PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kTRUE;  // switch of AOD filling for on the fly analysis
  35 Bool_t      kFilterAOD = kTRUE;
  36 Float_t     kJetTriggerPtCut = 20; // pT for jet trigger in case of iFilter==2
  37 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  38 //== general input and output variables
  39
  40 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  41 Int_t       iFilterAnalysis       = 0;      // Analysis on input AOD's
  42 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  43 Int_t       iCentralitySelection  = 0;      // Use the centrality
  44 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  45 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  46 UInt_t      iPhysicsSelectionFlag = 1; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  47 Bool_t      useTender           = kFALSE; // use tender wagon
  48 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  49 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  50 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  51 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  52
  53
  54 //== general process variables
  55
  56 // ### Other flags to steer the analysis
  57 //==============================================================================
  58 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  59 Bool_t      kUseDate            = kFALSE; // use date in train name
  60 Bool_t      kUseDebug           = kTRUE; // activate debugging
  61 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  62 // From TError.h:
  63 // const Int_t kUnset    =  -1;
  64 // const Int_t kPrint    =   0;
  65 // const Int_t kInfo     =   1000;
  66 // const Int_t kWarning  =   2000;
  67 // const Int_t kError    =   3000;
  68 // const Int_t kBreak    =   4000;
  69 // const Int_t kSysError =   5000;
  70 // const Int_t kFatal    =   6000;
  71 Int_t         kUseSysInfo         = 0; // activate debugging
  72 Long64_t    kNumberOfEvents     = 1234567890; // Number of events to process from the chain
  73 Bool_t      kUseMC              = kTRUE;  // use MC info
  74 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  75 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  76 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  77 Bool_t      kUseTR              = kFALSE;  // use track references
  78 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  79 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  80 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  81
  82
  83 // ### Analysis modules to be included. Some may not be yet fully implemented.
  84 //==============================================================================
  85 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  86 Int_t       iJETSUBTRACT        = 1;      // Jet background subtration
  87 TList       kJetListSpectrum;             // list of jets contains TObjString of possible jet finder names
  88 TExMap      kJetMapSpectrum;             // Maps the jet finder pairs to be used in the spectrum task second number negative no pair other wise (j1+1) + (1000 * (j2+1)) +10000 * (j3+1)
  89 TExMap      kJetBackMapSpectrum;             // Maps the jet finder pairs with the background branch used, just for countint of trackrefs
  90 Int_t       kJetMapOffset[3] = {10000,100,1};
  91 TString     kDefaultJetBranch     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  92 TString     kDefaultJetBackgroundBranch            = "";      // is currently set when filled (jet clsuters
  93 TString     kDefaultJetBackgroundBranchCut1        = "";      // is currently set when filled (jet clsuters
  94 TString     kDefaultJetBackgroundBranchCut2        = "";      // is currently set when filled (jet clsuters
  95 TString     kDefaultJetBackgroundBranch_extra     = "";      // is currently set when filled (jet clsuters)
  96 TString     kJetSubtractBranches     = "";      // is currently set when filled (jet clsuters
  97 TString     kJetSubtractBranchesCut1     = "";      // is currently set when filled (jet clsuters
  98 TString     kJetSubtractBranchesCut2     = "";      // is currently set when filled (jet clsuters
  99 TString     kJetSubtractBranches_extra     = "";      // is currently set when filled (jet clsuters
 100
 101 TString     kDefaultJetBranchMC     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 102 TString     kDefaultJetBackgroundBranchMC     = "";      // is currently set when filled (jet clsuters
 103 TString     kDefaultJetBranchMC2     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 104 TString     kDefaultJetBackgroundBranchMC2     = "";      // is currently set when filled (jet clsuters
 105 TString     kJetSubtractMask1 = "B0";
 106 TString     kJetSubtractMask2 = "B%d";
 107 Int_t       iDIJETAN           = 1;
 108 Int_t       iJETANLib          = 1;
 109 Int_t       iPWGPPQASym         = 0;      // Eva's QA task compiled on the fly...
 110 Int_t       iPWG4FastEmbedding = 0;      // Generate non-standard AOD for embedding
 111 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
 112 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
 113 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
 114 Int_t       iPWG4JetResponse   = 0;      // jet response matrix
 115 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
 116 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
 117 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
 118 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
 119 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
 120 Int_t       iPWG4Fragmentation = 1;      // Official Fragmentation
 121 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
 122 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
 123 Int_t       iPWG4PtTrackQA     = 0;      // Marta's QA tasks
 124 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
 125 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
 126 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
 127 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
 128 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
 129 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 130 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 131 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 132 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 133 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 134 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 135 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 136 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 137 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 138 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 139 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 140 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 141 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 142 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 143 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 144 TString     kDeltaAODJetNameInput   = "";
 145 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 146 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
 147 TString     kFastEmbeddingAOD  = "emb/AliAOD.root";
 148 TString     kFastEmbAODList    = "";
 149
 150 //==============================================================================
 151 // ### PROOF Steering varibales
 152 //==============================================================================
 153 //== proof setup variables
 154 TString     kProofCluster      = "alicecaf.cern.ch";
 155 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 156 TString     kProofAFversion          = "AF-v4-17";
 157 //== proof input and output variables
 158 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 159 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 160 TString     kProofOutdir       = "";
 161 Bool_t      kProofClearPackages = kFALSE;
 162 Int_t       kProofEvents = 10000;
 163 Int_t       kProofOffset = 0;
 164 //== proof process variables
 165
 166
 167 //==============================================================================
 168 // ### Grid plugin Steering varibiables
 169 //==============================================================================
 170 //== grid plugin setup variables
 171 Bool_t      kPluginUse         = kTRUE;   // do not change
 172 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 173 TString     kPluginRootVersion       = "v5-30-02";  // *CHANGE ME IF MORE RECENT IN GRID*
 174 TString     kPluginAliRootVersion    = "v4-21-01a-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 175 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 176 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 177 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 178 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 179 // TString kPluginExecutableCommand = "root -b -q";
 180 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 181
 182 // == grid plugin input and output variables
 183 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 184 Int_t         kGridMaxRunsFromList = 999999999;
 185 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 186 TString     kGridLocalRunList = "";
 187 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 188 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 189 TString     kGridExtraAliendirLevel = ""; // sub working directory not to confuse different run xmls
 190 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 191 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 192 TString     kGridPassPattern       = "";
 193 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 194 Int_t         kGridMaxMergeFiles      = 25; // Number of files merged in a chunk grid run range
 195 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 196 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 197 // == grid process variables
 198 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 199 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 200
 201 //==============================================================================
 202 // ### Local Steering variables
 203 //==============================================================================
 204 //== local setup variables
 205 //== local input and output variables
 206 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 207 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 208 // == local process variables
 209
 210 TString kPluginMode = "";
 211 TString kAnalysisMode = "";
 212
 213
 214 // Temporaries.
 215 TString anaPars = "";
 216 TString anaLibs = "";
 217 TString anaLibsExtra = "";
 218 TString anaSources = "";
 219 // Function signatures
 220 class AliAnalysisAlien;
 221 class AliAnalysisManager;
 222
 223 //______________________________________________________________________________
 224 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 225                            const char *plugin_mode="",
 226                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 227 {
 228 // Main analysis train macro. If a configuration file is provided, all parameters
 229 // are taken from there but may be altered by CheckModuleFlags.
 230
 231   // these flag may be needed by the config file
 232   kPluginMode   = plugin_mode;
 233   kAnalysisMode = analysis_mode;
 234
 235   if (strlen(config_file) && !LoadConfig(config_file)) return;
 236   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 237   if(iOffset)kGridOffsetRunFromList = iOffset;
 238   if(iOffset)kProofOffset = iOffset;
 239
 240
 241    TString smode(analysis_mode);
 242    smode.ToUpper();
 243    if (kSaveTrain)WriteConfig();
 244    // Check compatibility of selected modules
 245    CheckModuleFlags(smode);
 246    //     gROOT->ProcessLine(".trace");
 247
 248    printf("==================================================================\n");
 249    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 250    printf("==================================================================\n");
 251                               printf("=  Configuring analysis train for:                               =\n");
 252    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 253    else                     printf("=  ESD analysis                                                  =\n");
 254    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 255    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 256    if (useTender)   printf("=  Using tender                                                =\n");
 257    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 258    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 259    printf("==================================================================\n");
 260
 261    char *printMask = ":: %20s  %10d\n";
 262    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 263    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 264    printf(printMask,"MC truth", (UInt_t)kUseMC);
 265    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 266    printf(printMask,"track refs", (UInt_t)kUseTR);
 267    printf(printMask,"tags", (UInt_t)kUseESDTags);
 268    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 269    printf(printMask,"debugging", (UInt_t)kUseDebug);
 270    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 271    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 272    printf(printMask,"JETAN subtract", (UInt_t)iJETSUBTRACT);
 273    printf(printMask,"PWGPP QA sym", iPWGPPQASym);
 274    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 275    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 276    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 277    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 278    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 279    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 280    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 281    printf(printMask,"PWG4 UE",iPWG4UE);
 282    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 283    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 284    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 285    printf(printMask,"PWG4 Pt QA track",iPWG4PtTrackQA);
 286    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 287    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 288    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 289    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 290    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 291    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 292    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 293    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 294    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 295    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 296    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 297    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 298    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 299    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 300    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 301    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 302    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 303
 304    //==========================================================================
 305    // Connect to back-end system
 306    if (!Connect(smode)) {
 307       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 308       return;
 309    }
 310
 311    // Load common libraries and set include path
 312    if (!LoadCommonLibraries(smode)) {
 313       ::Error("AnalysisTrain", "Could not load common libraries");
 314       return;
 315    }
 316
 317
 318
 319
 320
 321    // Make the analysis manager and connect event handlers
 322    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 323    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 324    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 325    mgr->SetNSysInfo(0);
 326    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 327    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 328    mgr->SetSkipTerminate(kSkipTerminate);
 329
 330    // Load analysis specific libraries
 331    if (!LoadAnalysisLibraries(smode)) {
 332       ::Error("AnalysisTrain", "Could not load analysis libraries");
 333      return;
 334    }
 335
 336    gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/ConfigLegoTrainPWGJE.C");
 337    ConfigLegoTrainPWGJE(1013);
 338    // Create input handler (input container created automatically)
 339    if (iAODanalysis) {
 340    // AOD input handler
 341       AliAODInputHandler *aodH = new AliAODInputHandler();
 342       mgr->SetInputEventHandler(aodH);
 343       if (kDeltaAODJetNameInput.Length()){
 344         Printf("Adding Friend %s",kDeltaAODJetNameInput.Data());
 345         aodH->AddFriend(kDeltaAODJetNameInput.Data());
 346       }
 347       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 348    } else {
 349    // ESD input handler
 350       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 351       if (kUseESDTags) esdHandler->SetReadTags();
 352       esdHandler->SetReadFriends(kFALSE);
 353       mgr->SetInputEventHandler(esdHandler);
 354       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 355
 356    }
 357
 358
 359
 360    // Monte Carlo handler
 361    if (kUseMC && !iAODanalysis) {
 362       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 363       mgr->SetMCtruthEventHandler(mcHandler);
 364       mcHandler->SetReadTR(kUseTR);
 365    }
 366    // AOD output container, created automatically when setting an AOD handler
 367    if (iAODhandler) {
 368       // AOD output handler
 369       AliAODHandler* aodHandler   = new AliAODHandler();
 370       aodHandler->SetOutputFileName("AliAOD.root");
 371       aodHandler->SetFillAODforRun(kFillAOD);
 372       //
 373       mgr->SetOutputEventHandler(aodHandler);
 374       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 375       cout_aod->SetSpecialOutput();
 376    }
 377    // Debugging if needed
 378
 379    if (kUseDebug){
 380      mgr->SetDebugLevel(3);
 381    }
 382    if(kUseSysInfo>0){
 383      mgr->RegisterExtraFile("syswatch.root");
 384      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 385      kGridMergeExclude += "syswatch.root";
 386    }
 387    else{
 388      AliLog::SetGlobalLogLevel(AliLog::kError);
 389    }
 390
 391
 392    //==========================================================================
 393    // Create the chain. In this example it is created only from ALIEN files but
 394    // can be done to work in batch or grid mode as well.
 395    TChain *chain = CreateChain(smode, plugin_mode);
 396
 397    //==========================================================================
 398    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 399    // in the current workdir, but in AliEn they will be in the file catalog,
 400    // mapped from AliRoot and pecified in the jdl input list.
 401
 402    // For now connection to top input container and common AOD output container
 403    // is done in this macro, but in future these containers will be connected
 404    // from each task configuration macro.
 405
 406    //
 407    // Tender and supplies. Needs to be called for every event.
 408    //
 409
 410    if (useTender) {
 411       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 412       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 413       //      tender->SelectCollisionCandidates();
 414       tender->SetDebugLevel(2);
 415    }
 416
 417
 418    Float_t fTrackEtaWindow = 0.9;
 419    Float_t fJetEtaWindow   = 0.5;
 420    Float_t fVertexWindow =  10;
 421    /*
 422    if(kIsPbPb){// for pass1
 423      Float_t fTrackEtaWindow = 0.8;
 424      Float_t fJetEtaWindow   = 0.4;
 425    }
 426    */
 427
 428
 429    if(iPhysicsSelection && !iAODanalysis){
 430      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 431      Int_t iTriggerHIC = 0;
 432      Bool_t rejectBkg = true;
 433      if(kIsPbPb){
 434        iTriggerHIC = 2;
 435        rejectBkg = false; // for the moment...
 436      }
 437      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,true,rejectBkg);
 438
 439      //     mgr->RegisterExtraFile("event_stat.root");
 440      mgr->AddStatisticsTask();
 441    }
 442    else{
 443      iPhysicsSelectionFlag = AliVEvent::kMB;
 444    }
 445
 446    if(kIsPbPb&&!iAODanalysis){
 447
 448      // has to run before AOD filter
 449      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
 450      AliCentralitySelectionTask *taskC = AddTaskCentrality();
 451       if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 452
 453
 454      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskEventplane.C");
 455      AliEPSelectionTask *taskEP = AddTaskEventplane();
 456      if (!taskEP) ::Warning("AnalysisTrainPWG4Jets", "AliEventplan cannot run for this train conditions - EXCLUDED");
 457    }
 458
 459    if (iESDfilter && !iAODanalysis) {
 460       //  ESD filter task configuration.
 461       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 462       // switch on centrality make for PbPb
 463       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilterPWG4Train(kUseKinefilter); // carefull, if physics selection is enabled you may get not primary vertex pointer later on...
 464       taskesdfilter->SetEnableFillAOD(!kFilterAOD);
 465       taskesdfilter->DisableV0s();
 466       taskesdfilter->DisableCascades();
 467       taskesdfilter->DisableKinks();
 468       taskesdfilter->DisablePmdClusters();
 469       taskesdfilter->DisableCaloClusters();
 470       taskesdfilter->DisableCells();
 471
 472       if(kIsMC){
 473         mgr->RegisterExtraFile("pyxsec_hists.root");
 474         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 475         kGridMergeExclude += "pyxsec_hists.root";
 476
 477       }
 478    }
 479
 480    // AOD tags
 481    if (kUseAODTags) {
 482       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 483       mgr->AddTask(tagTask);
 484       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 485                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 486       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 487       mgr->ConnectOutput(tagTask, 1, coutTags);
 488    }
 489
 490    if (iPWG4FastEmbedding) {
 491      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFastEmbedding.C");
 492      AliAnalysisTaskFastEmbedding *taskEmbedding = 0;
 493      if(kFastEmbAODList.Length()) taskEmbedding = AddTaskFastEmbedding(kFastEmbAODList, 1);
 494      else                         taskEmbedding = AddTaskFastEmbedding(kFastEmbeddingAOD, 0);
 495      taskEmbedding->SetJetBranch("jetsAOD_UA104_B0_Filter00256_Cut01000");
 496      // taskEmbedding->SetEvtSelecMode(AliAnalysisTaskFastEmbedding::kEventsAll);
 497      // taskEmbedding->SetDebugLevel(10);
 498    }
 499
 500     // Jet analysis
 501    if (iJETAN) {
 502       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 503       AliAnalysisTaskJets *taskjets = 0;
 504       if(iJETAN&1){
 505         /*
 506         taskjets = AddTaskJets(kHighPtFilterMask);
 507         taskjets->SetName("StandardJets");
 508         taskjets->SetNonStdBranch("");
 509         */
 510       }
 511       if(iJETAN&2){
 512         // Set only few jet finders  backgroudn subtraction w an wo
 513
 514         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 515         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 516         TString cTmp("");
 517         cTmp = taskjets->GetNonStdBranch();
 518         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 519
 520         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,0); // no background subtraction
 521         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 522         TString cTmp("");
 523         cTmp = taskjets->GetNonStdBranch();
 524         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 525
 526
 527         // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 528         if(kIsPbPb){
 529           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 530           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 531           cTmp = taskjets->GetNonStdBranch();
 532           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 533           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,2); // background subtraction
 534           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 535           cTmp = taskjets->GetNonStdBranch();
 536           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 537         }
 538
 539
 540
 541         // SICONE
 542         /*
 543         taskjets = AddTaskJets("AOD","SISCONE",0.4,kHighPtFilterMask,0.15,0); //no background subtraction to be done later....
 544         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 545         cTmp = taskjets->GetNonStdBranch();
 546         if(cTmp.Length()>0)kJetSubtractBranches += Form("%s ",cTmp.Data());
 547         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 548         */
 549         if(kUseAODMC){
 550           // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 551           if(kIsPbPb){
 552             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 553             cTmp = taskjets->GetNonStdBranch();
 554             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 555             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 556             cTmp = taskjets->GetNonStdBranch();
 557             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 558           }
 559           else{
 560             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 561             cTmp = taskjets->GetNonStdBranch();
 562             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 563             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 564             cTmp = taskjets->GetNonStdBranch();
 565             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 566           }
 567         }
 568         if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 569       }
 570       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 571    }
 572
 573
 574    if (iPWG4FastEmbedding && iJETAN) {
 575      AliAnalysisTaskJets *taskEmbJets = AddTaskJets("AODextra", "FASTJET", 0.4, kHighPtFilterMask);
 576      taskEmbJets->ReadAODFromOutput();
 577      kJetSubtractBranches_extra += Form("%s ", taskEmbJets->GetNonStdBranch());
 578
 579      taskEmbJets = AddTaskJets("AODextraonly", "FASTJET", 0.4, kHighPtFilterMask);
 580      taskEmbJets->ReadAODFromOutput();
 581
 582      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,0);
 583      taskEmbJets->ReadAODFromOutput();
 584      taskEmbJets = AddTaskJets("AODextraonly", "UA1", 0.4, kHighPtFilterMask,1.,0);
 585      taskEmbJets->ReadAODFromOutput();
 586      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,2);
 587      taskEmbJets->ReadAODFromOutput();
 588    }
 589
 590    if(iPWG4Cluster){
 591      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 592      AliAnalysisTaskJetCluster *taskCl = 0;
 593      Float_t fCenUp = 0;
 594      Float_t fCenLo = 0;
 595      if(kIsPbPb&&!kIsMC){
 596        fCenLo = 0;
 597        fCenUp = 80;
 598      }
 599      if(iPWG4Cluster&1){
 600
 601        if(kIsPbPb){
 602          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 603          taskCl->SetBackgroundCalc(kTRUE);
 604          taskCl->SetNRandomCones(1);
 605          //      taskCl->SetDebugLevel(11);
 606          taskCl->SetCentralityCut(fCenLo,fCenUp);
 607
 608          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 609          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 610          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 611          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 612          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 613
 614          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 615          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 616
 617          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 618          taskCl->SetNRandomCones(1);
 619          taskCl->SetBackgroundCalc(kTRUE);
 620          taskCl->SetCentralityCut(fCenLo,fCenUp);
 621          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 622
 623          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 624          kDefaultJetBackgroundBranchCut1 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 625          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 626          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 627          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 628          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 629          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 630
 631          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),2.0,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 632          taskCl->SetNRandomCones(1);
 633          taskCl->SetBackgroundCalc(kTRUE);
 634          taskCl->SetCentralityCut(fCenLo,fCenUp);
 635          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 636
 637          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 638          kDefaultJetBackgroundBranchCut2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 639          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 640          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 641          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 642          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 643          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 644
 645
 646          if (iPWG4FastEmbedding) {
 647            AliAnalysisTaskJetCluster *taskClEmb = 0;
 648            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 649            taskClEmb->SetBackgroundCalc(kTRUE);
 650            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 651            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 652            kDefaultJetBackgroundBranch_extra = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskClEmb->GetJetOutputBranch());
 653
 654            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 655            taskClEmb->SetBackgroundCalc(kFALSE);
 656            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 657            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 658
 659            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 660            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 661            taskClEmb->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 662            kJetSubtractBranches_extra += Form("%s ",taskClEmb->GetJetOutputBranch());
 663            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 664
 665            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 666            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 667            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 668          }
 669
 670          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets
 671          taskCl->SetNRandomCones(1);
 672          taskCl->SetBackgroundCalc(kTRUE);
 673          taskCl->SetCentralityCut(fCenLo,fCenUp);
 674          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 675          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 676          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 677          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 678
 679
 680
 681          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 682        }
 683        else{
 684          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background jets
 685          taskCl->SetBackgroundCalc(kTRUE);
 686          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 687          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 688          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 689
 690          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 691          taskCl->SetBackgroundCalc(kTRUE);
 692          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 693          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 694        }
 695
 696        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // thid id sldo got the random cones but avoiding the two leading jets
 697        taskCl->SetCentralityCut(fCenLo,fCenUp);
 698        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 699        taskCl->SetNRandomCones(1);
 700        if(iFilterAnalysis==2){
 701          taskCl->SetJetTriggerPtCut(kJetTriggerPtCut);
 702        }
 703        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 704
 705        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 706        kDefaultJetBranch = taskCl->GetJetOutputBranch();
 707        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 708        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip02");
 709        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 710        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 711        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 712        //       kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 713
 714        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,fVertexWindow);
 715        taskCl->SetNRandomCones(1);
 716        taskCl->SetCentralityCut(fCenLo,fCenUp);
 717        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 718        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 719
 720        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 721        kJetSubtractBranchesCut1 += Form("%s ",taskCl->GetJetOutputBranch());
 722        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 723        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 724
 725
 726        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),2.0,fTrackEtaWindow,fVertexWindow);
 727        taskCl->SetCentralityCut(fCenLo,fCenUp);
 728        taskCl->SetNRandomCones(1);
 729        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 730        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 731        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 732        kJetSubtractBranchesCut2 += Form("%s ",taskCl->GetJetOutputBranch());
 733        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 734        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 735
 736        // tmp track qa...
 737        /*
 738        taskCl = AddTaskJetCluster("AOD","",1<<8,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),2.0);
 739        taskCl->SetCentralityCut(fCenLo,fCenUp);
 740        taskCl->SetFilterMask(1<<4|1<<8,1);
 741        */
 742        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,2);
 743        taskCl->SetCentralityCut(fCenLo,fCenUp);
 744        taskCl->SetNRandomCones(1);
 745        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 746        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 747
 748        taskCl->SetJetTypes(1<<0|1<<2);
 749        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 750        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 751        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 752        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 753        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 754
 755
 756        if(kUseAODMC){
 757          if(kIsPbPb){
 758            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 759            taskCl->SetBackgroundCalc(kTRUE);
 760            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 761            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 762          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 763
 764          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fVertexWindow,fVertexWindow); // this one is for the background and random jets
 765            taskCl->SetBackgroundCalc(kTRUE);
 766            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 767            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 768            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 769          }
 770          else{
 771            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 772            taskCl->SetBackgroundCalc(kTRUE);
 773            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 774          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 775
 776          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 777            taskCl->SetBackgroundCalc(kTRUE);
 778            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 779            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 780            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 781            // pp background calcs...
 782          }
 783
 784          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 785          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC.Data());
 786          kDefaultJetBranchMC = taskCl->GetJetOutputBranch();
 787          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 788          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 789
 790          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 791          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC2.Data());
 792          kDefaultJetBranchMC2 = taskCl->GetJetOutputBranch();
 793          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 794          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 795        }
 796
 797
 798        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 799      }
 800    }
 801
 802
 803    if(iJETSUBTRACT&&kJetSubtractBranches.Length()){
 804      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetBackgroundSubtract.C");
 805      AliAnalysisTaskJetBackgroundSubtract *taskSubtract = 0;
 806      if(kJetSubtractBranches.Length()){
 807
 808
 809
 810
 811        for(int iB = 1;iB<3;iB++){
 812          if(iB>2)continue;
 813          taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 814          taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());         taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 815          if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 816          taskSubtract->SetKeepJets(kTRUE);
 817          TString cTmp;
 818          TObjArray *objArr = kJetSubtractBranches.Tokenize(" ");
 819          for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 820            TObjString *ostr = (TObjString*)objArr->At(iJB);
 821            cTmp = ostr->GetString().Data();
 822            cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 823            kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 824          }
 825
 826          //     taskSubtract->SetDebugLevel(3);
 827          if(iB==2){
 828            if(kJetSubtractBranches.Contains(kDefaultJetBranch.Data())&&kIsPbPb){
 829              kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 830            }
 831          }
 832
 833        }
 834
 835        //
 836        // cut1
 837        Int_t iB = 2;
 838        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut1,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut1000");
 839        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 840        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 841        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 842
 843        objArr = kJetSubtractBranchesCut1.Tokenize(" ");
 844        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 845          TObjString *ostr = (TObjString*)objArr->At(iJB);
 846          cTmp = ostr->GetString().Data();
 847          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 848          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 849        }
 850
 851        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut2,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut2000");
 852        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 853        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 854        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 855
 856        objArr = kJetSubtractBranchesCut2.Tokenize(" ");
 857        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 858          TObjString *ostr = (TObjString*)objArr->At(iJB);
 859          cTmp = ostr->GetString().Data();
 860          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 861          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 862        }
 863
 864      }
 865      if(kJetSubtractBranches_extra.Length()){
 866        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches_extra,2,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"extra");
 867        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 868        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 869        //taskSubtract->SetDebugLevel(3);
 870        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 871        if(kJetSubtractBranches_extra.Contains(kDefaultJetBranch.Data())){
 872          kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 873        }
 874      }
 875      if (!taskSubtract) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetBackgroundSubtrac cannot run for this train conditions - EXCLUDED");
 876    }
 877
 878    if (iDIJETAN) {
 879       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 880       AliAnalysisTaskDiJets *taskdijets = 0;
 881       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 882       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 883       if(iDIJETAN&2){
 884         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 885         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 886         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 887         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 888         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 889         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 890       }
 891    }
 892
 893    if(iPWGPPQASym){
 894      gROOT->LoadMacro("$ALICE_ROOT/PWGPP/PilotTrain/AddTaskQAsym.C");
 895      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 896      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 897    }
 898
 899
 900
 901    if(iPWG4TmpSourceSara){
 902      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 903      AliAnalysisTaskEta *taskEta = AddTaskEta();
 904      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 905    }
 906
 907
 908    if(iPWG4JetServices){
 909      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 910      AliAnalysisTaskJetServices *taskjetServ = 0;
 911      taskjetServ = AddTaskJetServices("/Users/kleinb/Dropbox/SharedJets/Christian/Files/PWG4_JetTasksOutput_110818a.root");
 912      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 913      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 914      else taskjetServ->SetRunRange(110000,160000);
 915      taskjetServ->SetMCData(kIsMC);
 916      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 917      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 918      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 919      taskjetServ->SetTrackEtaWindow(fTrackEtaWindow);
 920      taskjetServ->SetZVertexCut(fVertexWindow);
 921      taskjetServ->SetFilterMask(kHighPtFilterMask);
 922
 923      if(kIsPbPb)taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPbPb);
 924      else taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPP);
 925      if(kIsPbPb){
 926        if(kDeltaAODJetName.Length()>0&&kFilterAOD)taskjetServ->SetFilterAODCollisions(kTRUE);
 927        //       else if(iAODanalysis)taskjetServ->SetFilterAODCollisions(kTRUE);
 928        //       taskjetServ->SetDebugLevel(3);
 929      }
 930      if(iAODanalysis){
 931        //
 932        taskjetServ->SetAODInput(kTRUE);
 933      }
 934    }
 935
 936    if(iPWG4JetSpectrum){
 937      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 938      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 939      TString bkgClusters = kDefaultJetBackgroundBranch.Data();
 940      bkgClusters.ReplaceAll(Form("%s_",AliAODJetEventBackground::StdBranchName()),"");
 941      Printf("############# Possible jet branches ###################");
 942      for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 943        TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 944        Printf("%3d: %s",iJF+1,objStr->GetString().Data());
 945      }
 946
 947      //     Printf("Type q to exit");if(getchar()=='q')return;
 948      if(iPWG4JetSpectrum&1){
 949        if(kIsPbPb){
 950          for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 951            Long64_t value = kJetMapSpectrum(iJF+1);
 952            Printf("iJF: %d value: %d", iJF+1,(Int_t)value);
 953            if(value==0)continue;
 954            TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 955            TString bName1 = objStr->GetString().Data();
 956            TString bName2[3];
 957
 958            TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(iJF);
 959            TString bBkgName1("");
 960            TString bBkgName2[3];
 961
 962            Long64_t valueBkg1 = kJetBackMapSpectrum(iJF+1);
 963            if(valueBkg1>0){
 964              TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(valueBkg1-1);
 965              bBkgName1 = objStrBkg->GetString().Data();
 966            }
 967            Int_t iPartner = 0;
 968            if(value>0){
 969              Int_t iJF2 = -1;
 970              for(int i = 0;i<3;i++){
 971                iJF2 = value/kJetMapOffset[i]-1;
 972                value = value%kJetMapOffset[i];
 973                Printf("%d %d", iJF2+1,(Int_t)value);
 974                if(iJF2>=0&&iJF2<kJetListSpectrum.GetSize()){
 975                  TObjString *objStr2 = (TObjString*)kJetListSpectrum.At(iJF2);
 976                  bName2[iPartner] = objStr2->GetString().Data();
 977                  Long64_t valueBkg2 = kJetBackMapSpectrum(iJF2+1);
 978                  if(valueBkg2>0){
 979                    TObjString *objStrBkg2 = (TObjString*)kJetListSpectrum.At(valueBkg2-1);
 980                    bBkgName2[iPartner] = objStrBkg2->GetString().Data();
 981                  }
 982                  iPartner++;
 983                }
 984              }
 985            }
 986
 987
 988            // loop over all centralities
 989            for(int ic = 0;ic<5;ic++){
 990              if(ic!=0)continue;
 991              Bool_t bDone = kFALSE;
 992              for(int i = 0;i<TMath::Max(iPartner,1);i++){
 993                if(bName2[i].Length()){
 994                  taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
 995                  bDone = kTRUE;
 996                }
 997                else{
 998                  if(!bDone){
 999                    taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
1000                    bDone = kTRUE;
1001                  }
1002                  else{
1003                    continue;
1004                  }
1005                }
1006                Printf("%s/%s %s/%s",bName1.Data(),bBkgName1.Data(),bName2[i].Data(),bBkgName2[i].Data());
1007
1008                // setting all the other things...
1009                taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1010                taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1011
1012                // negative values do not fill the track histos
1013                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,-1);
1014                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,-1);
1015                if(!bName1.Contains("ANTIKT")||bName1.Contains("Cone")){
1016                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,-1);
1017                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRec,-1);
1018                }
1019
1020
1021                if(bName2[i].Length()==0){
1022                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
1023                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,0);
1024                }
1025                if(iAODanalysis==1){
1026                  taskjetSpectrum->SetAODJetInput(kTRUE);
1027                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1028                }
1029                else if (iAODanalysis==2){
1030                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1031                  taskjetSpectrum->SetAODJetInput(kFALSE);
1032                }
1033                //              taskjetSpectrum->SetDebugLevel(11);
1034                taskjetSpectrum->SetBranchBkgRec(bBkgName1.Data());
1035                taskjetSpectrum->SetBranchBkgGen(bBkgName2[i].Data());
1036              }
1037            }
1038          }
1039        }
1040        else{ // ! PbPb
1041          Int_t i = 0;
1042
1043          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1044                                                "",kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1045
1046
1047
1048          if(kDefaultJetBranchMC.Length()){
1049            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1050                                                kDefaultJetBranchMC.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1051            //      taskjetSpectrum->SetMinJetPt(10);
1052            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1053            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1054            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1055            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1056            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1057          }
1058          if(kDefaultJetBranchMC2.Length()){
1059            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1060                                                  kDefaultJetBranchMC2.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1061            //      taskjetSpectrum->SetMinJetPt(10);
1062            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1063            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1064            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1065            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1066            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1067          }
1068
1069          /*
1070          TString tmp2(kDefaultJetBranch.Data());
1071          tmp2.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),2));
1072          taskjetSpectrum = AddTaskJetSpectrum2(tmp2.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1073          //      taskjetSpectrum->SetDebugLevel(3);
1074          //        taskjetSpectrum->SetMinJetPt(10);
1075          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1076          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1077          taskjetSpectrum->SetTrackEtaWindow(0.8);
1078          taskjetSpectrum->SetJetEtaWindow(0.4);
1079
1080          // check the old subtracted vs. the new subtracted
1081          TString tmp3(kDefaultJetBranch.Data());
1082          tmp3.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),3));
1083          taskjetSpectrum = AddTaskJetSpectrum2(tmp3.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1084          //      taskjetSpectrum->SetDebugLevel(3);
1085          //        taskjetSpectrum->SetMinJetPt(10);
1086          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1087          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1088          taskjetSpectrum->SetTrackEtaWindow(0.8);
1089          taskjetSpectrum->SetJetEtaWindow(0.4);
1090          if(iAODanalysis)SetAODInput(taskjetSpectrum);
1091          */
1092        }
1093        if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
1094      }
1095    }
1096    AliAnalysisManager::SetCommonFileName("PWG4_Fragmentation.root");
1097    if(iPWG4Fragmentation){
1098      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
1099        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
1100        if(kUseAODMC){
1101
1102        }
1103        else{
1104
1105
1106          for(int ic = 1;ic < 5;ic++){
1107            // Anti-kT
1108            taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, ic);
1109            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1110            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1111
1112            // UA1
1113            taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, ic);
1114            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1115            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1116
1117          // SISCONE
1118            if(ic==1){
1119              /*
1120                taskFrag = AddTaskFragmentationFunction(1<<28,kHighPtFilterMask, ic);
1121                taskFrag = AddTaskFragmentationFunction(1<<29,kHighPtFilterMask, ic);
1122                taskFrag = AddTaskFragmentationFunction(1<<30,kHighPtFilterMask, ic);
1123              */
1124
1125
1126
1127              // Anti-kT B2 - B3
1128              if(!iAODanalysis==1){
1129                taskFrag = AddTaskFragmentationFunction(1<<26,kHighPtFilterMask, ic);
1130                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1131                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1132
1133                taskFrag = AddTaskFragmentationFunction(1<<27,kHighPtFilterMask, ic);
1134                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1135                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1136              }
1137            }
1138
1139          }
1140
1141
1142        }
1143        if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
1144    }
1145
1146    if(iPWG4JetChem){
1147      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
1148      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
1149      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
1150    }
1151
1152    if (iPWG4JetResponse) {
1153      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetResponse.C");
1154      AliAnalysisTask *taskJetResponse = 0;
1155
1156      if(iJETAN){
1157         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 0);
1158         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 1);
1159
1160         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 0);
1161         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 2);
1162      }
1163      if(iPWG4Cluster){
1164         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 0);
1165         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 1);
1166      }
1167      if (!taskJetResponse) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetResponse cannot run for this train conditions - EXCLUDED");
1168
1169    }
1170
1171    if(iPWG4JCORRAN){
1172      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
1173      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
1174      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
1175      else{
1176        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
1177      }
1178    }
1179
1180    if(iPWG4UE){
1181      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
1182      AliAnalysisTaskUE *taskUE = 0;
1183      if(iPWG4UE&1)taskUE = AddTaskUE();
1184      if(iPWG4UE&2){
1185        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1186        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
1187        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
1188        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1189        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
1190        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
1191        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1192        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
1193        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
1194      }
1195
1196      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
1197    }
1198
1199    if(iPWG4LeadingUE){
1200      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
1201      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
1202      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
1203      //     taskLeadingUE->SetFilterBit(64);
1204    }
1205
1206
1207    if(iPWG4CorrectionsUE){
1208      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
1209      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
1210      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
1211      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
1212    }
1213
1214    if(iPWG4ThreeJets){
1215      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
1216      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
1217      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
1218    }
1219    if(iPWG4QGSep){
1220      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
1221      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
1222      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
1223    }
1224
1225
1226    if(iPWG4Minijet){
1227      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
1228      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
1229      // if we ha highmult trigger add another task
1230      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
1231    }
1232
1233    AliAnalysisManager::SetCommonFileName("PWG4_HighPtQA.root");
1234    if(iPWG4PtQAMC){
1235      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
1236      AliPWG4HighPtQAMC *taskQAMC = 0;
1237      if(kUseMC){
1238        if(iPWG4PtQAMC&1){
1239          taskQAMC = AddTaskPWG4HighPtQAMCAll(kGridDataSet.Data());
1240        }
1241      }
1242      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
1243    }
1244
1245    if(iPWG4PtTrackQA){
1246      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtTrackQA.C");
1247      if(iPWG4PtTrackQA&2)AddTaskPWG4HighPtTrackQAAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1248      else AddTaskPWG4HighPtTrackQAAllReduced(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1249    }
1250
1251    if(iPWG4PtQATPC){
1252      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
1253      AliPWG4HighPtQATPConly *taskQATPC = 0;
1254      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
1255      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
1256
1257  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
1258    }
1259
1260    if(iPWG4Cosmics){
1261      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
1262
1263      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
1264      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
1265
1266      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
1267    }
1268
1269
1270    if(iPWG4PtSpectra){
1271      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
1272      AddTaskPWG4HighPtSpectraAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1273    }
1274
1275    if(iPWG4KMeans){
1276      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
1277      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
1278      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
1279    }
1280
1281    if(iPWG4PartCorr){
1282      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
1283      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
1284      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
1285      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
1286      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
1287      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
1288    }
1289
1290    if(iPWG4CaloQA){
1291      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
1292      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
1293      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
1294      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
1295    }
1296
1297    if(iPWG4JetCorr){
1298      //     using namespace JetCorrelHD;
1299      TString cdir = gSystem->WorkingDirectory();
1300      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1301      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
1302      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
1303      gSystem->ChangeDirectory(cdir);
1304      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
1305    }
1306
1307    if(iPWG4Tagged){
1308      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
1309      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
1310      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
1311      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
1312    }
1313    if (iPWG4omega3pi) {
1314      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
1315      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
1316      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
1317  for these train conditions - EXCLUDED");
1318    }
1319
1320    // PWG4 gamma conversion analysis
1321    if (iPWG4GammaConv) {
1322       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
1323       TString cdir = gSystem->WorkingDirectory();
1324       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1325       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
1326       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1327       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1328       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
1329       //      TString kGCAnalysisCutSelectionId="9003562000100310";
1330       //      TString kGCAnalysisCutSelectionId="9003562000100312";
1331       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
1332       if(!kIsMC)gcArguments += " -mc-off";
1333       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
1334       gSystem->ChangeDirectory(cdir);
1335       taskGammaConversion->SelectCollisionCandidates();
1336       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
1337    }
1338
1339    if (iPWG4CaloConv) {
1340       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
1341       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
1342       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
1343    }
1344
1345
1346
1347    //==========================================================================
1348    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
1349    // Run the analysis
1350    //
1351    if (kPluginUse) {
1352       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1353       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1354    }
1355
1356    if (mgr->InitAnalysis()) {
1357      mgr->PrintStatus();
1358      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
1359      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
1360        TString alien_workdir = gGrid->GetHomeDirectory();
1361        if (iAODanalysis) alien_workdir += "analysisAOD";
1362        else              alien_workdir += "analysisESD";
1363        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1364        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1365        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
1366               alien_workdir.Data(),gridhandler->GetGridOutputDir());
1367
1368        TString dest;
1369        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1370        if(AliAnalysisAlien::FileExists(dest.Data())){
1371          Printf("%s exist on grid removing...",dest.Data());
1372          gGrid->Rm(dest.Data());
1373        }
1374        Printf("%s copy ...",dest.Data());
1375        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1376
1377
1378        TString dest;
1379        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1380        if(AliAnalysisAlien::FileExists(dest.Data())){
1381          Printf("%s exist on grid removing...",dest.Data());
1382          gGrid->Rm(dest.Data());
1383        }
1384        Printf("%s copy ...",dest.Data());
1385        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1386
1387        dest = Form("%s/%s/%s_merge_final.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1388        if(AliAnalysisAlien::FileExists(dest.Data())){
1389          Printf("%s exist on grid removing...",dest.Data());
1390          gGrid->Rm(dest.Data());
1391        }
1392        Printf("%s copy ...",dest.Data());
1393        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1394      }
1395      AliLog::SetGlobalLogLevel(AliLog::kError);
1396      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1397        TFile * fM = TFile::Open("manager_local.root","RECREATE");
1398        mgr->Write();
1399        fM->Close();
1400      }
1401
1402      // grmpf, aliroot error handler overwrites root
1403      gErrorIgnoreLevel = kErrorIgnoreLevel;
1404      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
1405      StartAnalysis(smode, chain);
1406      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1407        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
1408          mgr->ProfileTask(i);
1409        }
1410      }
1411      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
1412        // Offline mode path files
1413        //       PatchJDL();
1414        //       PatchAnalysisMacro();
1415      }
1416
1417      if (kSaveTrain && smode=="GRID") {
1418        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1419        TString alien_workdir = gGrid->GetHomeDirectory();
1420        if (iAODanalysis) alien_workdir += "analysisAOD";
1421        else              alien_workdir += "analysisESD";
1422        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1423        //     kGridOutdir = gridhandler->GetGridOutputDir();
1424        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
1425                 alien_workdir.Data());
1426        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
1427          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1428        if (strcmp(plugin_mode, "test"))
1429          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1430      }
1431    }
1432 }
1433
1434 //______________________________________________________________________________
1435 void StartAnalysis(const char *mode, TChain *chain) {
1436 // Start analysis.
1437    Int_t imode = -1;
1438    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1439    if (!strcmp(mode, "LOCAL")) imode = 0;
1440    if (!strcmp(mode, "PROOF")) imode = 1;
1441    if (!strcmp(mode, "GRID"))  imode = 2;
1442    switch (imode) {
1443       case 0:
1444          if (!chain) {
1445             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1446             return;
1447          }
1448          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1449          return;
1450       case 1:
1451          if (!kProofDataSet.Length()) {
1452             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
1453             return;
1454          }
1455          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
1456          return;
1457       case 2:
1458          if (kPluginUse) {
1459             if (!mgr->GetGridHandler()) {
1460                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
1461                return;
1462             }
1463             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
1464          } else {
1465             if (!chain) {
1466                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1467                return;
1468             }
1469             //            mgr->StartAnalysis(mode, chain);
1470             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1471          }
1472          return;
1473    }
1474 }
1475
1476 //______________________________________________________________________________
1477 void CheckModuleFlags(const char *mode) {
1478 // Checks selected modules and insure compatibility
1479    Int_t imode = -1;
1480    if (!strcmp(mode, "LOCAL")) imode = 0;
1481    if (!strcmp(mode, "PROOF")) imode = 1;
1482    if (!strcmp(mode, "GRID"))  imode = 2;
1483
1484
1485    if (kUseCPAR) {
1486      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
1487    }
1488
1489    if (imode==1) {
1490       if (!kUsePAR) {
1491          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
1492          kUsePAR = kTRUE;
1493       }
1494    }
1495    if (imode != 2) {
1496       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
1497       kPluginUse = kFALSE;
1498    }
1499
1500
1501    if(!kIsMC){
1502      // switch off anthin related to MC
1503      kUseMC = 0;
1504      kUseAODMC = 0;
1505      kUseTR = kFALSE;
1506    }
1507
1508    // Decide if we have PbPb
1509    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
1510      Printf("Using settings for Pb+Pb");
1511      kIsPbPb = true;
1512    }
1513
1514
1515
1516    if (iAODanalysis) {
1517    // AOD analysis
1518       if (kUseMC)
1519          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
1520       if (kUseAODTags)
1521          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
1522       kUseMC = kFALSE;
1523       kUseTR = kFALSE;
1524       kUseAODTags = kFALSE;
1525       if (iESDfilter)
1526          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
1527       iESDfilter   = 0;
1528       if (iPhysicsSelection)
1529          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
1530       iPhysicsSelection   = 0;
1531       if (!iAODhandler) {
1532          if (iJETAN)
1533             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
1534          iJETAN = 0;
1535          iDIJETAN = 0;
1536       }
1537       // Disable tasks that do not work yet on AOD data
1538       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
1539       iPWG4JCORRAN = 0;
1540       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1541       iPWG4PtQAMC        = 0;
1542       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
1543       iPWG4PtQATPC        = 0;
1544       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
1545       iPWG4Cosmics        = 0;
1546
1547       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1548       iPWG4KMeans       = 0;
1549       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1550       iPWG4JetCorr = 0;
1551       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1552       iPWG4PartCorr = 0;
1553       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1554       iPWG4CaloQA = 0;
1555       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1556       iPWG4Tagged = 0;
1557       if (iPWG4omega3pi)
1558         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1559       iPWG4omega3pi = 0;
1560       if(iPWGPPQASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWGPP QA Sym disabled in analysis on AOD's");
1561       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1562       iPWG4GammaConv = 0;
1563       iPWGPPQASym     = 0;
1564       iCentralitySelection = 0;
1565    } else {
1566    // ESD analysis
1567
1568      if(kIsPbPb){
1569        iCentralitySelection = 1;
1570      }
1571
1572      if (!kUseMC){
1573        kUseTR = kFALSE;
1574
1575        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1576        kUseKinefilter = kFALSE;
1577        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1578        iPWG4PtQAMC        = 0;
1579        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1580        iPWG4CorrectionsUE = 0;
1581      }
1582      if (iJETAN){
1583        iESDfilter=1;
1584      }
1585       if (!iESDfilter){
1586         kUseKinefilter = kFALSE;
1587         kUseMuonfilter = kFALSE;
1588       }
1589       if(!iJETAN){
1590         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
1591       }
1592    }
1593    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtTrackQA||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
1594    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
1595    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1596
1597
1598    iEMCUtilLibs = iPWG4JetTasks||iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib||iJETAN;
1599    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1600
1601    if (iESDfilter) {iAODhandler=1;}
1602    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1603    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1604
1605
1606
1607 }
1608
1609 //______________________________________________________________________________
1610 Bool_t Connect(const char *mode) {
1611 // Connect <username> to the back-end system.
1612    Int_t imode = -1;
1613    if (!strcmp(mode, "LOCAL")) imode = 0;
1614    if (!strcmp(mode, "PROOF")) imode = 1;
1615    if (!strcmp(mode, "GRID"))  imode = 2;
1616    TString username = gSystem->Getenv("alien_API_USER");
1617    switch (imode) {
1618       case 0:
1619          break;
1620       case 1:
1621          if  (!username.Length()) {
1622             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1623                            1. Have called: alien-token-init <username>\n \
1624                            2. Have called: >source /tmp/gclient_env_$UID");
1625             return kFALSE;
1626          }
1627          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1628                 username.Data(), kProofCluster.Data());
1629          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1630 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1631          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1632          if (!gProof) {
1633             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1634                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1635             return kFALSE;
1636          }
1637          if(kProofClearPackages)gProof->ClearPackages();
1638
1639          if(kProofSaveToAlien){
1640            TGrid::Connect("alien://");
1641            if (gGrid) {
1642              TString homedir = gGrid->GetHomeDirectory();
1643              TString workdir = homedir + kTrainName;
1644              if (!gGrid->Cd(workdir)) {
1645                gGrid->Cd(homedir);
1646                if (gGrid->Mkdir(workdir)) {
1647                  gGrid->Cd(kTrainName);
1648                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1649                }
1650              }
1651              gGrid->Mkdir("proof_output");
1652              gGrid->Cd("proof_output");
1653              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1654            }
1655          }
1656          break;
1657       case 2:
1658          if  (!username.Length()) {
1659             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1660                            1. Have called: alien-token-init <username>\n \
1661                            2. Have called: >source /tmp/gclient_env_$UID");
1662             return kFALSE;
1663          }
1664          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1665             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1666                            "When using the AliEn plugin it is preferable to define the \
1667                            variable alien_CLOSE_SE in your environment.");
1668             return kFALSE;
1669          }
1670          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1671                 username.Data());
1672          TGrid::Connect("alien://");
1673          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1674          break;
1675       default:
1676          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1677          return kFALSE;
1678    }
1679    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1680    return kTRUE;
1681 }
1682
1683 //______________________________________________________________________________
1684 Bool_t LoadCommonLibraries(const char *mode)
1685 {
1686    if (!gSystem->Getenv("ALICE_ROOT")) {
1687       ::Error("AnalysisTrainPWG4Jets.C", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1688       return kFALSE;
1689    }
1690
1691    // Load common analysis libraries.
1692    Int_t imode = -1;
1693    if (!strcmp(mode, "LOCAL")) imode = 0;
1694    if (!strcmp(mode, "PROOF")) imode = 1;
1695    if (!strcmp(mode, "GRID"))  imode = 2;
1696    Bool_t success = kTRUE;
1697    // ROOT libraries
1698    gSystem->Load("libTree.so");
1699    gSystem->Load("libGeom.so");
1700    gSystem->Load("libVMC.so");
1701    gSystem->Load("libPhysics.so");
1702    gSystem->Load("libMinuit.so");
1703
1704    // Load framework classes. Par option ignored here.
1705    switch (imode) {
1706       case 0:
1707       case 2:
1708          if (kUseCPAR) {
1709             success &= LoadLibrary("STEERBase", mode, kTRUE);
1710             success &= LoadLibrary("ESD", mode, kTRUE);
1711             success &= LoadLibrary("AOD", mode, kTRUE);
1712             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1713             success &= LoadLibrary("OADB", mode, kTRUE);
1714             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1715             success &= LoadLibrary("ROOTFILES", mode, kTRUE);
1716             //            success &= LoadLibrary("EventMixing", mode,kTRUE);
1717             success &= LoadLibrary("CORRFW", mode, kTRUE);
1718          } else {
1719             success &= LoadLibrary("libSTEERBase.so", mode);
1720             success &= LoadLibrary("libESD.so", mode);
1721             success &= LoadLibrary("libAOD.so", mode);
1722             success &= LoadLibrary("libANALYSIS.so", mode);
1723             success &= LoadLibrary("libOADB.so", mode, kTRUE);
1724             success &= LoadLibrary("libANALYSISalice.so", mode);
1725             //            success &= LoadLibrary("libEventMixing.so", mode);
1726             success &= LoadLibrary("libCORRFW.so", mode);
1727             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1728          }
1729          break;
1730       case 1:
1731          Int_t ires = -1;
1732          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1733          if (ires < 0) {
1734             success &= LoadLibrary("STEERBase", mode);
1735             success &= LoadLibrary("ESD", mode);
1736             success &= LoadLibrary("AOD", mode);
1737             success &= LoadLibrary("ANALYSIS", mode);
1738             success &= LoadLibrary("ANALYSISalice", mode);
1739             success &= LoadLibrary("EventMixing", mode);
1740             success &= LoadLibrary("CORRFW", mode);
1741          } else {
1742             ires = gProof->EnablePackage(kProofAFversion);
1743             if (ires<0) success = kFALSE;
1744             success &= LoadLibrary("CORRFW", mode);
1745          }
1746          break;
1747       default:
1748          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1749          return kFALSE;
1750    }
1751    if (success) {
1752       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1753       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1754               gSystem->GetIncludePath());
1755    } else {
1756       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1757    }
1758
1759    return success;
1760 }
1761
1762 //______________________________________________________________________________
1763 Bool_t LoadAnalysisLibraries(const char *mode)
1764 {
1765 // Load common analysis libraries.
1766   Bool_t success = kTRUE;
1767   if (useTender) {
1768       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1769           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1770    }
1771    if (iESDfilter) {
1772      /*
1773       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1774           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1775      */
1776    }
1777    // JETAN
1778    if (iJETANLib) {
1779      // this part needs some rework in case we do not need the fastjed finders for processing
1780      if(iEMCUtilLibs){
1781        if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1782            !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1783      }
1784      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1785      if (!strcmp(mode, "PROOF")){
1786        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1787        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1788        // problem when loading siscone copiled with different gcc version??
1789        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1790        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1791      }
1792      if(!kUsePAR){
1793        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1794        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1795        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1796        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1797      }
1798      else{
1799        // par files plus FASTJET needs some extra work... need to change
1800        // the loading sequence in the auto generated .C file
1801        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1802        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1803        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1804        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1805      }
1806      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1807    }
1808    if(iPWG4JetTasks){
1809      if (!LoadLibrary("PWG4Base", mode, kTRUE)) return kFALSE;
1810      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1811    }
1812
1813    if(iPWGPPQASym){
1814      if (!LoadSource(Form("%s/PWGPP/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1815    }
1816    if(iPWG4TmpSourceSara){
1817      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1818      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1819    }
1820
1821    if (iPWG4PartCorrLibs) {
1822       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1823           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1824    }
1825    if(iPWG4JCORRAN){
1826      // PWG4 particle correlations
1827      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1828    }
1829    if (iPWG4JetCorr) {
1830      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1831    }
1832    if (iPWG4omega3pi) {
1833      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1834    }
1835    if (iPWG4GammaConvLib) {
1836       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1837    }
1838
1839    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1840    return kTRUE;
1841 }
1842
1843 //______________________________________________________________________________
1844 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1845 {
1846 // Load a module library in a given mode. Reports success.
1847    Int_t imode = -1;
1848    Int_t result;
1849    TString smodule(module);
1850    if (!strcmp(mode, "LOCAL")) imode = 0;
1851    if (!strcmp(mode, "PROOF")) imode = 1;
1852    if (!strcmp(mode, "GRID"))  imode = 2;
1853    TString mod(module);
1854    if (!mod.Length()) {
1855       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1856       return kFALSE;
1857    }
1858    // If a library is specified, just load it
1859    if (smodule.EndsWith(".so")) {
1860       mod.Remove(mod.Index(".so"));
1861       result = gSystem->Load(mod);
1862       if (result < 0) {
1863          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1864          return kFALSE;
1865       }
1866       if (rec) anaLibs += Form("%s.so ",mod.Data());
1867       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1868       return kTRUE;
1869    }
1870    // Check if the library is already loaded
1871    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1872       return kTRUE;
1873    switch (imode) {
1874       case 0:
1875       case 2:
1876          if (kUsePAR) {
1877             result = SetupPar(module);
1878             if (rec) anaPars += Form("%s.par ", module);
1879          } else {
1880             result = gSystem->Load(Form("lib%s.so", module));
1881             if (rec) anaLibs += Form("lib%s.so ", module);
1882          }
1883          break;
1884       case 1:
1885         if(!gSystem->AccessPathName(module)){
1886           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1887           gSystem->Exec(Form("rm -rf %s",module));
1888         }
1889          result = gProof->UploadPackage(module);
1890          if (result<0) {
1891             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1892             if (result<0) {
1893                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1894                return kFALSE;
1895             }
1896          }
1897          result = gProof->EnablePackage(module);
1898          break;
1899       default:
1900          return kFALSE;
1901    }
1902    if (result < 0) {
1903       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1904       return kFALSE;
1905    }
1906    return kTRUE;
1907 }
1908
1909
1910
1911 //______________________________________________________________________________
1912 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1913 {
1914 // Load a module library in a given mode. Reports success.
1915    Int_t imode = -1;
1916    Int_t result = -1;
1917    if (!strcmp(mode, "LOCAL")) imode = 0;
1918    if (!strcmp(mode, "PROOF")) imode = 1;
1919    if (!strcmp(mode, "GRID"))  imode = 2;
1920    TString ssource(source);
1921    TString basename = gSystem->BaseName(ssource.Data());
1922    if (!ssource.Length()) {
1923       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1924       return kFALSE;
1925    }
1926    // we have a source code so compile it
1927    if (ssource.EndsWith(".cxx")) {
1928      // need to copy it here other wise the path is also used on grid...
1929      ssource.Remove(ssource.Index(".cxx"));
1930      basename.Remove(basename.Index(".cxx"));
1931      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1932      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1933      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1934      // Path to code
1935      // only needed for local compilation, in grid and proof mode
1936      // the task headers are uploaded
1937      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1938      // Printf("LoadSources:: Including path %s",path.Data());
1939      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1940      Printf("LoadSources:: Loading...  path %s",basename.Data());
1941      switch (imode) {
1942      case 0:
1943        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1944        break;
1945      case 1:
1946        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1947        break;
1948      case 2:
1949        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1950        if (rec){
1951          // what we want to compile
1952          anaSources += Form("%s.cxx ",basename.Data());
1953          // what we need as input...
1954          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1955        }
1956        break;
1957      default:
1958        return kFALSE;
1959      }
1960    }
1961    if (result < 0) {
1962       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1963       return kFALSE;
1964    }
1965    return kTRUE;
1966 }
1967
1968
1969 //______________________________________________________________________________
1970 TChain *CreateChain(const char *mode, const char *plugin_mode)
1971 {
1972 // Create the input chain
1973    Int_t imode = -1;
1974    if (!strcmp(mode, "LOCAL")) imode = 0;
1975    if (!strcmp(mode, "PROOF")) imode = 1;
1976    if (!strcmp(mode, "GRID"))  imode = 2;
1977    TChain *chain = NULL;
1978    // Local chain
1979    switch (imode) {
1980       case 0:
1981          if (iAODanalysis) {
1982             if (!kLocalXMLDataset.Length()) {
1983                // Local AOD
1984                chain = new TChain("aodTree");
1985                TString line;
1986                ifstream in;
1987                in.open(kLocalDataList.Data());
1988                Int_t ic = 0;
1989                while (in.good()) {
1990                  in >> line;
1991                  if (line.Length() == 0) continue;
1992                  Printf("%d adding %s",ic,line.Data());
1993                  chain->Add(line.Data());
1994                  ic++;
1995                }
1996             } else {
1997                // Interactive AOD
1998                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1999             }
2000          } else {
2001            if (!kLocalXMLDataset.Length()) {
2002              // Local ESD
2003              chain = new TChain("esdTree");
2004              TString line;
2005              ifstream in;
2006              in.open(kLocalDataList.Data());
2007              while (in.good()) {
2008                in >> line;
2009                if (line.Length() == 0) continue;
2010                cout << " line = " << line << endl;
2011                chain->Add(line.Data());
2012              }
2013            } else {
2014              // Interactive ESD
2015                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
2016            }
2017          }
2018          break;
2019       case 1:
2020          break;
2021       case 2:
2022          if (kPluginUse) {
2023 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
2024 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
2025          } else {
2026             TString           treeName = "esdTree";
2027             if (iAODanalysis) treeName = "aodTree";
2028             chain = CreateChainSingle("wn.xml", treeName);
2029          }
2030          break;
2031       default:
2032    }
2033    if (chain && chain->GetNtrees()) return chain;
2034    return NULL;
2035 }
2036
2037 //______________________________________________________________________________
2038 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
2039 {
2040    printf("*******************************\n");
2041    printf("*** Getting the ESD Chain   ***\n");
2042    printf("*******************************\n");
2043    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
2044
2045    if (!myCollection) {
2046       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
2047       return NULL ;
2048    }
2049
2050    TChain* chain = new TChain(treeName);
2051    myCollection->Reset() ;
2052    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
2053    chain->ls();
2054    return chain;
2055 }
2056
2057 //______________________________________________________________________________
2058 Int_t SetupPar(char* pararchivename)
2059 {
2060    if (!pararchivename || !strlen(pararchivename)) return -1;
2061    char processline[1024];
2062    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
2063       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
2064          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
2065         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
2066                   Form("%s.par",pararchivename));
2067       } else {
2068          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
2069          return -1;
2070       }
2071    }
2072    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
2073    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
2074
2075    TString ocwd = gSystem->WorkingDirectory();
2076    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
2077
2078    // check for BUILD.sh and execute
2079    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
2080       printf("*******************************\n");
2081       printf("*** Building PAR archive    ***\n");
2082       printf("*******************************\n");
2083       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
2084          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
2085          return -1;
2086       }
2087    }
2088
2089         // check for SETUP.C and execute
2090         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
2091             printf("*******************************\n");
2092             printf("*** Setup PAR archive       ***\n");
2093             printf("*******************************\n");
2094             gROOT->Macro("PROOF-INF/SETUP.C");
2095         }
2096         if (!gSystem->ChangeDirectory(ocwd.Data())){
2097           Error("Change back directory",Form("Cannot change to %s",ocwd.Data()));
2098           return -1;
2099         }
2100    return 0;
2101 }
2102
2103 //______________________________________________________________________________
2104 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
2105 {
2106 // Check if user has a valid token, otherwise make one. This has limitations.
2107 // One can always follow the standard procedure of calling alien-token-init then
2108 //   source /tmp/gclient_env_$UID in the current shell.
2109 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
2110    AliAnalysisAlien *plugin = new AliAnalysisAlien();
2111 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
2112    plugin->SetRunMode(plugin_mode);
2113    plugin->SetCheckCopy(kFALSE);
2114    if (kPluginUseProductionMode) plugin->SetProductionMode();
2115    plugin->SetJobTag(kJobTag);
2116    plugin->SetNtestFiles(1);
2117 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
2118 // Set versions of used packages
2119    plugin->SetAPIVersion("V1.1x");
2120    //   plugin->SetAPIVersion("V1.0x");
2121 //   plugin->SetAPIVersion("V2.4");
2122    plugin->SetROOTVersion(kPluginRootVersion);
2123    plugin->SetAliROOTVersion(kPluginAliRootVersion);
2124 // Declare input data to be processed.
2125 // Method 1: Create automatically XML collections using alien 'find' command.
2126 // Define production directory LFN
2127    plugin->SetGridDataDir(kGridDatadir.Data());
2128 // Set data search pattern
2129    if (iAODanalysis) plugin->SetDataPattern(Form(" %s/*/*AliAOD.root",kGridPassPattern.Data()));
2130    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
2131 // ...then add run numbers to be considered
2132 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
2133    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
2134      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
2135      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
2136    }
2137
2138    if(kGridLocalRunList.Length()>0){
2139      ifstream in1;
2140      in1.open(kGridLocalRunList.Data());
2141      int iRun = 0;
2142      int icount = 0;
2143      Int_t nRun = 0;
2144      // just use run numbers, negatives will be excluded
2145      while(in1>>iRun){
2146        if(iRun>=0){
2147          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
2148            Printf("AnalysisTrainPWG4Jets Adding run number from File %d: %s",nRun,Form(kGridRunPattern.Data(),iRun));
2149            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
2150
2151          }
2152          else{
2153            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2154          }
2155          nRun++;
2156        }
2157        else{
2158          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2159        }
2160      }
2161    }
2162 // Method 2: Declare existing data files (raw collections, xml collections, root file)
2163 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
2164 // XML collections added via this method can be combined with the first method if
2165 // the content is compatible (using or not tags)
2166 //   plugin->AddDataFile("tag.xml");
2167 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
2168 // Define alien work directory where all files will be copied. Relative to alien $HOME.
2169    TString alien_workdir = "";
2170
2171    if (iAODanalysis)  alien_workdir += "analysisAOD";
2172    else               alien_workdir += "analysisESD";
2173        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
2174    plugin->SetGridWorkingDir(alien_workdir.Data());
2175
2176    // Declare alien output directory. Relative to working directory.
2177    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2178    plugin->SetGridOutputDir(kGridOutdir);
2179
2180    // Add external packages
2181    plugin->AddExternalPackage("boost::v1_43_0");
2182    plugin->AddExternalPackage("cgal::v3.6");
2183    plugin->AddExternalPackage("fastjet::v2.4.2");
2184
2185
2186    // set extra libs before par file compilation
2187    anaLibs += kGridExtraFiles;
2188    anaLibs     = anaLibs.Strip();
2189    Printf("anaLibs %s",anaLibs.Data());
2190    Printf("anaLibsExtra %s",anaLibsExtra.Data());
2191
2192    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
2193    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
2194
2195    TString ana_sources = "";
2196    TString ana_add = "";
2197    if (kUsePAR && anaPars.Length()) {
2198       printf("%s\n", anaPars.Data());
2199       TObjArray *arr;
2200       TObjString *objstr;
2201       arr = anaPars.Tokenize(" ");
2202       TIter next(arr);
2203       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
2204       delete arr;
2205    }
2206
2207 // Declare the analysis source files names separated by blancs. To be compiled runtime
2208 // using ACLiC on the worker nodes.
2209    ana_sources = anaSources.Strip();
2210 // Declare all libraries (other than the default ones for the framework. These will be
2211 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
2212
2213    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
2214    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
2215    // Declare the output file names separated by blancs.
2216    // (can be like: file.root or file.root@ALICE::Niham::File)
2217    plugin->SetMergeExcludes(kGridMergeExclude);
2218    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
2219    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
2220    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
2221    // Use fastread option
2222    plugin->SetFastReadOption(kPluginFastReadOption);
2223    // UseOverwrite mode
2224    plugin->SetOverwriteMode(kPluginOverwriteMode);
2225    // Optionally define the files to be archived.
2226    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
2227    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
2228
2229    // Put default output files to archive
2230    TString listhists = "";
2231    TString listaods  = "";
2232    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2233    TIter next(mgr->GetOutputs());
2234    AliAnalysisDataContainer *output;
2235    while ((output=(AliAnalysisDataContainer*)next())) {
2236       const char *filename = output->GetFileName();
2237       if (!(strcmp(filename, "default"))) {
2238         if (!mgr->GetOutputEventHandler()) continue;
2239          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
2240          if (listaods.Length()) listaods += " ";
2241          listaods += filename;
2242       } else {
2243         if(!listhists.Contains(filename)){
2244           if (listhists.Length()) listhists += " ";
2245           listhists += filename;
2246         }
2247       }
2248    }
2249
2250    if (mgr->GetExtraFiles().Length()) {
2251      if (listaods.Length()) listaods += " ";
2252      listaods += mgr->GetExtraFiles();
2253    }
2254
2255    // if we do not fill the aod we do not need to store it
2256    //   kGridMergeExclude = listaods;
2257
2258    if(kSaveAOD>=0){
2259      TString outputFiles =  "";
2260      outputFiles += mgr->GetExtraFiles();
2261      if (listhists.Length()) outputFiles += " ";
2262      outputFiles += listhists;
2263      plugin->SetDefaultOutputs(kFALSE);
2264      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2265      // remove
2266      // no harm done when we try to remove something that is not there :)
2267      if(!(kSaveAOD&(1<<0))){
2268        outputFiles.ReplaceAll("AliAOD.root ","");
2269        listaods.ReplaceAll("AliAOD.root ","");
2270      }
2271      if(!(kSaveAOD&(1<<1))){
2272        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
2273        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
2274
2275      }
2276      if(!(kSaveAOD&(1<<2))){
2277        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2278        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2279      }
2280      if(!(kSaveAOD&(1<<3))){
2281        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2282        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2283      }
2284
2285      //
2286      plugin->SetDefaultOutputs(kFALSE);
2287      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2288      plugin->SetOutputFiles(outputFiles.Data());
2289    }
2290
2291    TString outputArchive;
2292    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
2293    listaods.ReplaceAll(" ", ",");
2294    listhists.ReplaceAll(" ", ",");
2295    if (listhists.Length()){
2296      outputArchive += " ";
2297      outputArchive += "root_archive.zip:";
2298      outputArchive += listhists;
2299      if (listaods.Length()){
2300        outputArchive += ",";
2301        outputArchive += listaods;
2302      }
2303      outputArchive += Form("@%s", kGridOutputStorages.Data());
2304    }
2305    else{
2306
2307      if (listaods.Length()){
2308        // we have only aod'ish output
2309        outputArchive += " ";
2310        outputArchive += "root_archive.zip:";
2311        outputArchive += listaods;
2312        outputArchive += Form("@%s", kGridOutputStorages.Data());
2313      }
2314      else{
2315        // no other outputs than std..
2316       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
2317      }
2318    }
2319
2320    plugin->SetDefaultOutputs(kFALSE);
2321    plugin->SetOutputArchive(outputArchive);
2322
2323
2324    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
2325    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
2326    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
2327    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
2328    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
2329    //   plugin->SetMaxInitFailed(5);
2330    // Optionally resubmit threshold.
2331    // plugin->SetMasterResubmitThreshold(90);
2332    // Optionally set time to live (default 30000 sec)
2333    plugin->SetTTL(80000); // 22h...
2334    // Optionally set input format (default xml-single)
2335    plugin->SetInputFormat("xml-single");
2336    // Optionally modify the name of the generated JDL (default analysis.jdl)
2337    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
2338    // Optionally modify the executable name (default analysis.sh)
2339    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
2340    // Optionally modify job price (default 1)
2341    plugin->SetPrice(1);
2342    // Optionally modify split mode (default 'se')
2343    plugin->SetSplitMode("se");
2344    return plugin;
2345 }
2346
2347 //______________________________________________________________________________
2348 void WriteConfig()
2349 {
2350 // Write train configuration in a file. The file name has the format:
2351 // train_[trainName]_ddMonthyyyy_time.C
2352    if (kUseDate) {
2353       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
2354       ifstream fdate("date.tmp");
2355       if (!fdate.is_open()) {
2356          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
2357          return;
2358       }
2359       const char date[64];
2360       fdate.getline(date,64);
2361       fdate.close();
2362       gSystem->Exec("rm date.tmp");
2363       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
2364    } else {
2365       kTrainName = Form("train_%s", kTrainName.Data());
2366    }
2367    TString cdir = gSystem->WorkingDirectory();
2368    gSystem->MakeDirectory(kTrainName);
2369    gSystem->ChangeDirectory(kTrainName);
2370    ofstream out;
2371    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
2372    if (out.bad()) {
2373       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
2374       return;
2375    }
2376    out << "{" << endl;
2377    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
2378    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
2379    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
2380    if (kProofUseAFPAR)
2381       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
2382    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
2383    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
2384    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
2385    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
2386    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
2387    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
2388    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
2389    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2390    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
2391    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
2392    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
2393    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
2394    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
2395    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
2396    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
2397    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
2398    out << "   kUseMC           = " << kUseMC << ";" << endl;
2399    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
2400    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
2401    out << "   kUseTR           = " << kUseTR << ";" << endl;
2402    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
2403    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
2404    out << "   // Analysis modules" << endl;
2405    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
2406    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
2407    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
2408    out << "   iJETAN          = " << iJETAN << ";" << endl;
2409    out << "// Configuration fot the wagons" << endl;
2410    out << "}" << endl;
2411    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
2412    gSystem->ChangeDirectory(cdir);
2413 }
2414
2415 //______________________________________________________________________________
2416 Bool_t LoadConfig(const char *filename)
2417 {
2418 // Read train configuration from file
2419    if (gSystem->AccessPathName(filename)) {
2420       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
2421       return kFALSE;
2422    }
2423    gROOT->ProcessLine(Form(".x %s", filename));
2424    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
2425    return kTRUE;
2426 }
2427
2428 Bool_t PatchJDL(){
2429   Printf(">>> Patching JDL");
2430   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2431   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
2432   TGridJDL *jdl = gridHandler->GetGridJDL();
2433   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
2434   gridHandler->WriteJDL(kFALSE);
2435   Printf("<<<  Patching JDL");
2436   return kTRUE;
2437 }
2438
2439 Bool_t PatchAnalysisMacro(){
2440   Printf(">>> Patching AnalysisMacro");
2441   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
2442
2443   ifstream in1;
2444   in1.open(Form("%s.C_tmp", kTrainName.Data()));
2445   char cLine[250];
2446   TString st;
2447   while(in1.getline(cLine,250)){
2448     st += cLine;
2449     st += "\n";
2450   }
2451   Int_t index= -1;
2452   index = st.Index("gSystem->Load(\"libPhysics\");");
2453   index += strlen("gSystem->Load(\"libPhysics\");");
2454   /*
2455     TObjArray *arr;
2456     TObjString *objstr;
2457     arr = anaLibs.Tokenize(" ");
2458     TIter next(arr);
2459
2460     add += "\n\n // added by CKB \n";
2461     while ((objstr=(TObjString*)next())){
2462       if(objstr->GetString().Contains("PWG3"))continue;
2463       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
2464     }
2465     delete arr;
2466     */
2467     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
2468   TString add = "";
2469
2470   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2471   add += "\n\n // added by CKB \n";
2472   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
2473   add += "\n gSystem->AddIncludePath(\"./\"); \n";
2474   add += "\n gSystem->SetFPEMask(); \n";
2475
2476
2477   if(gGrid&&kPluginAliRootVersion.Length()==0){
2478     /*
2479     add += "\n // Dirty hack for TRD reference data \n";
2480     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2481     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2482     add += "\"); \n";
2483     */
2484   }
2485
2486   add += "// BKC \n\n";
2487   st.Insert(index,add.Data());
2488
2489   if(kUseDebug){
2490     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2491   }
2492
2493   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2494     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
2495     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2496     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2497   }
2498
2499   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
2500     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
2501     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2502     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
2503   }
2504
2505   ofstream out;
2506   out.open(Form("%s.C", kTrainName.Data()));
2507   if (out.bad()) {
2508     return kFALSE;
2509   }
2510   out << st << endl;
2511   Printf("<<< Patching AnalysisMacro");
2512
2513
2514
2515
2516
2517   Printf(">>> Patching Merge Macro");
2518   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
2519
2520   ifstream in2;
2521   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
2522   TString st2;
2523   while(in2.getline(cLine,250)){
2524     st2 += cLine;
2525     st2 += "\n";
2526   }
2527   index = st2.Index("gSystem->Load(\"libPhysics\");");
2528   index += strlen("gSystem->Load(\"libPhysics\");");
2529   TString add2 = "";
2530   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
2531   if(gGrid&&kPluginAliRootVersion.Length()==0){
2532     /*
2533     add2 += "\n // Dirty hack for TRD reference data \n";
2534     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2535     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2536     add2 += "\"); \n";
2537     */
2538   }
2539   add2 += "// BKC \n\n";
2540   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2541   st2.Insert(index,add.Data());
2542
2543
2544   if(kUseDebug){
2545     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2546   }
2547
2548   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2549     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
2550     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2551     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2552   }
2553
2554   // do not exclude the extra files from merign, this is done explicitly in this train script
2555   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2556   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2557   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
2558
2559
2560   ofstream out2;
2561   out2.open(Form("%s_merge.C", kTrainName.Data()));
2562   if (out2.bad()) {
2563     return kFALSE;
2564   }
2565   out2 << st2 << endl;
2566   Printf("<<< Patching Merging Macro");
2567
2568
2569
2570   return kTRUE;
2571
2572 }