   kNclus   = 3;  
   const Int_t   kNsig    = 5;
-  const Int_t   kNtrack  = 3 * kNclus;
+  const Int_t   kNdict   = AliTRDdigitsManager::kNDict;
+  const Int_t   kNtrack  = kNdict * kNclus;
 
-  // For the LUT
-  const Float_t kLUTmin  = 0.106113;
-  const Float_t kLUTmax  = 0.995415;
+  Int_t    iUnfold       = 0;  
+  Double_t ratioLeft     = 1.0;
+  Double_t ratioRight    = 1.0;
 
-  Int_t   iType          = 0;
-  Int_t   iUnfold        = 0;
+  Int_t    iClusterROC   = 0;
 
-  Float_t ratioLeft      = 1.0;
-  Float_t ratioRight     = 1.0;
+  Double_t padSignal[kNsig];   
+  Double_t clusterSignal[kNclus];
+  Double_t clusterPads[kNclus];   
 
-  Float_t padSignal[kNsig];   
-  Float_t clusterSignal[kNclus];
-  Float_t clusterPads[kNclus];   
-  Int_t   clusterDigit[kNclus];
-  Int_t   clusterTracks[kNtrack];   
+  Int_t    chamBeg    = 0;
+  Int_t    chamEnd    = AliTRDgeometry::Ncham();
+  Int_t    planBeg    = 0;
+  Int_t    planEnd    = AliTRDgeometry::Nplan();
+  Int_t    sectBeg    = 0;
+  Int_t    sectEnd    = AliTRDgeometry::Nsect();
+  Int_t    nTimeTotal = calibration->GetNumberOfTimeBins();
 
-  Int_t chamBeg = 0;
-  Int_t chamEnd = AliTRDgeometry::Ncham();
-  if (fTRD->GetSensChamber()  >= 0) {
-    chamBeg = fTRD->GetSensChamber();
-    chamEnd = chamBeg + 1;
-  }
-  Int_t planBeg = 0;
-  Int_t planEnd = AliTRDgeometry::Nplan();
-  if (fTRD->GetSensPlane()    >= 0) {
-    planBeg = fTRD->GetSensPlane();
-    planEnd = planBeg + 1;
-  }
-  Int_t sectBeg = 0;
-  Int_t sectEnd = AliTRDgeometry::Nsect();
+  AliDebug(1,Form("Number of Time Bins = %d.\n",nTimeTotal));
 
   // Start clustering in every chamber
-  for (Int_t icham = chamBeg; icham < chamEnd; icham++) {
-    for (Int_t iplan = planBeg; iplan < planEnd; iplan++) {
-      for (Int_t isect = sectBeg; isect < sectEnd; isect++) {
-
-        if (fTRD->GetSensSector() >= 0) {
-          Int_t sens1 = fTRD->GetSensSector();
-          Int_t sens2 = sens1 + fTRD->GetSensSectorRange();
-          sens2 -= ((Int_t) (sens2 / AliTRDgeometry::Nsect())) 
-                 * AliTRDgeometry::Nsect();
-          if (sens1 < sens2) {
-            if ((isect < sens1) || (isect >= sens2)) continue;
-         }
-          else {
-            if ((isect < sens1) && (isect >= sens2)) continue;
-         }
+  for (icham = chamBeg; icham < chamEnd; icham++) {
+    for (iplan = planBeg; iplan < planEnd; iplan++) {
+      for (isect = sectBeg; isect < sectEnd; isect++) {
+
+        Int_t    idet    = geo.GetDetector(iplan,icham,isect);
+        Int_t    ilayer  = AliGeomManager::kTRD1 + iplan;
+        Int_t    imodule = icham + chamEnd * isect;
+        UShort_t volid   = AliGeomManager::LayerToVolUID(ilayer,imodule); 
+
+        // Get the digits
+        digitsIn = fDigitsManager->GetDigits(idet);
+       // This is to take care of switched off super modules
+        if (digitsIn->GetNtime() == 0) {
+          continue;
        }
+        digitsIn->Expand();
+        AliTRDdataArrayI *tracksTmp = fDigitsManager->GetDictionary(idet,0);
+        tracksTmp->Expand();
+
+       Int_t nRowMax = geo.GetRowMax(iplan,icham,isect);
+       Int_t nColMax = geo.GetColMax(iplan);
+
+        AliTRDpadPlane *padPlane = geo.GetPadPlane(iplan,icham);
 
-        Int_t idet = geo->GetDetector(iplan,icham,isect);
+       // Calibration object with pad wise values for t0
+        AliTRDCalROC *calT0ROC              = calibration->GetT0ROC(idet);
+       // Calibration object with pad wise values for the gain factors
+        AliTRDCalROC *calGainFactorROC      = calibration->GetGainFactorROC(idet);
+        // Calibration value for chamber wise t0
+        Float_t       calT0DetValue         = calT0Det->GetValue(idet);
+        // Calibration value for chamber wise gain factor
+        Float_t       calGainFactorDetValue = calGainFactorDet->GetValue(idet);
 
         Int_t nClusters      = 0;
-        Int_t nClusters2pad  = 0;
-        Int_t nClusters3pad  = 0;
-        Int_t nClusters4pad  = 0;
-        Int_t nClusters5pad  = 0;
-        Int_t nClustersLarge = 0;
-
-        if (fVerbose > 0) {
-          printf("AliTRDclusterizerV1::MakeCluster -- ");
-          printf("Analyzing chamber %d, plane %d, sector %d.\n"
-                ,icham,iplan,isect);
-       }
 
-        Int_t nRowMax     = geo->GetRowMax(iplan,icham,isect);
-        Int_t nColMax     = geo->GetColMax(iplan);
-        Int_t nTimeBefore = geo->GetTimeBefore();
-        Int_t nTimeTotal  = geo->GetTimeTotal();  
+       // Apply the gain and the tail cancelation via digital filter
+        AliTRDdataArrayF *digitsOut = new AliTRDdataArrayF(digitsIn->GetNrow()
+                                                          ,digitsIn->GetNcol()
+                                                          ,digitsIn->GetNtime()); 
+        Transform(digitsIn
+                 ,digitsOut
+                 ,nRowMax,nColMax,nTimeTotal
+                 ,ADCthreshold
+                 ,calGainFactorROC
+                 ,calGainFactorDetValue);
 
-        // Get the digits
-        digits = fDigitsManager->GetDigits(idet);
-        digits->Expand();
-        track0 = fDigitsManager->GetDictionary(idet,0);
-        track0->Expand();
-        track1 = fDigitsManager->GetDictionary(idet,1);
-        track1->Expand();
-        track2 = fDigitsManager->GetDictionary(idet,2); 
-        track2->Expand();
+       // Input digits are not needed any more
+        digitsIn->Compress(1,0);
 
         // Loop through the chamber and find the maxima 
         for ( row = 0;  row <  nRowMax;    row++) {
-          for ( col = 2;  col <  nColMax;    col++) {
+         for ( col = 2;  col <  nColMax;    col++) {
             for (time = 0; time < nTimeTotal; time++) {
 
-              Int_t signalL = TMath::Abs(digits->GetDataUnchecked(row,col  ,time));
-              Int_t signalM = TMath::Abs(digits->GetDataUnchecked(row,col-1,time));
-              Int_t signalR = TMath::Abs(digits->GetDataUnchecked(row,col-2,time));
+              Float_t signalM = TMath::Abs(digitsOut->GetDataUnchecked(row,col-1,time));
  
              // Look for the maximum
               if (signalM >= maxThresh) {
-                if (((signalL >= sigThresh) &&
-                     (signalL <  signalM))  ||
-                    ((signalR >= sigThresh) &&
-                     (signalR <  signalM))) {
-                  // Maximum found, mark the position by a negative signal
-                  digits->SetDataUnchecked(row,col-1,time,-signalM);
+
+                Float_t signalL = TMath::Abs(digitsOut->GetDataUnchecked(row,col  ,time));
+                Float_t signalR = TMath::Abs(digitsOut->GetDataUnchecked(row,col-2,time));
+
+                if ((TMath::Abs(signalL) <= signalM) && 
+                    (TMath::Abs(signalR) <  signalM)) {
+                 if ((TMath::Abs(signalL) >= sigThresh) ||
+                     (TMath::Abs(signalR) >= sigThresh)) {
+                    // Maximum found, mark the position by a negative signal
+                    digitsOut->SetDataUnchecked(row,col-1,time,-signalM);
+                 }
                }
+
              }
 
-            }  
-          }    
-        }      
+            }
+          }
+        }
+        tracksTmp->Compress(1,0);
+
+       // The index to the first cluster of a given ROC
+        Int_t firstClusterROC = -1;
+       // The number of cluster in a given ROC
+        Int_t nClusterROC     =  0;
 
         // Now check the maxima and calculate the cluster position
         for ( row = 0;  row <  nRowMax  ;  row++) {
@@ -399,77 +339,46 @@ Bool_t AliTRDclusterizerV1::MakeClusters()
             for ( col = 1;  col <  nColMax-1;  col++) {
 
               // Maximum found ?             
-              if (digits->GetDataUnchecked(row,col,time) < 0) {
+              if (digitsOut->GetDataUnchecked(row,col,time) < 0.0) {
 
-                Int_t iPad;
                 for (iPad = 0; iPad < kNclus; iPad++) {
                   Int_t iPadCol = col - 1 + iPad;
-                  clusterSignal[iPad]     = TMath::Abs(digits->GetDataUnchecked(row
-                                                                               ,iPadCol
-                                                                               ,time));
-                  clusterDigit[iPad]      = digits->GetIndexUnchecked(row,iPadCol,time);
-                  clusterTracks[3*iPad  ] = track0->GetDataUnchecked(row,iPadCol,time) - 1;
-                 clusterTracks[3*iPad+1] = track1->GetDataUnchecked(row,iPadCol,time) - 1;
-                 clusterTracks[3*iPad+2] = track2->GetDataUnchecked(row,iPadCol,time) - 1;
+                  clusterSignal[iPad] = 
+                    TMath::Abs(digitsOut->GetDataUnchecked(row,iPadCol,time));
                 }
 
                // Count the number of pads in the cluster
                 Int_t nPadCount = 0;
-                Int_t ii        = 0;
-                while (TMath::Abs(digits->GetDataUnchecked(row,col-ii  ,time))
-                                                                  >= sigThresh) {
+                Int_t ii;
+               // Look to the left
+                ii = 0;
+                while (TMath::Abs(digitsOut->GetDataUnchecked(row,col-ii  ,time)) >= sigThresh) {
                   nPadCount++;
                   ii++;
                   if (col-ii   <        0) break;
                }
+               // Look to the right
                 ii = 0;
-                while (TMath::Abs(digits->GetDataUnchecked(row,col+ii+1,time))
-                                                                  >= sigThresh) {
+                while (TMath::Abs(digitsOut->GetDataUnchecked(row,col+ii+1,time)) >= sigThresh) {
                   nPadCount++;
                   ii++;
                   if (col+ii+1 >= nColMax) break;
                }
-
                 nClusters++;
-                switch (nPadCount) {
-                case 2:
-                  iType = 0;
-                  nClusters2pad++;
-                  break;
-                case 3:
-                  iType = 1;
-                  nClusters3pad++;
-                  break;
-                case 4:
-                  iType = 2;
-                  nClusters4pad++;
-                  break;
-                case 5:
-                  iType = 3;
-                  nClusters5pad++;
-                  break;
-                default:
-                  iType = 4;
-                  nClustersLarge++;
-                  break;
-               };
-
-               // Don't analyze large clusters
-                //if (iType == 4) continue;
-
-                // Look for 5 pad cluster with minimum in the middle
+
+               // Look for 5 pad cluster with minimum in the middle
                 Bool_t fivePadCluster = kFALSE;
-                if (col < nColMax-3) {
-                  if (digits->GetDataUnchecked(row,col+2,time) < 0) {
+                if (col < (nColMax - 3)) {
+                  if (digitsOut->GetDataUnchecked(row,col+2,time) < 0) {
                     fivePadCluster = kTRUE;
                  }
-                  if ((fivePadCluster) && (col < nColMax-5)) {
-                    if (digits->GetDataUnchecked(row,col+4,time) >= sigThresh) {
+                  if ((fivePadCluster) && (col < (nColMax - 5))) {
+                    if (digitsOut->GetDataUnchecked(row,col+4,time) >= sigThresh) {
                       fivePadCluster = kFALSE;
                    }
                  }
-                  if ((fivePadCluster) && (col >         1)) {
-                    if (digits->GetDataUnchecked(row,col-2,time) >= sigThresh) {
+                  if ((fivePadCluster) && (col >             1)) {
+                    if (digitsOut->GetDataUnchecked(row,col-2,time) >= sigThresh) {
                       fivePadCluster = kFALSE;
                    }
                  }
@@ -480,158 +389,216 @@ Bool_t AliTRDclusterizerV1::MakeClusters()
                // of the cluster which remains from a previous unfolding
                 if (iUnfold) {
                   clusterSignal[0] *= ratioLeft;
-                  iType   = 3;
                   iUnfold = 0;
                }
 
                // Unfold the 5 pad cluster
                 if (fivePadCluster) {
                   for (iPad = 0; iPad < kNsig; iPad++) {
-                    padSignal[iPad] = TMath::Abs(digits->GetDataUnchecked(row
-                                                                         ,col-1+iPad
-                                                                         ,time));
+                    padSignal[iPad] = TMath::Abs(digitsOut->GetDataUnchecked(row
+                                                                           ,col-1+iPad
+                                                                           ,time));
                   }
                   // Unfold the two maxima and set the signal on 
                   // the overlapping pad to the ratio
-                  ratioRight        = Unfold(kEpsilon,padSignal);
+                  ratioRight        = Unfold(kEpsilon,iplan,padSignal);
                   ratioLeft         = 1.0 - ratioRight; 
                   clusterSignal[2] *= ratioRight;
-                  iType   = 3;
                   iUnfold = 1;
                 }
 
-                Float_t clusterCharge = clusterSignal[0]
-                                      + clusterSignal[1]
-                                      + clusterSignal[2];
+                Double_t clusterCharge = clusterSignal[0]
+                                       + clusterSignal[1]
+                                       + clusterSignal[2];
                 
                // The position of the cluster
-                clusterPads[0] = row + 0.5;
+                clusterPads[0] =  row + 0.5;
                // Take the shift of the additional time bins into account
-                clusterPads[2] = time - nTimeBefore + 0.5;
-
-                if (fUseLUT) {
+                clusterPads[2] = time + 0.5;
 
+                if (recParam->LUTOn()) {
                  // Calculate the position of the cluster by using the
                  // lookup table method
-                  Float_t ratioLUT;
-                  Float_t signLUT;
-                  Float_t lut = 0.0;
-                  if (clusterSignal[0] > clusterSignal[2]) {
-                    ratioLUT = clusterSignal[0] / clusterSignal[1];
-                    signLUT  = -1.0;
-                 }
-                  else {
-                    ratioLUT = clusterSignal[2] / clusterSignal[1];
-                    signLUT  =  1.0;
-                 }
-                  if      (ratioLUT < kLUTmin) {
-                    lut = 0.0;
+                  clusterPads[1] = recParam->LUTposition(iplan,clusterSignal[0]
+                                                              ,clusterSignal[1]
+                                                              ,clusterSignal[2]);
+               }
+               else {
+                 // Calculate the position of the cluster by using the
+                 // center of gravity method
+                 for (Int_t i = 0; i < kNsig; i++) {
+                    padSignal[i] = 0.0;
                  }
-                  else if (ratioLUT > kLUTmax) {
-                    lut = 0.5;
+                 padSignal[2] = TMath::Abs(digitsOut->GetDataUnchecked(row,col  ,time)); // Central pad
+                 padSignal[1] = TMath::Abs(digitsOut->GetDataUnchecked(row,col-1,time)); // Left    pad
+                 padSignal[3] = TMath::Abs(digitsOut->GetDataUnchecked(row,col+1,time)); // Right   pad
+                 if ((col >           2) && 
+                      (TMath::Abs(digitsOut->GetDataUnchecked(row,col-2,time)) < padSignal[1])) {
+                   padSignal[0] = TMath::Abs(digitsOut->GetDataUnchecked(row,col-2,time));
                  }
-                  else {
-                    Int_t indexLUT = TMath::Nint ((kNlut-1) * (ratioLUT - kLUTmin)  
-                                                           / (kLUTmax  - kLUTmin)); 
-                    lut = fLUT[indexLUT];
+                 if ((col < nColMax - 3) &&
+                      (TMath::Abs(digitsOut->GetDataUnchecked(row,col+2,time)) < padSignal[3])) {
+                   padSignal[4] = TMath::Abs(digitsOut->GetDataUnchecked(row,col+2,time));
+                 }               
+                 clusterPads[1] = GetCOG(padSignal);
+               }
+
+                Double_t q0 = clusterSignal[0];
+               Double_t q1 = clusterSignal[1];
+                Double_t q2 = clusterSignal[2];
+                Double_t clusterSigmaY2 = (q1 * (q0 + q2) + 4.0 * q0 * q2)
+                                        / (clusterCharge*clusterCharge);
+
+               //
+                // Calculate the position and the error
+               //              
+
+                // Correct for t0 (sum of chamber and pad wise values !!!)
+                Float_t  calT0ROCValue  = calT0ROC->GetValue(col,row);
+               Char_t   clusterTimeBin = ((Char_t) TMath::Nint(time - (calT0DetValue + calT0ROCValue)));
+                Double_t colSize        = padPlane->GetColSize(col);
+                Double_t rowSize        = padPlane->GetRowSize(row);
+
+                Float_t clusterPos[3];
+               clusterPos[0] = padPlane->GetColPos(col) - (clusterPads[1] + 0.5) * colSize;
+               clusterPos[1] = padPlane->GetRowPos(row) - 0.5                    * rowSize;
+                clusterPos[2] = CalcXposFromTimebin(clusterPads[2],idet,col,row);
+                Float_t clusterSig[2];
+                clusterSig[0] = (clusterSigmaY2 + 1.0/12.0) * colSize*colSize;
+                clusterSig[1] = rowSize * rowSize / 12.0;                                       
+               
+               // Store the amplitudes of the pads in the cluster for later analysis
+               Short_t signals[7] = { 0, 0, 0, 0, 0, 0, 0 };
+               for (Int_t jPad = col-3; jPad <= col+3; jPad++) {
+                 if ((jPad <          0) || 
+                      (jPad >= nColMax-1)) {
+                    continue;
                  }
-                  clusterPads[1] = col + 0.5 + signLUT * lut;
+                 signals[jPad-col+3] = TMath::Nint(TMath::Abs(digitsOut->GetDataUnchecked(row,jPad,time)));
+               }
 
+                // Add the cluster to the output array
+               // The track indices will be stored later 
+                AliTRDcluster *cluster = new AliTRDcluster(idet
+                                                          ,clusterCharge
+                                                          ,clusterPos
+                                                          ,clusterSig
+                                                          ,0x0
+                                                         ,((Char_t) nPadCount)
+                                                          ,signals
+                                                         ,((UChar_t) col)
+                                                          ,clusterTimeBin
+                                                          ,clusterPads[1]
+                                                          ,volid);
+               // Temporarily store the row, column and time bin of the center pad
+               // Used to later on assign the track indices
+                cluster->SetLabel( row,0);
+                cluster->SetLabel( col,1);
+                cluster->SetLabel(time,2);
+                RecPoints()->Add(cluster);
+
+               // Store the index of the first cluster in the current ROC
+                if (firstClusterROC < 0) {
+                  firstClusterROC = RecPoints()->GetEntriesFast() - 1;
                }
-               else {
+               // Count the number of cluster in the current ROC
+                nClusterROC++;
 
-                 // Calculate the position of the cluster by using the
-                 // center of gravity method
-                  clusterPads[1] = col + 0.5 
-                                 + (clusterSignal[2] - clusterSignal[0]) 
-                                / clusterCharge;
+              } // if: Maximum found ?
 
-               }
+            } // loop: pad columns
+          } // loop: time bins
+        } // loop: pad rows
 
-                Float_t clusterSigmaY2 = (clusterSignal[2] + clusterSignal[0]) / clusterCharge 
-                                       - (clusterPads[1]-col-0.5) * (clusterPads[1]-col-0.5);
+        delete digitsOut;
 
-                // Correct for ExB displacement
-                if (digitizer->GetExB()) { 
-                  Int_t   local_time_bin = (Int_t) clusterPads[2];
-                  Float_t driftLength    = local_time_bin * timeBinSize + kAmWidth;
-                  Float_t colSize        = geo->GetColPadSize(iplan);
-                  Float_t deltaY         = omegaTau*driftLength/colSize;
-                  clusterPads[1]         = clusterPads[1] - deltaY;
-                }
-                                       
-                if (fVerbose > 1) {
-                  printf("-----------------------------------------------------------\n");
-                  printf("Create cluster no. %d\n",nClusters);
-                  printf("Position: row = %f, col = %f, time = %f\n",clusterPads[0]
-                                                                   ,clusterPads[1]
-                                                                    ,clusterPads[2]);
-                  printf("Indices: %d, %d, %d\n",clusterDigit[0]
-                                               ,clusterDigit[1]
-                                                ,clusterDigit[2]);
-                  printf("Total charge = %f\n",clusterCharge);
-                  printf("Tracks: pad0 %d, %d, %d\n",clusterTracks[0]
-                                                   ,clusterTracks[1]
-                                                    ,clusterTracks[2]);
-                  printf("        pad1 %d, %d, %d\n",clusterTracks[3]
-                                                   ,clusterTracks[4]
-                                                    ,clusterTracks[5]);
-                  printf("        pad2 %d, %d, %d\n",clusterTracks[6]
-                                                   ,clusterTracks[7]
-                                                    ,clusterTracks[8]);
-                  printf("Type = %d, Number of pads = %d\n",iType,nPadCount);
-                }
+       //
+       // Add the track indices to the found clusters
+       //
 
-                // Add the cluster to the output array 
-                fTRD->AddCluster(clusterPads
-                                ,clusterDigit
-                                ,idet
-                                ,clusterCharge
-                                ,clusterTracks
-                               ,clusterSigmaY2
-                                ,iType);
-
-              }
-            } 
-          }   
-        }     
-
-       // Compress the arrays
-        digits->Compress(1,0);
-        track0->Compress(1,0);
-        track1->Compress(1,0);
-        track2->Compress(1,0);
+       // Temporary array to collect the track indices
+        Int_t *idxTracks = new Int_t[kNtrack*nClusterROC];
+
+       // Loop through the dictionary arrays one-by-one
+       // to keep memory consumption low
+        for (Int_t iDict = 0; iDict < kNdict; iDict++) {
+
+          tracksIn = fDigitsManager->GetDictionary(idet,iDict);
+          tracksIn->Expand();
+
+         // Loop though the clusters found in this ROC
+          for (iClusterROC = 0; iClusterROC < nClusterROC; iClusterROC++) {
+            AliTRDcluster *cluster = (AliTRDcluster *)
+                                    RecPoints()->UncheckedAt(firstClusterROC+iClusterROC);
+           row  = cluster->GetLabel(0);
+           col  = cluster->GetLabel(1);
+           time = cluster->GetLabel(2);
+
+            for (iPad = 0; iPad < kNclus; iPad++) {
+              Int_t iPadCol = col - 1 + iPad;
+              Int_t index   = tracksIn->GetDataUnchecked(row,iPadCol,time) - 1;
+              idxTracks[3*iPad+iDict + iClusterROC*kNtrack] = index;     
+           }
+
+         }
+
+          // Compress the arrays
+          tracksIn->Compress(1,0);
 
-        // Write the cluster and reset the array
-       WriteClusters(idet);
-       fTRD->ResetRecPoints();
-
-        if (fVerbose > 0) {
-          printf("AliTRDclusterizerV1::MakeCluster -- ");
-          printf("Found %d clusters in total.\n"
-                ,nClusters);
-          printf("                                    2pad:  %d\n",nClusters2pad);
-          printf("                                    3pad:  %d\n",nClusters3pad);
-          printf("                                    4pad:  %d\n",nClusters4pad);
-          printf("                                    5pad:  %d\n",nClusters5pad);
-          printf("                                    Large: %d\n",nClustersLarge);
        }
 
-      }    
-    }      
-  }        
+       // Copy the track indices into the cluster
+       // Loop though the clusters found in this ROC
+        for (iClusterROC = 0; iClusterROC < nClusterROC; iClusterROC++) {
+          AliTRDcluster *cluster = (AliTRDcluster *)
+                                  RecPoints()->UncheckedAt(firstClusterROC+iClusterROC);
+         cluster->SetLabel(-9999,0);
+         cluster->SetLabel(-9999,1);
+         cluster->SetLabel(-9999,2);
+  
+          cluster->AddTrackIndex(&idxTracks[iClusterROC*kNtrack]);
+
+       }
 
-  if (fVerbose > 0) {
-    printf("AliTRDclusterizerV1::MakeCluster -- ");
-    printf("Done.\n");
-  }
+        delete [] idxTracks;
+
+        // Write the cluster and reset the array
+       WriteClusters(idet);
+       ResetRecPoints();
+
+      } // loop: Sectors
+    } // loop: Planes
+  } // loop: Chambers
 
   return kTRUE;
 
 }
 
 //_____________________________________________________________________________
-Float_t AliTRDclusterizerV1::Unfold(Float_t eps, Float_t* padSignal)
+Double_t AliTRDclusterizerV1::GetCOG(Double_t signal[5])
+{
+  //
+  // Get COG position
+  // Used for clusters with more than 3 pads - where LUT not applicable
+  //
+
+  Double_t sum = signal[0]
+               + signal[1]
+               + signal[2] 
+               + signal[3]
+               + signal[4];
+
+  Double_t res = (0.0 * (-signal[0] + signal[4])
+                      + (-signal[1] + signal[3])) / sum;
+
+  return res;            
+
+}
+
+//_____________________________________________________________________________
+Double_t AliTRDclusterizerV1::Unfold(Double_t eps, Int_t plane, Double_t *padSignal)
 {
   //
   // Method to unfold neighbouring maxima.
@@ -640,13 +607,21 @@ Float_t AliTRDclusterizerV1::Unfold(Float_t eps, Float_t* padSignal)
   // The resulting ratio is then returned to the calling method.
   //
 
-  Int_t   itStep            = 0;      // Count iteration steps
+  AliTRDcalibDB *calibration = AliTRDcalibDB::Instance();
+  if (!calibration) {
+    AliError("No AliTRDcalibDB instance available\n");
+    return kFALSE;  
+  }
+  
+  Int_t   irc                = 0;
+  Int_t   itStep             = 0;                 // Count iteration steps
 
-  Float_t ratio             = 0.5;    // Start value for ratio
-  Float_t prevRatio         = 0;      // Store previous ratio
+  Double_t ratio             = 0.5;               // Start value for ratio
+  Double_t prevRatio         = 0.0;               // Store previous ratio
 
-  Float_t newLeftSignal[3]  = {0};    // Array to store left cluster signal
-  Float_t newRightSignal[3] = {0};    // Array to store right cluster signal
+  Double_t newLeftSignal[3]  = { 0.0, 0.0, 0.0 }; // Array to store left cluster signal
+  Double_t newRightSignal[3] = { 0.0, 0.0, 0.0 }; // Array to store right cluster signal
+  Double_t newSignal[3]      = { 0.0, 0.0, 0.0 };
 
   // Start the iteration
   while ((TMath::Abs(prevRatio - ratio) > eps) && (itStep < 10)) {
@@ -655,27 +630,24 @@ Float_t AliTRDclusterizerV1::Unfold(Float_t eps, Float_t* padSignal)
     prevRatio = ratio;
 
     // Cluster position according to charge ratio
-    Float_t maxLeft  = (ratio*padSignal[2] - padSignal[0]) 
-                     / (padSignal[0] + padSignal[1] + ratio*padSignal[2]);
-    Float_t maxRight = (padSignal[4] - (1-ratio)*padSignal[2]) 
-                     / ((1-ratio)*padSignal[2] + padSignal[3] + padSignal[4]);
+    Double_t maxLeft  = (ratio*padSignal[2] - padSignal[0]) 
+                      / (padSignal[0] + padSignal[1] + ratio*padSignal[2]);
+    Double_t maxRight = (padSignal[4] - (1-ratio)*padSignal[2]) 
+                      / ((1.0 - ratio)*padSignal[2] + padSignal[3] + padSignal[4]);
 
     // Set cluster charge ratio
-    Float_t ampLeft  = padSignal[1] / PadResponse(0 - maxLeft );
-    Float_t ampRight = padSignal[3] / PadResponse(0 - maxRight);
+    irc = calibration->PadResponse(1.0,maxLeft ,plane,newSignal);
+    Double_t ampLeft  = padSignal[1] / newSignal[1];
+    irc = calibration->PadResponse(1.0,maxRight,plane,newSignal);
+    Double_t ampRight = padSignal[3] / newSignal[1];
 
     // Apply pad response to parameters
-    newLeftSignal[0]  = ampLeft  * PadResponse(-1 - maxLeft);
-    newLeftSignal[1]  = ampLeft  * PadResponse( 0 - maxLeft);
-    newLeftSignal[2]  = ampLeft  * PadResponse( 1 - maxLeft);
-
-    newRightSignal[0] = ampRight * PadResponse(-1 - maxRight);
-    newRightSignal[1] = ampRight * PadResponse( 0 - maxRight);
-    newRightSignal[2] = ampRight * PadResponse( 1 - maxRight);
+    irc = calibration->PadResponse(ampLeft ,maxLeft ,plane,newLeftSignal );
+    irc = calibration->PadResponse(ampRight,maxRight,plane,newRightSignal);
 
     // Calculate new overlapping ratio
-    ratio = TMath::Min((Float_t)1.0,newLeftSignal[2] / 
-                          (newLeftSignal[2] + newRightSignal[0]));
+    ratio = TMath::Min((Double_t)1.0,newLeftSignal[2] / 
+                                    (newLeftSignal[2] + newRightSignal[0]));
 
   }
 
@@ -684,23 +656,134 @@ Float_t AliTRDclusterizerV1::Unfold(Float_t eps, Float_t* padSignal)
 }
 
 //_____________________________________________________________________________
-Float_t AliTRDclusterizerV1::PadResponse(Float_t x)
+void AliTRDclusterizerV1::Transform(AliTRDdataArrayI *digitsIn
+                                 , AliTRDdataArrayF *digitsOut
+                                 , Int_t nRowMax, Int_t nColMax, Int_t nTimeTotal
+                                 , Float_t ADCthreshold
+                                 , AliTRDCalROC *calGainFactorROC
+                                 , Float_t calGainFactorDetValue)
 {
   //
-  // The pad response for the chevron pads. 
-  // We use a simple Gaussian approximation which should be good
-  // enough for our purpose.
-  // Updated for new PRF 1/5/01.
+  // Apply gain factor
+  // Apply tail cancelation: Transform digitsIn to digitsOut
   //
 
-  // The parameters for the response function
-  const Float_t kA  =  0.8303; 
-  const Float_t kB  = -0.00392;
-  const Float_t kC  =  0.472 * 0.472;
-  const Float_t kD  =  2.19;
+  Int_t iRow  = 0;
+  Int_t iCol  = 0;
+  Int_t iTime = 0;
+
+  AliTRDRecParam *recParam = AliTRDRecParam::Instance();
+  if (!recParam) {
+    AliError("No AliTRDRecParam instance available\n");
+    return;
+  }
+
+  Double_t *inADC  = new Double_t[nTimeTotal];  // ADC data before tail cancellation
+  Double_t *outADC = new Double_t[nTimeTotal];  // ADC data after tail cancellation
+
+  for (iRow  = 0; iRow  <  nRowMax;   iRow++ ) {
+    for (iCol  = 0; iCol  <  nColMax;   iCol++ ) {
+
+      Float_t  calGainFactorROCValue = calGainFactorROC->GetValue(iCol,iRow);
+      Double_t gain                  = calGainFactorDetValue 
+                                     * calGainFactorROCValue;
+
+      for (iTime = 0; iTime < nTimeTotal; iTime++) {
+
+       //
+       // Add gain
+       //
+       inADC[iTime]   = digitsIn->GetDataUnchecked(iRow,iCol,iTime);
+        inADC[iTime]  /= gain;
+        outADC[iTime]  = inADC[iTime];
+
+      }
+
+      // Apply the tail cancelation via the digital filter
+      if (recParam->TCOn()) {
+       DeConvExp(inADC,outADC,nTimeTotal,recParam->GetTCnexp());
+      }
+
+      for (iTime = 0; iTime < nTimeTotal; iTime++) {
+
+       // Store the amplitude of the digit if above threshold
+       if (outADC[iTime] > ADCthreshold) {
+         digitsOut->SetDataUnchecked(iRow,iCol,iTime,outADC[iTime]);
+       }
+
+      }
+
+    }
+  }
 
-  Float_t pr = kA * (kB + TMath::Exp(-TMath::Power(x*x,kD) / (2.*kC)));
+  delete [] inADC;
+  delete [] outADC;
 
-  return (pr);
+  return;
+
+}
+
+//_____________________________________________________________________________
+void AliTRDclusterizerV1::DeConvExp(Double_t *source, Double_t *target
+                                 , Int_t n, Int_t nexp) 
+{
+  //
+  // Tail cancellation by deconvolution for PASA v4 TRF
+  //
+
+  Double_t rates[2];
+  Double_t coefficients[2];
+
+  // Initialization (coefficient = alpha, rates = lambda)
+  Double_t R1 = 1.0;
+  Double_t R2 = 1.0;
+  Double_t C1 = 0.5;
+  Double_t C2 = 0.5;
+
+  if (nexp == 1) {   // 1 Exponentials
+    R1 = 1.156;
+    R2 = 0.130;
+    C1 = 0.066;
+    C2 = 0.000;
+  }
+  if (nexp == 2) {   // 2 Exponentials
+    R1 = 1.156;
+    R2 = 0.130;
+    C1 = 0.114;
+    C2 = 0.624;
+  }
+
+  coefficients[0] = C1;
+  coefficients[1] = C2;
+
+  Double_t Dt = 0.1;
+
+  rates[0] = TMath::Exp(-Dt/(R1));
+  rates[1] = TMath::Exp(-Dt/(R2));
+  
+  Int_t i = 0;
+  Int_t k = 0;
+
+  Double_t reminder[2];
+  Double_t correction;
+  Double_t result;
+
+  // Attention: computation order is important
+  correction = 0.0;
+  for (k = 0; k < nexp; k++) {
+    reminder[k] = 0.0;
+  }
+  for (i = 0; i < n; i++) {
+    result    = (source[i] - correction);    // No rescaling
+    target[i] = result;
+
+    for (k = 0; k < nexp; k++) {
+      reminder[k] = rates[k] * (reminder[k] + coefficients[k] * result);
+    }
+    correction = 0.0;
+    for (k = 0; k < nexp; k++) {
+      correction += reminder[k];
+    }
+  }
 
 }