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1 /**************************************************************************\r
2  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *\r
3  *                                                                        *\r
4  * Author: The ALICE Off-line Project.                                    *\r
5  * Contributors are mentioned in the code where appropriate.              *\r
6  *                                                                        *\r
7  * Permission to use, copy, modify and distribute this software and its   *\r
8  * documentation strictly for non-commercial purposes is hereby granted   *\r
9  * without fee, provided that the above copyright notice appears in all   *\r
10  * copies and that both the copyright notice and this permission notice   *\r
11  * appear in the supporting documentation. The authors make no claims     *\r
12  * about the suitability of this software for any purpose. It is          *\r
13  * provided "as is" without express or implied warranty.                  *\r
14  **************************************************************************/\r
15 \r
16 /* $Id: AliAnalysisTaskESDfilter.cxx 24535 2008-03-16 22:43:30Z fca $ */\r
17  \r
18 #include <TChain.h>\r
19 #include <TTree.h>\r
20 #include <TList.h>\r
21 #include <TArrayI.h>\r
22 #include <TRandom.h>\r
23 #include <TParticle.h>\r
24 \r
25 #include "AliAnalysisTaskESDfilter.h"\r
26 #include "AliAnalysisManager.h"\r
27 #include "AliESDEvent.h"\r
28 #include "AliESDRun.h"\r
29 #include "AliStack.h"\r
30 #include "AliAODEvent.h"\r
31 #include "AliMCEvent.h"\r
32 #include "AliMCEventHandler.h"\r
33 #include "AliESDInputHandler.h"\r
34 #include "AliAODHandler.h"\r
35 #include "AliAODMCParticle.h"\r
36 #include "AliAnalysisFilter.h"\r
37 #include "AliESDMuonTrack.h"\r
38 #include "AliESDVertex.h"\r
39 #include "AliESDv0.h"\r
40 #include "AliESDkink.h"\r
41 #include "AliESDcascade.h"\r
42 #include "AliESDPmdTrack.h"\r
43 #include "AliESDCaloCluster.h"\r
44 #include "AliESDCaloCells.h"\r
45 #include "AliMultiplicity.h"\r
46 #include "AliLog.h"\r
47 \r
48 ClassImp(AliAnalysisTaskESDfilter)\r
49 \r
50 ////////////////////////////////////////////////////////////////////////\r
51 \r
52 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter():\r
53     AliAnalysisTaskSE(),\r
54     fTrackFilter(0x0),\r
55     fKinkFilter(0x0),\r
56     fV0Filter(0x0),\r
57     fCascadeFilter(0x0),\r
58     fHighPthreshold(0),\r
59     fPtshape(0x0)\r
60 {\r
61   // Default constructor\r
62 }\r
63 \r
64 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter(const char* name):\r
65     AliAnalysisTaskSE(name),\r
66     fTrackFilter(0x0),\r
67     fKinkFilter(0x0),\r
68     fV0Filter(0x0),\r
69     fCascadeFilter(0x0),\r
70     fHighPthreshold(0),\r
71     fPtshape(0x0)\r
72 {\r
73   // Constructor\r
74 }\r
75 \r
76 void AliAnalysisTaskESDfilter::UserCreateOutputObjects()\r
77 {\r
78   //\r
79   // Create Output Objects conenct filter to outputtree\r
80   // \r
81   if(OutputTree()){\r
82     OutputTree()->GetUserInfo()->Add(fTrackFilter);\r
83   }\r
84   else{\r
85     AliError("No OutputTree() for adding the track filter");\r
86   }\r
87 }\r
88 \r
89 void AliAnalysisTaskESDfilter::Init()\r
90 {\r
91     // Initialization\r
92     if (fDebug > 1) AliInfo("Init() \n");\r
93     // Call configuration file\r
94 }\r
95 \r
96 \r
97 void AliAnalysisTaskESDfilter::UserExec(Option_t */*option*/)\r
98 {\r
99 // Execute analysis for current event\r
100 //\r
101                                             \r
102   Long64_t ientry = Entry();\r
103   \r
104   if (fDebug > 0) {\r
105       printf("Filter: Analysing event # %5d\n", (Int_t) ientry);\r
106       if (fHighPthreshold == 0) AliInfo("detector PID signals are stored in each track");\r
107       if (!fPtshape) AliInfo("detector PID signals are not stored below the pt threshold");\r
108   }\r
109   // Filters must explicitely enable AOD filling in their UserExec (AG)\r
110   if (!AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()) AliFatal("Cannot run ESD filter without an output event handler");\r
111   AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()->SetFillAOD(kTRUE);\r
112 \r
113   ConvertESDtoAOD();\r
114 }\r
115 \r
116 void AliAnalysisTaskESDfilter::ConvertESDtoAOD() {\r
117     // ESD Filter analysis task executed for each event\r
118 \r
119     AliESDEvent* esd = dynamic_cast<AliESDEvent*>(InputEvent());\r
120     AliESD*      old = esd->GetAliESDOld();\r
121 \r
122     // Fetch Stack for debuggging if available \r
123     AliStack *pStack = 0;\r
124     AliMCEventHandler *mcH = 0;\r
125     if(MCEvent()){\r
126       pStack = MCEvent()->Stack();\r
127       mcH = (AliMCEventHandler*) ((AliAnalysisManager::GetAnalysisManager())->GetMCtruthEventHandler()); \r
128     }\r
129     // set arrays and pointers\r
130     Float_t posF[3];\r
131     Double_t pos[3];\r
132     Double_t p[3];\r
133     Double_t momPos[3]; \r
134     Double_t momNeg[3];\r
135     Double_t momBach[3];\r
136     Double_t momPosAtV0vtx[3];\r
137     Double_t momNegAtV0vtx[3];\r
138     Double_t momBachAtCascadeVtx[3];\r
139     Double_t covVtx[6];\r
140     Double_t covTr[21];\r
141     Double_t pid[10];\r
142 \r
143     for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
144     for (Int_t i = 0; i < 21; i++) covTr [i] = 0.;\r
145 \r
146     \r
147     // loop over events and fill them\r
148     // Multiplicity information needed by the header (to be revised!)\r
149     Int_t nTracks    = esd->GetNumberOfTracks();\r
150     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) esd->GetTrack(iTrack)->SetESDEvent(esd);\r
151 \r
152     //    if (fDebug > 0) printf("-------------------Bo: Number of ESD tracks %d \n",nTracks);\r
153 \r
154     Int_t nPosTracks = 0;\r
155     \r
156     // Update the header\r
157 \r
158     AliAODHeader* header = AODEvent()->GetHeader();\r
159     \r
160     header->SetRunNumber(esd->GetRunNumber());\r
161     header->SetOfflineTrigger(fInputHandler->IsEventSelected()); // propagate the decision of the physics selection\r
162     if (old) {\r
163         header->SetBunchCrossNumber(0);\r
164         header->SetOrbitNumber(0);\r
165         header->SetPeriodNumber(0);\r
166         header->SetEventType(0);\r
167         header->SetMuonMagFieldScale(-999.);\r
168         header->SetCentrality(-999.);       \r
169     } else {\r
170         header->SetBunchCrossNumber(esd->GetBunchCrossNumber());\r
171         header->SetOrbitNumber(esd->GetOrbitNumber());\r
172         header->SetPeriodNumber(esd->GetPeriodNumber());\r
173         header->SetEventType(esd->GetEventType());\r
174         header->SetCentrality(-999.);        // FIXME\r
175     }\r
176     // Trigger\r
177     header->SetFiredTriggerClasses(esd->GetFiredTriggerClasses());\r
178     header->SetTriggerMask(esd->GetTriggerMask()); \r
179     header->SetTriggerCluster(esd->GetTriggerCluster());\r
180     \r
181 \r
182     header->SetMagneticField(esd->GetMagneticField());\r
183     header->SetMuonMagFieldScale(esd->GetCurrentDip()/6000.);\r
184     header->SetZDCN1Energy(esd->GetZDCN1Energy());\r
185     header->SetZDCP1Energy(esd->GetZDCP1Energy());\r
186     header->SetZDCN2Energy(esd->GetZDCN2Energy());\r
187     header->SetZDCP2Energy(esd->GetZDCP2Energy());\r
188     header->SetZDCEMEnergy(esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));\r
189 \r
190     \r
191     Float_t diamxy[2]={esd->GetDiamondX(),esd->GetDiamondY()};\r
192     Float_t diamcov[3]; esd->GetDiamondCovXY(diamcov);\r
193     header->SetDiamond(diamxy,diamcov);\r
194     header->SetDiamondZ(esd->GetDiamondZ(),esd->GetSigma2DiamondZ());\r
195 //\r
196 //\r
197     Int_t nV0s      = esd->GetNumberOfV0s();\r
198     Int_t nCascades = esd->GetNumberOfCascades();\r
199     Int_t nKinks    = esd->GetNumberOfKinks();\r
200     Int_t nVertices = nV0s + nCascades /*V0 wihtin cascade already counted*/+ nKinks + 1 /* = prim. vtx*/;\r
201     Int_t nPileSPDVertices=1+esd->GetNumberOfPileupVerticesSPD(); // also SPD main vertex\r
202     Int_t nPileTrkVertices=esd->GetNumberOfPileupVerticesTracks();\r
203     nVertices+=nPileSPDVertices;\r
204     nVertices+=nPileTrkVertices;\r
205     Int_t nJets     = 0;\r
206     Int_t nCaloClus = esd->GetNumberOfCaloClusters();\r
207     Int_t nFmdClus  = 0;\r
208     Int_t nPmdClus  = esd->GetNumberOfPmdTracks();\r
209     \r
210     if (fDebug > 0) \r
211         printf("   NV0=%d  NCASCADES=%d  NKINKS=%d\n", nV0s, nCascades, nKinks);\r
212        \r
213     AODEvent()->ResetStd(nTracks, nVertices, nV0s, nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);\r
214 \r
215 \r
216     AliAODTrack   *aodTrack       = 0x0;\r
217     AliAODPid     *detpid         = 0x0;\r
218     Double_t      timezero        = 0;   //TO BE FIXED\r
219     AliAODVertex  *vV0FromCascade = 0x0;\r
220     AliAODv0      *aodV0          = 0x0;\r
221     AliAODcascade *aodCascade     = 0x0;\r
222     \r
223     // RefArray to store the mapping between esd track number and newly created AOD-Track\r
224     TRefArray   *aodTrackRefs = NULL;\r
225     if (nTracks > 0) aodTrackRefs = new TRefArray(nTracks);\r
226 \r
227     // RefArray to store a mapping between esd V0 number and newly created AOD-Vertex V0\r
228     TRefArray   *aodV0VtxRefs = NULL;\r
229     if (nV0s > 0) aodV0VtxRefs = new TRefArray(nV0s);\r
230 \r
231     // RefArray to store the mapping between esd V0 number and newly created AOD-V0\r
232     TRefArray   *aodV0Refs = NULL;\r
233     if (nV0s > 0) aodV0Refs = new TRefArray(nV0s);\r
234 \r
235     \r
236 \r
237 \r
238 \r
239     // Array to take into account the tracks already added to the AOD\r
240     Bool_t * usedTrack = NULL;\r
241     if (nTracks>0) {\r
242         usedTrack = new Bool_t[nTracks];\r
243         for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;\r
244     }\r
245     // Array to take into account the V0s already added to the AOD (V0 within cascades)\r
246     Bool_t * usedV0 = NULL;\r
247     if (nV0s>0) {\r
248         usedV0 = new Bool_t[nV0s];\r
249         for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;\r
250     }\r
251     // Array to take into account the kinks already added to the AOD\r
252     Bool_t * usedKink = NULL;\r
253     if (nKinks>0) {\r
254         usedKink = new Bool_t[nKinks];\r
255         for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;\r
256     }\r
257     \r
258     // Access to the AOD container of vertices\r
259     TClonesArray &vertices = *(AODEvent()->GetVertices());\r
260     Int_t jVertices=0;\r
261     \r
262     // Access to the AOD container of tracks\r
263     TClonesArray &tracks = *(AODEvent()->GetTracks());\r
264     Int_t jTracks=0; \r
265     \r
266     // Access to the AOD container of Cascades\r
267     TClonesArray &cascades = *(AODEvent()->GetCascades());\r
268     Int_t jCascades=0;\r
269 \r
270     // Access to the AOD container of V0s\r
271     TClonesArray &v0s = *(AODEvent()->GetV0s());\r
272     Int_t jV0s=0;\r
273     \r
274     // Add primary vertex. The primary tracks will be defined\r
275     // after the loops on the composite objects (V0, cascades, kinks)\r
276     const AliESDVertex *vtx = esd->GetPrimaryVertex();\r
277     \r
278     vtx->GetXYZ(pos); // position\r
279     vtx->GetCovMatrix(covVtx); //covariance matrix\r
280     \r
281     AliAODVertex * primary = new(vertices[jVertices++])\r
282         AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);\r
283     primary->SetName(vtx->GetName());\r
284     primary->SetTitle(vtx->GetTitle());\r
285 \r
286     TString vtitle = vtx->GetTitle();\r
287     if (!vtitle.Contains("VertexerTracks")) \r
288       primary->SetNContributors(vtx->GetNContributors());\r
289 \r
290     if (fDebug > 0) primary->Print();\r
291 \r
292 \r
293     // Add SPD "main" vertex \r
294     const AliESDVertex *vtxS = esd->GetPrimaryVertexSPD();\r
295     vtxS->GetXYZ(pos); // position\r
296     vtxS->GetCovMatrix(covVtx); //covariance matrix\r
297     AliAODVertex * mVSPD = new(vertices[jVertices++])\r
298       AliAODVertex(pos, covVtx, vtxS->GetChi2toNDF(), NULL, -1, AliAODVertex::kMainSPD);\r
299     mVSPD->SetName(vtxS->GetName());\r
300     mVSPD->SetTitle(vtxS->GetTitle());\r
301     mVSPD->SetNContributors(vtxS->GetNContributors()); \r
302 \r
303     // Add SPD pileup vertices\r
304     for(Int_t iV=0; iV<nPileSPDVertices-1; iV++){\r
305       const AliESDVertex *vtxP = esd->GetPileupVertexSPD(iV);\r
306       vtxP->GetXYZ(pos); // position\r
307       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
308       AliAODVertex * pVSPD =  new(vertices[jVertices++])\r
309         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupSPD);\r
310       pVSPD->SetName(vtxP->GetName());\r
311       pVSPD->SetTitle(vtxP->GetTitle());\r
312       pVSPD->SetNContributors(vtxP->GetNContributors()); \r
313     }\r
314 \r
315     // Add TRK pileup vertices\r
316     for(Int_t iV=0; iV<nPileTrkVertices; iV++){\r
317       const AliESDVertex *vtxP = esd->GetPileupVertexTracks(iV);\r
318       vtxP->GetXYZ(pos); // position\r
319       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
320       AliAODVertex * pVTRK = new(vertices[jVertices++])\r
321         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupTracks);\r
322       pVTRK->SetName(vtxP->GetName());\r
323       pVTRK->SetTitle(vtxP->GetTitle());\r
324       pVTRK->SetNContributors(vtxP->GetNContributors());\r
325     }\r
326 \r
327     // Create vertices starting from the most complex objects\r
328     Double_t chi2 = 0.;\r
329     \r
330     // Cascades (Modified by A.Maire - February 2009)\r
331     for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {\r
332 \r
333         if (fDebug > 1) \r
334         printf("\n ******** Cascade number : %d/%d *********\n", nCascade, nCascades);\r
335 \r
336         // 0- Preparation\r
337         //\r
338         AliESDcascade *esdCascade = esd->GetCascade(nCascade);\r
339                 Int_t  idxPosFromV0Dghter  = esdCascade->GetPindex();\r
340                 Int_t  idxNegFromV0Dghter  = esdCascade->GetNindex();\r
341                 Int_t  idxBachFromCascade  = esdCascade->GetBindex();\r
342         \r
343         AliESDtrack  *esdCascadePos  = esd->GetTrack( idxPosFromV0Dghter);\r
344         AliESDtrack  *esdCascadeNeg  = esd->GetTrack( idxNegFromV0Dghter);\r
345         AliESDtrack  *esdCascadeBach = esd->GetTrack( idxBachFromCascade);\r
346 \r
347         // Identification of the V0 within the esdCascade (via both daughter track indices)\r
348         AliESDv0 * currentV0   = 0x0;\r
349         Int_t      idxV0FromCascade = -1;\r
350         \r
351         for (Int_t iV0=0; iV0<nV0s; ++iV0) {\r
352         \r
353                          currentV0 = esd->GetV0(iV0);\r
354                 Int_t posCurrentV0 = currentV0->GetPindex();\r
355                 Int_t negCurrentV0 = currentV0->GetNindex();\r
356         \r
357                 if (posCurrentV0==idxPosFromV0Dghter && negCurrentV0==idxNegFromV0Dghter) {\r
358                 idxV0FromCascade = iV0;\r
359                 break;\r
360                 }\r
361         }\r
362 \r
363         if(idxV0FromCascade < 0){\r
364                 printf("Cascade - no matching for the V0 (index V0 = -1) ! Skip ... \n");\r
365                 continue;\r
366         }// a priori, useless check, but safer ... in case of pb with tracks "out of bounds"\r
367 \r
368         if (fDebug > 1) \r
369                 printf("Cascade %d - V0fromCascade ind : %d/%d\n", nCascade, idxV0FromCascade, nV0s);\r
370 \r
371         AliESDv0 *esdV0FromCascade   = esd->GetV0(idxV0FromCascade);\r
372         \r
373 \r
374         // 1 - Cascade selection \r
375         \r
376         //      AliESDVertex *esdPrimVtx = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
377         //      TList cascadeObjects;\r
378         //      cascadeObjects.AddAt(esdV0FromCascade, 0);\r
379         //      cascadeObjects.AddAt(esdCascadePos,    1);\r
380         //      cascadeObjects.AddAt(esdCascadeNeg,    2);\r
381         //      cascadeObjects.AddAt(esdCascade,       3);\r
382         //      cascadeObjects.AddAt(esdCascadeBach,   4);\r
383         //      cascadeObjects.AddAt(esdPrimVtx,       5);\r
384         // \r
385         //      UInt_t selectCascade = 0;\r
386         //      if (fCascadeFilter) {\r
387         //        // selectCascade = fCascadeFilter->IsSelected(&cascadeObjects); \r
388         //              // FIXME AliESDCascadeCuts to be implemented ...\r
389         // \r
390         //              // Here we may encounter a moot point at the V0 level \r
391         //              // between the cascade selections and the V0 ones :\r
392         //              // the V0 selected along with the cascade (secondary V0) may \r
393         //              // usually be removed from the dedicated V0 selections (prim V0) ...\r
394         //              // -> To be discussed !\r
395         // \r
396         //        // this is a little awkward but otherwise the \r
397         //        // list wants to access the pointer (delete it) \r
398         //        // again when going out of scope\r
399         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
400         //        esdPrimVtx = 0;\r
401         //        if (!selectCascade) \r
402         //          continue;\r
403         //      }\r
404         //      else{\r
405         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
406         //        esdPrimVtx = 0;\r
407         //      }\r
408 \r
409         // 2 - Add the cascade vertex\r
410         \r
411         esdCascade->GetXYZcascade(pos[0], pos[1], pos[2]);\r
412         esdCascade->GetPosCovXi(covVtx);\r
413         chi2 = esdCascade->GetChi2Xi(); \r
414         \r
415         AliAODVertex *vCascade = new(vertices[jVertices++]) AliAODVertex( pos,\r
416                                                                           covVtx,\r
417                                                                           chi2, // FIXME = Chi2/NDF will be needed\r
418                                                                           primary,\r
419                                                                           nCascade, // id\r
420                                                                           AliAODVertex::kCascade);\r
421         primary->AddDaughter(vCascade);\r
422 \r
423         if (fDebug > 2) {\r
424                 printf("---- Cascade / Cascade Vertex (AOD) : \n");\r
425                 vCascade->Print();\r
426         }\r
427 \r
428 \r
429         // 3 - Add the bachelor track from the cascade\r
430         \r
431         if (!usedTrack[idxBachFromCascade]) {\r
432 \r
433         esdCascadeBach->GetPxPyPz(momBach);\r
434         esdCascadeBach->GetXYZ(pos);\r
435         esdCascadeBach->GetCovarianceXYZPxPyPz(covTr);\r
436         esdCascadeBach->GetESDpid(pid);\r
437 \r
438             usedTrack[idxBachFromCascade] = kTRUE;\r
439             UInt_t selectInfo = 0;\r
440             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeBach);\r
441             if(mcH)mcH->SelectParticle(esdCascadeBach->GetLabel());\r
442             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdCascadeBach->GetID(),\r
443                                                           esdCascadeBach->GetLabel(), \r
444                                                           momBach, \r
445                                                           kTRUE,\r
446                                                           pos,\r
447                                                           kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
448                                                           covTr, \r
449                                                           (Short_t)esdCascadeBach->GetSign(),\r
450                                                           esdCascadeBach->GetITSClusterMap(), \r
451                                                           pid,\r
452                                                           vCascade,\r
453                                                           kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
454                                                           vtx->UsesTrack(esdCascadeBach->GetID()),\r
455                                                           AliAODTrack::kSecondary,\r
456                                                           selectInfo);\r
457             aodTrack->SetTPCClusterMap(esdCascadeBach->GetTPCClusterMap());\r
458             aodTrack->SetTPCSharedMap (esdCascadeBach->GetTPCSharedMap());\r
459             aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeBach));\r
460             aodTrackRefs->AddAt(aodTrack,idxBachFromCascade);\r
461             \r
462             if (esdCascadeBach->GetSign() > 0) nPosTracks++;\r
463             aodTrack->ConvertAliPIDtoAODPID();\r
464             aodTrack->SetFlags(esdCascadeBach->GetStatus());\r
465             SetAODPID(esdCascadeBach,aodTrack,detpid,timezero,esd->GetMagneticField());\r
466         }\r
467         else {\r
468             aodTrack = dynamic_cast<AliAODTrack*>( aodTrackRefs->At(idxBachFromCascade) );\r
469         }\r
470 \r
471         vCascade->AddDaughter(aodTrack);\r
472 \r
473         if (fDebug > 4) {\r
474                 printf("---- Cascade / bach dghter : \n");\r
475                 aodTrack->Print();\r
476         }\r
477         \r
478 \r
479         // 4 - Add the V0 from the cascade. \r
480         // = V0vtx + both pos and neg daughter tracks + the aodV0 itself\r
481         //\r
482 \r
483         if ( !usedV0[idxV0FromCascade] ) {\r
484         // 4.A - if VO structure hasn't been created yet\r
485                 \r
486                 // 4.A.1 - Create the V0 vertex of the cascade\r
487         \r
488                 esdV0FromCascade->GetXYZ(pos[0], pos[1], pos[2]);\r
489                 esdV0FromCascade->GetPosCov(covVtx);\r
490                 chi2 = esdV0FromCascade->GetChi2V0();  // = chi2/NDF since NDF = 2*2-3 ?\r
491                         \r
492                 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,\r
493                                                                         covVtx,\r
494                                                                         chi2,\r
495                                                                         vCascade,\r
496                                                                         idxV0FromCascade, //id of ESDv0\r
497                                                                         AliAODVertex::kV0);\r
498                 // Note:\r
499                 //    one V0 can be used by several cascades.\r
500                 // So, one AOD V0 vtx can have several parent vtx.\r
501                 // This is not directly allowed by AliAODvertex.\r
502                 // Setting the parent vtx (here = param "vCascade") doesn't lead to a crash\r
503                 // but to a problem of consistency within AODEvent.\r
504                 // -> See below paragraph 4.B, for the proposed treatment of such a case.\r
505 \r
506                 // Add the vV0FromCascade to the aodVOVtxRefs\r
507                 aodV0VtxRefs->AddAt(vV0FromCascade,idxV0FromCascade);\r
508                 \r
509                 \r
510                 // 4.A.2 - Add the positive tracks from the V0\r
511                 \r
512                 esdCascadePos->GetPxPyPz(momPos);\r
513                 esdCascadePos->GetXYZ(pos);\r
514                 esdCascadePos->GetCovarianceXYZPxPyPz(covTr);\r
515                 esdCascadePos->GetESDpid(pid);\r
516                 \r
517         \r
518                 if (!usedTrack[idxPosFromV0Dghter]) {\r
519                 usedTrack[idxPosFromV0Dghter] = kTRUE;\r
520         \r
521                 UInt_t selectInfo = 0;\r
522                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadePos);\r
523                 if(mcH) mcH->SelectParticle(esdCascadePos->GetLabel());\r
524                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadePos->GetID(),\r
525                                                                 esdCascadePos->GetLabel(), \r
526                                                                 momPos, \r
527                                                                 kTRUE,\r
528                                                                 pos,\r
529                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
530                                                                 covTr, \r
531                                                                 (Short_t)esdCascadePos->GetSign(),\r
532                                                                 esdCascadePos->GetITSClusterMap(), \r
533                                                                 pid,\r
534                                                                 vV0FromCascade,\r
535                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
536                                                                 vtx->UsesTrack(esdCascadePos->GetID()),\r
537                                                                 AliAODTrack::kSecondary,\r
538                                                                 selectInfo);\r
539                 aodTrack->SetTPCClusterMap(esdCascadePos->GetTPCClusterMap());\r
540                 aodTrack->SetTPCSharedMap (esdCascadePos->GetTPCSharedMap());\r
541                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadePos));\r
542                 aodTrackRefs->AddAt(aodTrack,idxPosFromV0Dghter);\r
543 \r
544                 if (esdCascadePos->GetSign() > 0) nPosTracks++;\r
545                 aodTrack->ConvertAliPIDtoAODPID();\r
546                 aodTrack->SetFlags(esdCascadePos->GetStatus());\r
547                 SetAODPID(esdCascadePos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
548                 }\r
549                 else {\r
550                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxPosFromV0Dghter));\r
551                 }\r
552                 vV0FromCascade->AddDaughter(aodTrack);\r
553         \r
554         \r
555                 // 4.A.3 - Add the negative tracks from the V0\r
556                 \r
557                 esdCascadeNeg->GetPxPyPz(momNeg);\r
558                 esdCascadeNeg->GetXYZ(pos);\r
559                 esdCascadeNeg->GetCovarianceXYZPxPyPz(covTr);\r
560                 esdCascadeNeg->GetESDpid(pid);\r
561                 \r
562                 \r
563                 if (!usedTrack[idxNegFromV0Dghter]) {\r
564                 usedTrack[idxNegFromV0Dghter] = kTRUE;\r
565         \r
566                 UInt_t selectInfo = 0;\r
567                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeNeg);\r
568                 if(mcH)mcH->SelectParticle(esdCascadeNeg->GetLabel());\r
569                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadeNeg->GetID(),\r
570                                                                 esdCascadeNeg->GetLabel(),\r
571                                                                 momNeg,\r
572                                                                 kTRUE,\r
573                                                                 pos,\r
574                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
575                                                                 covTr, \r
576                                                                 (Short_t)esdCascadeNeg->GetSign(),\r
577                                                                 esdCascadeNeg->GetITSClusterMap(), \r
578                                                                 pid,\r
579                                                                 vV0FromCascade,\r
580                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
581                                                                 vtx->UsesTrack(esdCascadeNeg->GetID()),\r
582                                                                 AliAODTrack::kSecondary,\r
583                                                                 selectInfo);\r
584                 aodTrack->SetTPCClusterMap(esdCascadeNeg->GetTPCClusterMap());\r
585                 aodTrack->SetTPCSharedMap (esdCascadeNeg->GetTPCSharedMap());\r
586                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeNeg));\r
587                 aodTrackRefs->AddAt(aodTrack,idxNegFromV0Dghter);\r
588                 \r
589                 if (esdCascadeNeg->GetSign() > 0) nPosTracks++;\r
590                 aodTrack->ConvertAliPIDtoAODPID();\r
591                 aodTrack->SetFlags(esdCascadeNeg->GetStatus());\r
592                 SetAODPID(esdCascadeNeg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
593                 }\r
594                 else {\r
595                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxNegFromV0Dghter));\r
596                 }\r
597         \r
598                 vV0FromCascade->AddDaughter(aodTrack);\r
599         \r
600                         \r
601                 // 4.A.4 - Add the V0 from cascade to the V0 array\r
602 \r
603                 Double_t  dcaV0Daughters      = esdV0FromCascade->GetDcaV0Daughters();\r
604                 Double_t  dcaV0ToPrimVertex   = esdV0FromCascade->GetD( esd->GetPrimaryVertex()->GetX(),\r
605                                                                         esd->GetPrimaryVertex()->GetY(),\r
606                                                                         esd->GetPrimaryVertex()->GetZ() );\r
607                 esdV0FromCascade->GetPPxPyPz( momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2] ); \r
608                 esdV0FromCascade->GetNPxPyPz( momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2] ); \r
609         \r
610                 Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
611                 dcaDaughterToPrimVertex[0] = TMath::Abs(esdCascadePos->GetD(    esd->GetPrimaryVertex()->GetX(),\r
612                                                                                 esd->GetPrimaryVertex()->GetY(),\r
613                                                                                 esd->GetMagneticField())        );\r
614                 dcaDaughterToPrimVertex[1] = TMath::Abs(esdCascadeNeg->GetD(    esd->GetPrimaryVertex()->GetX(),\r
615                                                                                 esd->GetPrimaryVertex()->GetY(),\r
616                                                                                 esd->GetMagneticField())        );\r
617                 \r
618                 aodV0 = new(v0s[jV0s++]) AliAODv0( vV0FromCascade, \r
619                                                    dcaV0Daughters,\r
620                                                    dcaV0ToPrimVertex, \r
621                                                    momPosAtV0vtx, \r
622                                                    momNegAtV0vtx, \r
623                                                    dcaDaughterToPrimVertex); \r
624                 // set the aod v0 on-the-fly status\r
625                 aodV0->SetOnFlyStatus(esdV0FromCascade->GetOnFlyStatus());\r
626 \r
627                 // Add the aodV0 to the aodVORefs\r
628                 aodV0Refs->AddAt(aodV0,idxV0FromCascade);\r
629                 \r
630         usedV0[idxV0FromCascade] = kTRUE;\r
631 \r
632         } else { \r
633         // 4.B - if V0 structure already used\r
634 \r
635                 // Note :\r
636                 //    one V0 can be used by several cascades (frequent in PbPb evts) : \r
637                 // same V0 which used but attached to different bachelor tracks\r
638                 // -> aodVORefs and aodV0VtxRefs are needed.\r
639                 // Goal : avoid a redundancy of the info in "Vertices" and "v0s" clones array.\r
640         \r
641                 vV0FromCascade = dynamic_cast<AliAODVertex*>( aodV0VtxRefs->At(idxV0FromCascade) );\r
642                 aodV0          = dynamic_cast<AliAODv0*>    ( aodV0Refs   ->At(idxV0FromCascade) );\r
643                  \r
644                 // - Treatment of the parent for such a "re-used" V0 :\r
645                 // Insert the cascade that reuses the V0 vertex in the lineage chain\r
646                 // Before : vV0 -> vCascade1 -> vPrimary\r
647                 //  - Hyp : cascade2 uses the same V0 as cascade1\r
648                 //  After :  vV0 -> vCascade2 -> vCascade1 -> vPrimary\r
649                 \r
650                 AliAODVertex *vCascadePreviousParent = dynamic_cast<AliAODVertex*> (vV0FromCascade->GetParent());\r
651                         vV0FromCascade->SetParent(vCascade);\r
652                         vCascade      ->SetParent(vCascadePreviousParent);\r
653 \r
654                 if(fDebug > 2)  \r
655                         printf("---- Cascade / Lineage insertion\n"\r
656                                 "Parent of V0 vtx                 = Cascade vtx %p\n"\r
657                                 "Parent of the cascade vtx        = Cascade vtx %p\n"\r
658                                 "Parent of the parent cascade vtx = Cascade vtx %p\n", \r
659                                                 static_cast<void*> (vV0FromCascade->GetParent()),\r
660                                                 static_cast<void*> (vCascade->GetParent()),\r
661                                                 static_cast<void*> (vCascadePreviousParent->GetParent()) );\r
662                 \r
663         }// end if V0 structure already used\r
664 \r
665         if (fDebug > 2) {\r
666                 printf("---- Cascade / V0 vertex: \n");\r
667                 vV0FromCascade->Print();\r
668         }\r
669 \r
670         if (fDebug > 4) {\r
671                 printf("---- Cascade / pos dghter : \n");\r
672                         aodTrack->Print();\r
673                 printf("---- Cascade / neg dghter : \n");\r
674                         aodTrack->Print();\r
675                 printf("---- Cascade / aodV0 : \n");\r
676                         aodV0->Print();\r
677         }\r
678 \r
679         // In any case (used V0 or not), add the V0 vertex to the cascade one.\r
680         vCascade->AddDaughter(vV0FromCascade);  \r
681         \r
682                 \r
683         // 5 - Add the primary track of the cascade (if any)\r
684 \r
685 \r
686         // 6 - Add the cascade to the AOD array of cascades\r
687 \r
688         Double_t dcaBachToPrimVertexXY = TMath::Abs(esdCascadeBach->GetD(esd->GetPrimaryVertex()->GetX(),\r
689                                                                          esd->GetPrimaryVertex()->GetY(),\r
690                                                                          esd->GetMagneticField())        );\r
691 \r
692         esdCascade->GetBPxPyPz(momBachAtCascadeVtx[0], momBachAtCascadeVtx[1], momBachAtCascadeVtx[2]);\r
693 \r
694         aodCascade = new(cascades[jCascades++]) AliAODcascade(  vCascade,\r
695                                                                 esdCascade->Charge(),\r
696                                                                 esdCascade->GetDcaXiDaughters(),\r
697                                                                 -999.,\r
698                 // DCAXiToPrimVtx -> needs to be calculated   ----|\r
699                 // doesn't exist at ESD level;\r
700                 // See AODcascade::DcaXiToPrimVertex(Double, Double, Double)\r
701                                                                 dcaBachToPrimVertexXY,\r
702                                                                 momBachAtCascadeVtx,\r
703                                                                 *aodV0);\r
704         \r
705         if (fDebug > 3) {\r
706                 printf("---- Cascade / AOD cascade : \n\n");\r
707                 aodCascade->PrintXi(primary->GetX(), primary->GetY(), primary->GetZ());\r
708         }\r
709 \r
710     } // end of the loop on cascades\r
711 \r
712     cascades.Expand(jCascades);\r
713 \r
714 \r
715     //\r
716     // V0s\r
717     //\r
718     \r
719     for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {\r
720         \r
721         if (usedV0[nV0]) continue; // skip if already added to the AOD\r
722         \r
723         AliESDv0 *v0 = esd->GetV0(nV0);\r
724         Int_t posFromV0 = v0->GetPindex();\r
725         Int_t negFromV0 = v0->GetNindex();\r
726         \r
727         // V0 selection \r
728         //\r
729         AliESDVertex *esdVtx   = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
730         AliESDtrack  *esdV0Pos = esd->GetTrack(posFromV0);\r
731         AliESDtrack  *esdV0Neg = esd->GetTrack(negFromV0);\r
732         TList v0objects;\r
733         v0objects.AddAt(v0,                      0);\r
734         v0objects.AddAt(esdV0Pos,                1);\r
735         v0objects.AddAt(esdV0Neg,                2);\r
736         v0objects.AddAt(esdVtx,                  3);\r
737         UInt_t selectV0 = 0;\r
738         if (fV0Filter) {\r
739           selectV0 = fV0Filter->IsSelected(&v0objects);\r
740           // this is a little awkward but otherwise the \r
741           // list wants to access the pointer (delete it) \r
742           // again when going out of scope\r
743           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
744           esdVtx = 0;\r
745           if (!selectV0) \r
746             continue;\r
747         }\r
748         else{\r
749           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
750           esdVtx = 0;\r
751         }\r
752     \r
753         v0->GetXYZ(pos[0], pos[1], pos[2]);\r
754 \r
755         if (!old) {\r
756             chi2 = v0->GetChi2V0(); // = chi2/NDF since NDF = 2*2-3\r
757             v0->GetPosCov(covVtx);\r
758         } else {\r
759             chi2 = -999.;\r
760             for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
761         }\r
762 \r
763 \r
764         AliAODVertex * vV0 = \r
765           new(vertices[jVertices++]) AliAODVertex(pos,\r
766                                                   covVtx,\r
767                                                   chi2,\r
768                                                   primary,\r
769                                                   nV0,\r
770                                                   AliAODVertex::kV0);\r
771         primary->AddDaughter(vV0);\r
772         \r
773 \r
774         // Add the positive tracks from the V0\r
775         \r
776         esdV0Pos->GetPxPyPz(momPos);\r
777         esdV0Pos->GetXYZ(pos);\r
778         esdV0Pos->GetCovarianceXYZPxPyPz(covTr);\r
779         esdV0Pos->GetESDpid(pid);\r
780         \r
781         if (!usedTrack[posFromV0]) {\r
782             usedTrack[posFromV0] = kTRUE;\r
783             UInt_t selectInfo = 0;\r
784             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Pos);\r
785             if(mcH)mcH->SelectParticle(esdV0Pos->GetLabel());\r
786             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Pos->GetID(),\r
787                                                           esdV0Pos->GetLabel(), \r
788                                                           momPos, \r
789                                                           kTRUE,\r
790                                                           pos,\r
791                                                           kFALSE,\r
792                                                           covTr, \r
793                                                           (Short_t)esdV0Pos->GetSign(),\r
794                                                           esdV0Pos->GetITSClusterMap(), \r
795                                                           pid,\r
796                                                           vV0,\r
797                                                           kTRUE,  // check if this is right\r
798                                                           vtx->UsesTrack(esdV0Pos->GetID()),\r
799                                                           AliAODTrack::kSecondary,\r
800                                                           selectInfo);\r
801             aodTrack->SetTPCClusterMap(esdV0Pos->GetTPCClusterMap());\r
802             aodTrack->SetTPCSharedMap (esdV0Pos->GetTPCSharedMap());\r
803             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Pos));\r
804             aodTrackRefs->AddAt(aodTrack,posFromV0);\r
805             //      if (fDebug > 0) printf("-------------------Bo: pos track from original pt %.3f \n",aodTrack->Pt());\r
806             if (esdV0Pos->GetSign() > 0) nPosTracks++;\r
807             aodTrack->ConvertAliPIDtoAODPID();\r
808             aodTrack->SetFlags(esdV0Pos->GetStatus());\r
809             SetAODPID(esdV0Pos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
810         }\r
811         else {\r
812             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(posFromV0));\r
813             //      if (fDebug > 0) printf("-------------------Bo pos track from refArray pt %.3f \n",aodTrack->Pt());\r
814         }\r
815         vV0->AddDaughter(aodTrack);\r
816     \r
817         // Add the negative tracks from the V0\r
818         \r
819         esdV0Neg->GetPxPyPz(momNeg);\r
820         esdV0Neg->GetXYZ(pos);\r
821         esdV0Neg->GetCovarianceXYZPxPyPz(covTr);\r
822         esdV0Neg->GetESDpid(pid);\r
823         \r
824         if (!usedTrack[negFromV0]) {\r
825             usedTrack[negFromV0] = kTRUE;\r
826             UInt_t selectInfo = 0;\r
827             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Neg);\r
828             if(mcH)mcH->SelectParticle(esdV0Neg->GetLabel());\r
829             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Neg->GetID(),\r
830                                                           esdV0Neg->GetLabel(),\r
831                                                           momNeg,\r
832                                                           kTRUE,\r
833                                                           pos,\r
834                                                           kFALSE,\r
835                                                           covTr, \r
836                                                           (Short_t)esdV0Neg->GetSign(),\r
837                                                           esdV0Neg->GetITSClusterMap(), \r
838                                                           pid,\r
839                                                           vV0,\r
840                                                           kTRUE,  // check if this is right\r
841                                                           vtx->UsesTrack(esdV0Neg->GetID()),\r
842                                                           AliAODTrack::kSecondary,\r
843                                                           selectInfo);\r
844             aodTrack->SetTPCClusterMap(esdV0Neg->GetTPCClusterMap());\r
845             aodTrack->SetTPCSharedMap (esdV0Neg->GetTPCSharedMap());\r
846             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Neg));\r
847             \r
848             aodTrackRefs->AddAt(aodTrack,negFromV0);\r
849             //      if (fDebug > 0) printf("-------------------Bo: neg track from original pt %.3f \n",aodTrack->Pt());\r
850             if (esdV0Neg->GetSign() > 0) nPosTracks++;\r
851             aodTrack->ConvertAliPIDtoAODPID();\r
852             aodTrack->SetFlags(esdV0Neg->GetStatus());\r
853             SetAODPID(esdV0Neg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
854         }\r
855         else {\r
856             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(negFromV0));\r
857             //      if (fDebug > 0) printf("-------------------Bo neg track from refArray pt %.3f \n",aodTrack->Pt());\r
858         }\r
859         vV0->AddDaughter(aodTrack);\r
860 \r
861 \r
862         // Add the V0 the V0 array as well\r
863         \r
864         Double_t  dcaV0Daughters      = v0->GetDcaV0Daughters();\r
865         Double_t  dcaV0ToPrimVertex   = v0->GetD(esd->GetPrimaryVertex()->GetX(),\r
866                                                  esd->GetPrimaryVertex()->GetY(),\r
867                                                  esd->GetPrimaryVertex()->GetZ());\r
868         v0->GetPPxPyPz(momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2]); \r
869         v0->GetNPxPyPz(momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2]); \r
870         \r
871         Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
872         dcaDaughterToPrimVertex[0] = TMath::Abs(esdV0Pos->GetD(  esd->GetPrimaryVertex()->GetX(),\r
873                                                                  esd->GetPrimaryVertex()->GetY(),\r
874                                                                         esd->GetMagneticField()) );\r
875         dcaDaughterToPrimVertex[1] = TMath::Abs(esdV0Neg->GetD(  esd->GetPrimaryVertex()->GetX(),\r
876                                                                  esd->GetPrimaryVertex()->GetY(),\r
877                                                                         esd->GetMagneticField()) );\r
878         \r
879         aodV0 = new(v0s[jV0s++]) AliAODv0(vV0, \r
880                                         dcaV0Daughters,\r
881                                         dcaV0ToPrimVertex,\r
882                                         momPosAtV0vtx,\r
883                                         momNegAtV0vtx,\r
884                                         dcaDaughterToPrimVertex);\r
885 \r
886         // set the aod v0 on-the-fly status\r
887         aodV0->SetOnFlyStatus(v0->GetOnFlyStatus());\r
888     }//End of loop on V0s \r
889 \r
890     v0s.Expand(jV0s);    \r
891 \r
892     if (fDebug > 0)   printf("   NAODCascades=%d / NAODV0s=%d\n", jCascades, jV0s);\r
893     // end of V0 parts\r
894 \r
895 \r
896     // Kinks: it is a big mess the access to the information in the kinks\r
897     // The loop is on the tracks in order to find the mother and daugther of each kink\r
898     \r
899     \r
900     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {\r
901         \r
902         AliESDtrack * esdTrack = esd->GetTrack(iTrack);\r
903         \r
904         Int_t ikink = esdTrack->GetKinkIndex(0);\r
905         \r
906         if (ikink && nKinks) {\r
907             // Negative kink index: mother, positive: daughter\r
908             \r
909             // Search for the second track of the kink\r
910             \r
911             for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {\r
912                 \r
913                 AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);\r
914                 \r
915                 Int_t jkink = esdTrack1->GetKinkIndex(0);\r
916                 \r
917                 if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {\r
918                     \r
919                     // The two tracks are from the same kink\r
920                     \r
921                     if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks\r
922                     \r
923                     Int_t imother = -1;\r
924                     Int_t idaughter = -1;\r
925                     \r
926                     if (ikink<0 && jkink>0) {\r
927                         \r
928                         imother = iTrack;\r
929                         idaughter = jTrack;\r
930                     }\r
931                     else if (ikink>0 && jkink<0) {\r
932                         \r
933                         imother = jTrack;\r
934                         idaughter = iTrack;\r
935                     }\r
936                     else {\r
937 //                      cerr << "Error: Wrong combination of kink indexes: "\r
938 //                           << ikink << " " << jkink << endl;\r
939                         continue;\r
940                     }\r
941                     \r
942                     // Add the mother track if it passed primary track selection cuts\r
943                     \r
944                     AliAODTrack * mother = NULL;\r
945                     \r
946                     UInt_t selectInfo = 0;\r
947                     if (fTrackFilter) {\r
948                         selectInfo = fTrackFilter->IsSelected(esd->GetTrack(imother));\r
949                         if (!selectInfo) continue;\r
950                     }\r
951                     \r
952                     if (!usedTrack[imother]) {\r
953                         \r
954                         usedTrack[imother] = kTRUE;\r
955                         \r
956                         AliESDtrack *esdTrackM = esd->GetTrack(imother);\r
957                         esdTrackM->GetPxPyPz(p);\r
958                         esdTrackM->GetXYZ(pos);\r
959                         esdTrackM->GetCovarianceXYZPxPyPz(covTr);\r
960                         esdTrackM->GetESDpid(pid);\r
961                         if(mcH)mcH->SelectParticle(esdTrackM->GetLabel());\r
962                         mother = \r
963                             new(tracks[jTracks++]) AliAODTrack(esdTrackM->GetID(),\r
964                                                                esdTrackM->GetLabel(),\r
965                                                                p,\r
966                                                                kTRUE,\r
967                                                                pos,\r
968                                                                kFALSE,\r
969                                                                covTr, \r
970                                                                (Short_t)esdTrackM->GetSign(),\r
971                                                                esdTrackM->GetITSClusterMap(), \r
972                                                                pid,\r
973                                                                primary,\r
974                                                                kTRUE, // check if this is right\r
975                                                                vtx->UsesTrack(esdTrack->GetID()),\r
976                                                                AliAODTrack::kPrimary,\r
977                                                                selectInfo);\r
978                         mother->SetTPCClusterMap(esdTrackM->GetTPCClusterMap());\r
979                         mother->SetTPCSharedMap (esdTrackM->GetTPCSharedMap());\r
980                         mother->SetChi2perNDF(Chi2perNDF(esdTrackM));\r
981 \r
982                         aodTrackRefs->AddAt(mother, imother);\r
983                         \r
984                         if (esdTrackM->GetSign() > 0) nPosTracks++;\r
985                         mother->SetFlags(esdTrackM->GetStatus());\r
986                         mother->ConvertAliPIDtoAODPID();\r
987                         primary->AddDaughter(mother);\r
988                         mother->ConvertAliPIDtoAODPID();\r
989                         SetAODPID(esdTrackM,mother,detpid,timezero,esd->GetMagneticField());\r
990                     }\r
991                     else {\r
992 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
993 //                           << " track " << imother << " has already been used!" << endl;\r
994                   }\r
995                     \r
996                     // Add the kink vertex\r
997                     AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);\r
998                     \r
999                     AliAODVertex * vkink = \r
1000                         new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),\r
1001                                                                 NULL,\r
1002                                                                 0.,\r
1003                                                                 mother,\r
1004                                                                 esdTrack->GetID(),  // This is the track ID of the mother's track!\r
1005                                                                 AliAODVertex::kKink);\r
1006                     // Add the daughter track\r
1007                   \r
1008                     AliAODTrack * daughter = NULL;\r
1009                     \r
1010                     if (!usedTrack[idaughter]) {\r
1011                         \r
1012                         usedTrack[idaughter] = kTRUE;\r
1013                         \r
1014                         AliESDtrack *esdTrackD = esd->GetTrack(idaughter);\r
1015                         esdTrackD->GetPxPyPz(p);\r
1016                         esdTrackD->GetXYZ(pos);\r
1017                         esdTrackD->GetCovarianceXYZPxPyPz(covTr);\r
1018                         esdTrackD->GetESDpid(pid);\r
1019                         selectInfo = 0;\r
1020                         if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrackD);\r
1021                         if(mcH)mcH->SelectParticle(esdTrackD->GetLabel());\r
1022                         daughter = \r
1023                             new(tracks[jTracks++]) AliAODTrack(esdTrackD->GetID(),\r
1024                                                                esdTrackD->GetLabel(),\r
1025                                                                p,\r
1026                                                                kTRUE,\r
1027                                                                pos,\r
1028                                                                kFALSE,\r
1029                                                                covTr, \r
1030                                                                (Short_t)esdTrackD->GetSign(),\r
1031                                                                esdTrackD->GetITSClusterMap(), \r
1032                                                                pid,\r
1033                                                                vkink,\r
1034                                                                kTRUE, // check if this is right\r
1035                                                                vtx->UsesTrack(esdTrack->GetID()),\r
1036                                                                AliAODTrack::kSecondary,\r
1037                                                                selectInfo);\r
1038                         daughter->SetTPCClusterMap(esdTrackD->GetTPCClusterMap());\r
1039                         daughter->SetTPCSharedMap (esdTrackD->GetTPCSharedMap());\r
1040                         aodTrackRefs->AddAt(daughter, idaughter);\r
1041                         \r
1042                         if (esdTrackD->GetSign() > 0) nPosTracks++;\r
1043                         daughter->SetFlags(esdTrackD->GetStatus());\r
1044                         daughter->ConvertAliPIDtoAODPID();\r
1045                         vkink->AddDaughter(daughter);\r
1046                         daughter->ConvertAliPIDtoAODPID();\r
1047                        SetAODPID(esdTrackD,daughter,detpid,timezero,esd->GetMagneticField());\r
1048                     }\r
1049                     else {\r
1050 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
1051 //                           << " track " << idaughter << " has already been used!" << endl;\r
1052                     }\r
1053                 }\r
1054             }\r
1055         }      \r
1056     }\r
1057     \r
1058   \r
1059     // Tracks (primary and orphan)\r
1060 \r
1061     if (fDebug > 0) printf("NUMBER OF ESD TRACKS %5d\n", nTracks);\r
1062     \r
1063     for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {\r
1064         \r
1065         \r
1066         if (usedTrack[nTrack]) continue;\r
1067 \r
1068         AliESDtrack *esdTrack = esd->GetTrack(nTrack);\r
1069         UInt_t selectInfo = 0;\r
1070         //\r
1071         // Track selection\r
1072         if (fTrackFilter) {\r
1073             selectInfo = fTrackFilter->IsSelected(esdTrack);\r
1074             if (!selectInfo && !vtx->UsesTrack(esdTrack->GetID())) continue;\r
1075         }\r
1076         \r
1077         //\r
1078         esdTrack->GetPxPyPz(p);\r
1079         esdTrack->GetXYZ(pos);\r
1080         esdTrack->GetCovarianceXYZPxPyPz(covTr);\r
1081         esdTrack->GetESDpid(pid);\r
1082         if(mcH)mcH->SelectParticle(esdTrack->GetLabel());\r
1083         primary->AddDaughter(aodTrack =\r
1084                              new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),\r
1085                                                                 esdTrack->GetLabel(),\r
1086                                                                 p,\r
1087                                                                 kTRUE,\r
1088                                                                 pos,\r
1089                                                                 kFALSE,\r
1090                                                                 covTr, \r
1091                                                                 (Short_t)esdTrack->GetSign(),\r
1092                                                                 esdTrack->GetITSClusterMap(), \r
1093                                                                 pid,\r
1094                                                                 primary,\r
1095                                                                 kTRUE, // check if this is right\r
1096                                                                 vtx->UsesTrack(esdTrack->GetID()),\r
1097                                                                 AliAODTrack::kPrimary, \r
1098                                                                 selectInfo)\r
1099                              );\r
1100         aodTrack->SetTPCClusterMap(esdTrack->GetTPCClusterMap());\r
1101         aodTrack->SetTPCSharedMap (esdTrack->GetTPCSharedMap());\r
1102         aodTrack->SetChi2perNDF(Chi2perNDF(esdTrack));\r
1103 \r
1104         aodTrackRefs->AddAt(aodTrack, nTrack);\r
1105 \r
1106         \r
1107         if (esdTrack->GetSign() > 0) nPosTracks++;\r
1108         aodTrack->SetFlags(esdTrack->GetStatus());\r
1109         aodTrack->ConvertAliPIDtoAODPID();\r
1110         SetAODPID(esdTrack,aodTrack,detpid,timezero,esd->GetMagneticField());\r
1111     } // end of loop on tracks\r
1112     \r
1113     // Update number of AOD tracks in header at the end of track loop (M.G.)\r
1114     header->SetRefMultiplicity(jTracks);\r
1115     header->SetRefMultiplicityPos(nPosTracks);\r
1116     header->SetRefMultiplicityNeg(jTracks - nPosTracks);\r
1117     if (fDebug > 0) \r
1118       printf("   NAODTRACKS=%d  NPOS=%d  NNEG=%d\n", jTracks, nPosTracks, jTracks - nPosTracks);\r
1119     // Do not shrink the array of tracks - other filters may add to it (M.G)\r
1120     //   tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks\r
1121   \r
1122     // Access to the AOD container of PMD clusters\r
1123     TClonesArray &pmdClusters = *(AODEvent()->GetPmdClusters());\r
1124     Int_t jPmdClusters=0;\r
1125   \r
1126     for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {\r
1127       // file pmd clusters, to be revised!\r
1128       AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);\r
1129       Int_t nLabel = 0;\r
1130       Int_t *label = 0x0;\r
1131       Double_t posPmd[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ()};\r
1132       Double_t pidPmd[13] = { 0.}; // to be revised!\r
1133       // type not set!\r
1134       // assoc cluster not set\r
1135       new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), posPmd, pidPmd);\r
1136     }\r
1137 \r
1138     // Access to the AOD container of clusters\r
1139     TClonesArray &caloClusters = *(AODEvent()->GetCaloClusters());\r
1140     Int_t jClusters=0;\r
1141  \r
1142     for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {\r
1143 \r
1144       AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);\r
1145 \r
1146       Int_t id        = cluster->GetID();\r
1147       Int_t nLabel    = cluster->GetNLabels();\r
1148       TArrayI* labels = cluster->GetLabels();\r
1149       Int_t *label = 0;\r
1150       if (labels){\r
1151         label = (cluster->GetLabels())->GetArray();\r
1152         for(int i = 0;i < labels->GetSize();++i){\r
1153           if(mcH)mcH->SelectParticle(label[i]);\r
1154         }\r
1155       }     \r
1156 \r
1157       Float_t energy = cluster->E();\r
1158       cluster->GetPosition(posF);\r
1159       Char_t ttype = AliAODCluster::kUndef; \r
1160 \r
1161       if (cluster->GetClusterType() == AliESDCaloCluster::kPHOSCluster) {\r
1162         ttype=AliAODCluster::kPHOSNeutral;\r
1163       } \r
1164       else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALClusterv1) {\r
1165         ttype = AliAODCluster::kEMCALClusterv1;\r
1166       }\r
1167 \r
1168       \r
1169       AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,\r
1170                                                                                         nLabel,\r
1171                                                                                         label,\r
1172                                                                                         energy,\r
1173                                                                                         posF,\r
1174                                                                                         NULL,\r
1175                                                                                         ttype);\r
1176       \r
1177       caloCluster->SetCaloCluster(cluster->GetDistanceToBadChannel(),\r
1178                                   cluster->GetClusterDisp(),\r
1179                                   cluster->GetM20(), cluster->GetM02(),\r
1180                                   cluster->GetEmcCpvDistance(),  \r
1181                                   cluster->GetNExMax(),cluster->GetTOF()) ;\r
1182 \r
1183       caloCluster->SetPIDFromESD(cluster->GetPid());\r
1184       caloCluster->SetNCells(cluster->GetNCells());\r
1185       caloCluster->SetCellsAbsId(cluster->GetCellsAbsId());\r
1186       caloCluster->SetCellsAmplitudeFraction(cluster->GetCellsAmplitudeFraction());\r
1187 \r
1188       TArrayI* matchedT =       cluster->GetTracksMatched();\r
1189       if (nTracks>0 && matchedT && cluster->GetTrackMatched() >= 0) {   \r
1190         for (Int_t im = 0; im < matchedT->GetSize(); im++) {\r
1191             Int_t iESDtrack = matchedT->At(im);;\r
1192             if (aodTrackRefs->At(iESDtrack) != 0) {\r
1193                 caloCluster->AddTrackMatched((AliAODTrack*)aodTrackRefs->At(iESDtrack));\r
1194             }\r
1195         }\r
1196       }\r
1197       \r
1198     } \r
1199     caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters    \r
1200     // end of loop on calo clusters\r
1201 \r
1202     // fill EMCAL cell info\r
1203     if (esd->GetEMCALCells()) { // protection against missing ESD information\r
1204       AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());\r
1205       Int_t nEMcell = esdEMcells.GetNumberOfCells() ;\r
1206       \r
1207       AliAODCaloCells &aodEMcells = *(AODEvent()->GetEMCALCells());\r
1208       aodEMcells.CreateContainer(nEMcell);\r
1209       aodEMcells.SetType(AliAODCaloCells::kEMCAL);\r
1210       for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      \r
1211         aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));\r
1212       }\r
1213       aodEMcells.Sort();\r
1214     }\r
1215 \r
1216     // fill PHOS cell info\r
1217     if (esd->GetPHOSCells()) { // protection against missing ESD information\r
1218       AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());\r
1219       Int_t nPHcell = esdPHcells.GetNumberOfCells() ;\r
1220       \r
1221       AliAODCaloCells &aodPHcells = *(AODEvent()->GetPHOSCells());\r
1222       aodPHcells.CreateContainer(nPHcell);\r
1223       aodPHcells.SetType(AliAODCaloCells::kPHOS);\r
1224       for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      \r
1225         aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));\r
1226       }\r
1227       aodPHcells.Sort();\r
1228     }\r
1229 \r
1230     // tracklets    \r
1231     AliAODTracklets &SPDTracklets = *(AODEvent()->GetTracklets());\r
1232     const AliMultiplicity *mult = esd->GetMultiplicity();\r
1233     if (mult) {\r
1234       if (mult->GetNumberOfTracklets()>0) {\r
1235         SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());\r
1236 \r
1237         for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {\r
1238           if(mcH){\r
1239             mcH->SelectParticle(mult->GetLabel(n, 0));\r
1240             mcH->SelectParticle(mult->GetLabel(n, 1));\r
1241           }\r
1242           SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n, 0),mult->GetLabel(n, 1));\r
1243         }\r
1244       }\r
1245     } else {\r
1246       //Printf("ERROR: AliMultiplicity could not be retrieved from ESD");\r
1247     }\r
1248 \r
1249     delete [] usedKink;\r
1250     delete [] usedV0;\r
1251     delete [] usedTrack;    \r
1252     delete    aodV0Refs;\r
1253     delete    aodV0VtxRefs;\r
1254     delete    aodTrackRefs;\r
1255 \r
1256     return;\r
1257 }\r
1258 \r
1259 \r
1260 void AliAnalysisTaskESDfilter::SetAODPID(AliESDtrack *esdtrack, AliAODTrack *aodtrack, AliAODPid *detpid, Double_t timezero, Double_t bfield)\r
1261 {\r
1262   //\r
1263   // Setter for the raw PID detector signals\r
1264   //\r
1265 \r
1266   // Save PID object for candidate electrons\r
1267     Bool_t pidSave = kFALSE;\r
1268     if (fTrackFilter) {\r
1269         Bool_t selectInfo = fTrackFilter->IsSelected((char*) "Electrons");\r
1270         if (selectInfo)  pidSave = kTRUE;\r
1271     }\r
1272 \r
1273 \r
1274     // Tracks passing pt cut \r
1275     if(esdtrack->Pt()>fHighPthreshold) {\r
1276         pidSave = kTRUE;\r
1277     } else {\r
1278         if(fPtshape){\r
1279             if(esdtrack->Pt()> fPtshape->GetXmin()){\r
1280                 Double_t y = fPtshape->Eval(esdtrack->Pt())/fPtshape->Eval(fHighPthreshold);\r
1281                 if(gRandom->Rndm(0)<1./y){\r
1282                     pidSave = kTRUE;\r
1283                 }//end rndm\r
1284             }//end if p < pmin\r
1285         }//end if p function\r
1286     }// end else\r
1287 \r
1288     if (pidSave) {\r
1289       if(!aodtrack->GetDetPid()){// prevent memory leak when calling SetAODPID twice for the same track\r
1290         detpid = new AliAODPid();\r
1291         SetDetectorRawSignals(detpid,esdtrack,timezero, bfield);\r
1292         aodtrack->SetDetPID(detpid);\r
1293       }\r
1294     }\r
1295 }\r
1296 \r
1297 void AliAnalysisTaskESDfilter::SetDetectorRawSignals(AliAODPid *aodpid, AliESDtrack *track, Double_t timezero, Double_t bfield)\r
1298 {\r
1299 //\r
1300 //assignment of the detector signals (AliXXXesdPID inspired)\r
1301 //\r
1302  if(!track){\r
1303  AliInfo("no ESD track found. .....exiting");\r
1304  return;\r
1305  }\r
1306  // TPC momentum\r
1307  const AliExternalTrackParam *in=track->GetInnerParam();\r
1308  if (in) {\r
1309    aodpid->SetTPCmomentum(in->GetP());\r
1310  }else{\r
1311    aodpid->SetTPCmomentum(-1.);\r
1312  }\r
1313 \r
1314 \r
1315  aodpid->SetITSsignal(track->GetITSsignal());\r
1316  aodpid->SetTPCsignal(track->GetTPCsignal());\r
1317 \r
1318  //n TRD planes = 6\r
1319  Int_t nslices = track->GetNumberOfTRDslices()*6;\r
1320  Double_t *trdslices = new Double_t[nslices];\r
1321  for(Int_t iSl =0; iSl < track->GetNumberOfTRDslices(); iSl++) {\r
1322    for(Int_t iPl =0; iPl<6; iPl++) trdslices[iPl*track->GetNumberOfTRDslices()+iSl] = track->GetTRDslice(iPl,iSl);\r
1323  }\r
1324  \r
1325 //TRD momentum\r
1326  for(Int_t iPl=0;iPl<6;iPl++){\r
1327    Double_t trdmom=track->GetTRDmomentum(iPl);\r
1328    aodpid->SetTRDmomentum(iPl,trdmom);\r
1329  }\r
1330 \r
1331  aodpid->SetTRDsignal(track->GetNumberOfTRDslices()*6,trdslices);\r
1332  Double_t times[AliAODPid::kSPECIES]; track->GetIntegratedTimes(times);\r
1333  aodpid->SetIntegratedTimes(times);\r
1334 \r
1335  aodpid->SetTOFsignal(track->GetTOFsignal()-timezero); // to be fixed\r
1336  aodpid->SetHMPIDsignal(track->GetHMPIDsignal());\r
1337 \r
1338  //Extrapolate track to EMCAL surface for AOD-level track-cluster matching\r
1339  Double_t emcpos[3] = {0.,0.,0.};\r
1340  Double_t emcmom[3] = {0.,0.,0.};\r
1341  aodpid->SetEMCALPosition(emcpos);\r
1342  aodpid->SetEMCALMomentum(emcmom);\r
1343 \r
1344  AliExternalTrackParam *outerparam = (AliExternalTrackParam*)track->GetOuterParam();\r
1345  if(!outerparam) return;\r
1346 \r
1347  //To be replaced by call to AliEMCALGeoUtils when the class becomes available\r
1348  Double_t radius = 441.0; //[cm] EMCAL radius +13cm\r
1349 \r
1350  Bool_t okpos = outerparam->GetXYZAt(radius,bfield,emcpos);\r
1351  Bool_t okmom = outerparam->GetPxPyPzAt(radius,bfield,emcmom);\r
1352  if(!(okpos && okmom)) return;\r
1353 \r
1354  aodpid->SetEMCALPosition(emcpos);\r
1355  aodpid->SetEMCALMomentum(emcmom);\r
1356 \r
1357 }\r
1358 \r
1359 Double_t  AliAnalysisTaskESDfilter::Chi2perNDF(AliESDtrack* track)\r
1360 {\r
1361     // Calculate chi2 per ndf for track\r
1362     Int_t  nClustersTPC = track->GetTPCNcls();\r
1363 \r
1364     if ( nClustersTPC > 5) {\r
1365        return (track->GetTPCchi2()/Float_t(nClustersTPC - 5));\r
1366     } else {\r
1367        return (-1.);\r
1368     }\r
1369  }\r
1370 \r
1371 \r
1372 \r
1373 void AliAnalysisTaskESDfilter::Terminate(Option_t */*option*/)\r
1374 {\r
1375 // Terminate analysis\r
1376 //\r
1377     if (fDebug > 1) printf("AnalysisESDfilter: Terminate() \n");\r
1378 }\r
1379 \r
1380 void  AliAnalysisTaskESDfilter::PrintMCInfo(AliStack *pStack,Int_t label){\r
1381   if(!pStack)return;\r
1382   label = TMath::Abs(label);\r
1383   TParticle *part = pStack->Particle(label);\r
1384   Printf("########################");\r
1385   Printf("%s:%d %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,label,part->GetUniqueID(),part->GetPdgCode(),part->P());\r
1386   part->Print();\r
1387   TParticle* mother = part;\r
1388   Int_t imo = part->GetFirstMother();\r
1389   Int_t nprim = pStack->GetNprimary();\r
1390   //  while((imo >= nprim) && (mother->GetUniqueID() == 4)) {\r
1391   while((imo >= nprim)) {\r
1392     mother =  pStack->Particle(imo);\r
1393     Printf("Mother %s:%d Label %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,imo,mother->GetUniqueID(),mother->GetPdgCode(),mother->P());\r
1394     mother->Print();\r
1395     imo =  mother->GetFirstMother();\r
1396   }\r
1397   Printf("########################");\r
1398 }\r