2 /**************************************************************************
3 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
5 * Author: The ALICE Off-line Project. *
6 * Contributors are mentioned in the code where appropriate. *
8 * Permission to use, copy, modify and distribute this software and its *
9 * documentation strictly for non-commercial purposes is hereby granted *
10 * without fee, provided that the above copyright notice appears in all *
11 * copies and that both the copyright notice and this permission notice *
12 * appear in the supporting documentation. The authors make no claims *
13 * about the suitability of this software for any purpose. It is *
14 * provided "as is" without express or implied warranty. *
15 **************************************************************************/
17 // Class for spectrum correction
18 // Subtraction of hadronic background, Unfolding of the data and
19 // Renormalization done here
20 // The following containers have to be set:
21 // - Correction framework container for real data
22 // - Correction framework container for MC (Efficiency Map)
23 // - Correction framework container for background coming from data
24 // - Correction framework container for background coming from MC
27 // Raphaelle Bailhache <R.Bailhache@gsi.de>
28 // Markus Fasel <M.Fasel@gsi.de>
34 #include <TObjArray.h>
41 #include <TGraphErrors.h>
48 #include "AliCFContainer.h"
49 #include "AliCFDataGrid.h"
50 #include "AliCFEffGrid.h"
51 #include "AliCFGridSparse.h"
52 #include "AliCFUnfolding.h"
55 #include "AliHFEInclusiveSpectrum.h"
56 #include "AliHFEInclusiveSpectrumQA.h"
57 #include "AliHFEcuts.h"
58 #include "AliHFEcontainer.h"
59 #include "AliHFEtools.h"
61 ClassImp(AliHFEInclusiveSpectrum)
63 //____________________________________________________________
64 AliHFEInclusiveSpectrum::AliHFEInclusiveSpectrum(const char *name):
65 AliHFECorrectSpectrumBase(name),
69 // Default constructor
72 fQA = new AliHFEInclusiveSpectrumQA("AliHFEInclusiveSpectrumQA");
75 //____________________________________________________________
76 AliHFEInclusiveSpectrum::AliHFEInclusiveSpectrum(const AliHFEInclusiveSpectrum &ref):
77 AliHFECorrectSpectrumBase(ref),
86 //____________________________________________________________
87 AliHFEInclusiveSpectrum &AliHFEInclusiveSpectrum::operator=(const AliHFEInclusiveSpectrum &ref){
89 // Assignment operator
95 //____________________________________________________________
96 void AliHFEInclusiveSpectrum::Copy(TObject &o) const {
100 AliHFEInclusiveSpectrum &target = dynamic_cast<AliHFEInclusiveSpectrum &>(o);
105 //____________________________________________________________
106 AliHFEInclusiveSpectrum::~AliHFEInclusiveSpectrum(){
113 //____________________________________________________________
114 Bool_t AliHFEInclusiveSpectrum::Init(const AliHFEcontainer *datahfecontainer, const AliHFEcontainer *mchfecontainer, const AliHFEcontainer *v0hfecontainer, const AliHFEcontainer */*bghfecontainer*/){
116 // Init what we need for the correction:
118 // Raw spectrum, hadron contamination
119 // MC efficiency maps, correlation matrix
120 // V0 efficiency if wanted
122 // This for a given dimension.
129 switch(fNbDimensions){
132 case 2: for(Int_t i = 0; i < 2; i++) dims[i] = i;
134 case 3: for(Int_t i = 0; i < 3; i++) dims[i] = i;
137 AliError("Container with this number of dimensions not foreseen (yet)");
142 // Data container: raw spectrum + hadron contamination
144 AliCFContainer *datacontainer = datahfecontainer->GetCFContainer("recTrackContReco");
145 AliCFContainer *contaminationcontainer = datahfecontainer->GetCFContainer("hadronicBackground");
146 if((!datacontainer) || (!contaminationcontainer)) return kFALSE;
147 AliCFContainer *datacontainerD = GetSlicedContainer(datacontainer, fNbDimensions, dims, -1, fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
148 AliCFContainer *contaminationcontainerD = GetSlicedContainer(contaminationcontainer, fNbDimensions, dims, -1, fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
149 if((!datacontainerD) || (!contaminationcontainerD)) return kFALSE;
150 SetContainer(datacontainerD,AliHFECorrectSpectrumBase::kDataContainer);
151 SetContainer(contaminationcontainerD,AliHFECorrectSpectrumBase::kBackgroundData);
153 Int_t dimqa = datacontainer->GetNVar();
155 for(Int_t i = 0; i < dimqa; i++) dimsqa[i] = i;
156 AliCFContainer *datacontainerDQA = GetSlicedContainer(datacontainer, dimqa, dimsqa, -1, fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
157 fQA->AddResultAt(datacontainerDQA,AliHFEInclusiveSpectrumQA::kDataProjection);
160 // MC container: ESD/MC efficiency maps + MC/MC efficiency maps
162 AliCFContainer *mccontaineresd = 0x0;
163 AliCFContainer *mccontainermc = 0x0;
164 mccontaineresd = mchfecontainer->MakeMergedCFContainer("sumesd","sumesd","MCTrackCont:recTrackContReco");
165 mccontainermc = mchfecontainer->MakeMergedCFContainer("summc","summc","MCTrackCont:recTrackContMC");
166 if((!mccontaineresd) || (!mccontainermc)) return kFALSE;
168 AliCFContainer *mccontaineresdD = GetSlicedContainer(mccontaineresd, fNbDimensions, dims, source, fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
169 AliCFContainer *mccontainermcD = GetSlicedContainer(mccontainermc, fNbDimensions, dims, source, fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
170 if((!mccontaineresdD) || (!mccontainermcD)) return kFALSE;
171 SetContainer(mccontainermcD,AliHFECorrectSpectrumBase::kMCContainerMC);
172 SetContainer(mccontaineresdD,AliHFECorrectSpectrumBase::kMCContainerESD);
175 // Correlation matrix
177 THnSparseF *mccorrelation = mchfecontainer->GetCorrelationMatrix("correlationstepbeforePID");
178 if(!mccorrelation) mccorrelation = mchfecontainer->GetCorrelationMatrix("correlationstepafterPID");
179 if(!mccorrelation) return kFALSE;
180 THnSparseF *mccorrelationD = GetSlicedCorrelation(mccorrelation, fNbDimensions, dims,fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
181 if(!mccorrelationD) {
182 printf("No correlation\n");
185 SetCorrelation(mccorrelationD);
187 fQA->AddResultAt(mccorrelation,AliHFEInclusiveSpectrumQA::kCMProjection);
190 // V0 container Electron, pt eta phi
193 AliCFContainer *containerV0 = v0hfecontainer->GetCFContainer("taggedTrackContainerReco");
194 if(!containerV0) return kFALSE;
195 AliCFContainer *containerV0Electron = GetSlicedContainer(containerV0, fNbDimensions, dims, AliPID::kElectron,fChargeChoosen,fTestCentralityLow,fTestCentralityHigh);
196 if(!containerV0Electron) return kFALSE;
197 SetContainer(containerV0Electron,AliHFECorrectSpectrumBase::kDataContainerV0);
201 fQA->DrawProjections();
206 //____________________________________________________________
207 Bool_t AliHFEInclusiveSpectrum::Correct(Bool_t subtractcontamination){
209 // Correct the spectrum for efficiency and unfolding
210 // with both method and compare
213 gStyle->SetPalette(1);
214 gStyle->SetOptStat(1111);
215 gStyle->SetPadBorderMode(0);
216 gStyle->SetCanvasColor(10);
217 gStyle->SetPadLeftMargin(0.13);
218 gStyle->SetPadRightMargin(0.13);
220 printf("Steps are: stepdata %d, stepMC %d, steptrue %d, stepV0after %d, stepV0before %d\n",fStepData,fStepMC,fStepTrue,fStepAfterCutsV0,fStepBeforeCutsV0);
222 ///////////////////////////
223 // Check initialization
224 ///////////////////////////
226 if((!GetContainer(kDataContainer)) || (!GetContainer(kMCContainerMC)) || (!GetContainer(kMCContainerESD))){
227 AliInfo("You have to init before");
231 if((fStepTrue < 0) && (fStepMC < 0) && (fStepData < 0)) {
232 AliInfo("You have to set the steps before: SetMCTruthStep, SetMCEffStep, SetStepToCorrect");
236 SetStepGuessedUnfolding(AliHFEcuts::kStepRecKineITSTPC + AliHFEcuts::kNcutStepsMCTrack);
238 AliCFDataGrid *dataGridAfterFirstSteps = 0x0;
239 //////////////////////////////////
240 // Subtract hadron background
241 /////////////////////////////////
242 AliCFDataGrid *dataspectrumaftersubstraction = 0x0;
243 if(subtractcontamination) {
244 dataspectrumaftersubstraction = SubtractBackground();
245 dataGridAfterFirstSteps = dataspectrumaftersubstraction;
248 ////////////////////////////////////////////////
249 // Correct for TPC efficiency from V0 if any
250 ///////////////////////////////////////////////
251 AliCFDataGrid *dataspectrumafterV0efficiencycorrection = 0x0;
252 AliCFContainer *dataContainerV0 = GetContainer(kDataContainerV0);
254 dataspectrumafterV0efficiencycorrection = CorrectV0Efficiency(dataspectrumaftersubstraction);
255 dataGridAfterFirstSteps = dataspectrumafterV0efficiencycorrection;
258 //////////////////////////////////////////////////////////////////////////////
259 // Correct for efficiency parametrized (if TPC efficiency is parametrized)
260 /////////////////////////////////////////////////////////////////////////////
261 AliCFDataGrid *dataspectrumafterefficiencyparametrizedcorrection = 0x0;
262 if(fEfficiencyFunction){
263 dataspectrumafterefficiencyparametrizedcorrection = CorrectParametrizedEfficiency(dataGridAfterFirstSteps);
264 dataGridAfterFirstSteps = dataspectrumafterefficiencyparametrizedcorrection;
270 THnSparse *correctedspectrum = Unfold(dataGridAfterFirstSteps);
271 if(!correctedspectrum){
272 AliError("No corrected spectrum\n");
276 /////////////////////
279 AliCFDataGrid *alltogetherCorrection = CorrectForEfficiency(dataGridAfterFirstSteps);
282 TGraphErrors* correctedspectrumD = Normalize(correctedspectrum);
283 TGraphErrors* alltogetherspectrumD = Normalize(alltogetherCorrection);
284 fQA->AddResultAt(correctedspectrumD,AliHFEInclusiveSpectrumQA::kFinalResultUnfolded);
285 fQA->AddResultAt(alltogetherspectrumD,AliHFEInclusiveSpectrumQA::kFinalResultDirectEfficiency);
291 //____________________________________________________________
292 AliCFDataGrid* AliHFEInclusiveSpectrum::SubtractBackground(){
294 // Apply background subtraction
298 AliCFContainer *dataContainer = GetContainer(kDataContainer);
300 AliError("Data Container not available");
303 printf("Step data: %d\n",fStepData);
304 AliCFDataGrid *spectrumSubtracted = new AliCFDataGrid("spectrumSubtracted", "Data Grid for spectrum after Background subtraction", *dataContainer,fStepData);
306 AliCFDataGrid *dataspectrumbeforesubstraction = (AliCFDataGrid *) ((AliCFDataGrid *)GetSpectrum(GetContainer(kDataContainer),fStepData))->Clone();
307 dataspectrumbeforesubstraction->SetName("dataspectrumbeforesubstraction");
310 // Background Estimate
311 AliCFContainer *backgroundContainer = GetContainer(kBackgroundData);
312 if(!backgroundContainer){
313 AliError("MC background container not found");
317 Int_t stepbackground = 1;
318 AliCFDataGrid *backgroundGrid = new AliCFDataGrid("ContaminationGrid","ContaminationGrid",*backgroundContainer,stepbackground);
321 spectrumSubtracted->Add(backgroundGrid,-1.0);
324 TH1D *subtractedspectrum = (TH1D *) spectrumSubtracted->Project(0);
325 CorrectFromTheWidth(subtractedspectrum);
326 TH1D *rawspectrum = (TH1D *) dataspectrumbeforesubstraction->Project(0);
327 CorrectFromTheWidth(rawspectrum);
328 fQA->AddResultAt(subtractedspectrum,AliHFEInclusiveSpectrumQA::kAfterSC);
329 fQA->AddResultAt(rawspectrum,AliHFEInclusiveSpectrumQA::kBeforeSC);
330 fQA->DrawSubtractContamination();
332 return spectrumSubtracted;
335 //____________________________________________________________
336 AliCFDataGrid *AliHFEInclusiveSpectrum::CorrectParametrizedEfficiency(AliCFDataGrid* const bgsubpectrum){
339 // Apply TPC pid efficiency correction from parametrisation
342 // Data in the right format
343 AliCFDataGrid *dataGrid = 0x0;
345 dataGrid = bgsubpectrum;
349 AliCFContainer *dataContainer = GetContainer(kDataContainer);
351 AliError("Data Container not available");
354 dataGrid = new AliCFDataGrid("dataGrid","dataGrid",*dataContainer, fStepData);
356 AliCFDataGrid *result = (AliCFDataGrid *) dataGrid->Clone();
357 result->SetName("ParametrizedEfficiencyBefore");
358 THnSparse *h = result->GetGrid();
359 Int_t nbdimensions = h->GetNdimensions();
360 //printf("CorrectParametrizedEfficiency::We have dimensions %d\n",nbdimensions);
361 AliCFContainer *dataContainer = GetContainer(kDataContainer);
363 AliError("Data Container not available");
366 AliCFContainer *dataContainerbis = (AliCFContainer *) dataContainer->Clone();
367 dataContainerbis->Add(dataContainerbis,-1.0);
370 Int_t* coord = new Int_t[nbdimensions];
371 memset(coord, 0, sizeof(Int_t) * nbdimensions);
372 Double_t* points = new Double_t[nbdimensions];
374 ULong64_t nEntries = h->GetNbins();
375 for (ULong64_t i = 0; i < nEntries; ++i) {
377 Double_t value = h->GetBinContent(i, coord);
378 //Double_t valuecontainer = dataContainerbis->GetBinContent(coord,fStepData);
379 //printf("Value %f, and valuecontainer %f\n",value,valuecontainer);
381 // Get the bin co-ordinates given an coord
382 for (Int_t j = 0; j < nbdimensions; ++j)
383 points[j] = h->GetAxis(j)->GetBinCenter(coord[j]);
385 if (!fEfficiencyFunction->IsInside(points))
387 TF1::RejectPoint(kFALSE);
389 // Evaulate function at points
390 Double_t valueEfficiency = fEfficiencyFunction->EvalPar(points, NULL);
391 //printf("Value efficiency is %f\n",valueEfficiency);
393 if(valueEfficiency > 0.0) {
394 h->SetBinContent(coord,value/valueEfficiency);
395 dataContainerbis->SetBinContent(coord,fStepData,value/valueEfficiency);
397 Double_t error = h->GetBinError(i);
398 h->SetBinError(coord,error/valueEfficiency);
399 dataContainerbis->SetBinError(coord,fStepData,error/valueEfficiency);
407 AliCFDataGrid *resultt = new AliCFDataGrid("spectrumEfficiencyParametrized", "Data Grid for spectrum after Efficiency parametrized", *dataContainerbis,fStepData);
410 TH1D *afterE = (TH1D *) resultt->Project(0);
411 CorrectFromTheWidth(afterE);
412 TH1D *beforeE = (TH1D *) dataGrid->Project(0);
413 CorrectFromTheWidth(beforeE);
414 fQA->AddResultAt(afterE,AliHFEInclusiveSpectrumQA::kAfterPE);
415 fQA->AddResultAt(beforeE,AliHFEInclusiveSpectrumQA::kBeforePE);
416 fQA->AddResultAt(fEfficiencyFunction,AliHFEInclusiveSpectrumQA::kPEfficiency);
417 fQA->DrawCorrectWithEfficiency(AliHFEInclusiveSpectrumQA::kParametrized);
422 //____________________________________________________________
423 AliCFDataGrid *AliHFEInclusiveSpectrum::CorrectV0Efficiency(AliCFDataGrid* const bgsubpectrum){
426 // Apply TPC pid efficiency correction from V0
429 AliCFContainer *v0Container = GetContainer(kDataContainerV0);
431 AliError("V0 Container not available");
436 AliCFEffGrid* efficiencyD = new AliCFEffGrid("efficiency","",*v0Container);
437 efficiencyD->CalculateEfficiency(fStepAfterCutsV0,fStepBeforeCutsV0);
439 // Data in the right format
440 AliCFDataGrid *dataGrid = 0x0;
442 dataGrid = bgsubpectrum;
445 AliCFContainer *dataContainer = GetContainer(kDataContainer);
447 AliError("Data Container not available");
450 dataGrid = new AliCFDataGrid("dataGrid","dataGrid",*dataContainer, fStepData);
454 AliCFDataGrid *result = (AliCFDataGrid *) dataGrid->Clone();
455 result->ApplyEffCorrection(*efficiencyD);
458 TH1D *afterE = (TH1D *) result->Project(0);
459 CorrectFromTheWidth(afterE);
460 TH1D *beforeE = (TH1D *) dataGrid->Project(0);
461 CorrectFromTheWidth(beforeE);
462 TH1D* efficiencyDproj = (TH1D *) efficiencyD->Project(0);
463 fQA->AddResultAt(afterE,AliHFEInclusiveSpectrumQA::kAfterV0);
464 fQA->AddResultAt(beforeE,AliHFEInclusiveSpectrumQA::kBeforeV0);
465 fQA->AddResultAt(efficiencyDproj,AliHFEInclusiveSpectrumQA::kV0Efficiency);
466 fQA->DrawCorrectWithEfficiency(AliHFEInclusiveSpectrumQA::kV0);
472 //____________________________________________________________
473 THnSparse *AliHFEInclusiveSpectrum::Unfold(AliCFDataGrid* const bgsubpectrum){
476 // Return the unfolded spectrum
479 AliCFContainer *mcContainer = GetContainer(kMCContainerMC);
481 AliError("MC Container not available");
486 AliError("No Correlation map available");
491 AliCFDataGrid *dataGrid = 0x0;
493 dataGrid = bgsubpectrum;
497 AliCFContainer *dataContainer = GetContainer(kDataContainer);
499 AliError("Data Container not available");
503 dataGrid = new AliCFDataGrid("dataGrid","dataGrid",*dataContainer, fStepData);
507 AliCFDataGrid* guessedGrid = new AliCFDataGrid("guessed","",*mcContainer, fStepGuessedUnfolding);
508 THnSparse* guessedTHnSparse = ((AliCFGridSparse*)guessedGrid->GetData())->GetGrid();
511 AliCFEffGrid* efficiencyD = new AliCFEffGrid("efficiency","",*mcContainer);
512 efficiencyD->CalculateEfficiency(fStepMC,fStepTrue);
516 AliCFUnfolding unfolding("unfolding","",fNbDimensions,fCorrelation,efficiencyD->GetGrid(),dataGrid->GetGrid(),guessedTHnSparse,1.e-06,0,fNumberOfIterations);
517 if(fSetSmoothing) unfolding.UseSmoothing();
521 THnSparse* result = unfolding.GetUnfolded();
522 THnSparse* residual = unfolding.GetEstMeasured();
525 TH1D *residualh = (TH1D *) residual->Projection(0);
526 TH1D *beforeE = (TH1D *) dataGrid->Project(0);
527 TH1D* efficiencyDproj = (TH1D *) efficiencyD->Project(0);
528 TH1D *afterE = (TH1D *) result->Projection(0);
529 CorrectFromTheWidth(residualh);
530 CorrectFromTheWidth(beforeE);
531 CorrectFromTheWidth(afterE);
532 fQA->AddResultAt(residualh,AliHFEInclusiveSpectrumQA::kResidualU);
533 fQA->AddResultAt(afterE,AliHFEInclusiveSpectrumQA::kAfterU);
534 fQA->AddResultAt(beforeE,AliHFEInclusiveSpectrumQA::kBeforeU);
535 fQA->AddResultAt(efficiencyDproj,AliHFEInclusiveSpectrumQA::kUEfficiency);
536 fQA->DrawUnfolding();
538 return (THnSparse *) result->Clone();
541 //____________________________________________________________
542 AliCFDataGrid *AliHFEInclusiveSpectrum::CorrectForEfficiency(AliCFDataGrid* const bgsubpectrum){
545 // Apply unfolding and efficiency correction together to bgsubspectrum
548 AliCFContainer *mcContainer = GetContainer(kMCContainerESD);
550 AliError("MC Container not available");
555 AliCFEffGrid* efficiencyD = new AliCFEffGrid("efficiency","",*mcContainer);
556 efficiencyD->CalculateEfficiency(fStepMC,fStepTrue);
558 // Data in the right format
559 AliCFDataGrid *dataGrid = 0x0;
561 dataGrid = bgsubpectrum;
565 AliCFContainer *dataContainer = GetContainer(kDataContainer);
567 AliError("Data Container not available");
571 dataGrid = new AliCFDataGrid("dataGrid","dataGrid",*dataContainer, fStepData);
575 AliCFDataGrid *result = (AliCFDataGrid *) dataGrid->Clone();
576 result->ApplyEffCorrection(*efficiencyD);
579 TH1D *afterE = (TH1D *) result->Project(0);
580 CorrectFromTheWidth(afterE);
581 TH1D *beforeE = (TH1D *) dataGrid->Project(0);
582 CorrectFromTheWidth(beforeE);
583 TH1D* efficiencyDproj = (TH1D *) efficiencyD->Project(0);
584 fQA->AddResultAt(afterE,AliHFEInclusiveSpectrumQA::kAfterMCE);
585 fQA->AddResultAt(beforeE,AliHFEInclusiveSpectrumQA::kBeforeMCE);
586 fQA->AddResultAt(efficiencyDproj,AliHFEInclusiveSpectrumQA::kMCEfficiency);
587 fQA->DrawCorrectWithEfficiency(AliHFEInclusiveSpectrumQA::kMC);
593 //____________________________________________________________
594 void AliHFEInclusiveSpectrum::WriteResults(const char *filename)
600 AliCFContainer *dataContainer = GetContainer(kDataContainer);
601 AliCFContainer *mcContainer = GetContainer(kMCContainerMC);
602 TObject *unfolded = 0x0;
603 TObject *correctedspectrum = 0x0;
605 unfolded = fQA->GetResult(AliHFEInclusiveSpectrumQA::kFinalResultUnfolded);
606 correctedspectrum = fQA->GetResult(AliHFEInclusiveSpectrumQA::kFinalResultDirectEfficiency);
609 TFile *file = TFile::Open(filename,"recreate");
610 if(dataContainer) dataContainer->Write("data");
611 if(mcContainer) mcContainer->Write("mcefficiency");
612 if(fCorrelation) fCorrelation->Write("correlationmatrix");
613 if(unfolded) unfolded->Write("unfoldedspectrum");
614 if(correctedspectrum) correctedspectrum->Write("correctedspectrum");
615 if(fQA) fQA->Write("QAResults");