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fixed typo, added protection against numerical instability
[u/mrichter/AliRoot.git] / PWG4 / macros / AnalysisTrainPWG4Jets.C
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c38e3b95 1//===================== ANALYSIS TRAIN =========================================
2// To use: copy this macro to your work directory, modify the global part to match
3// your needs, then run root.
4// root[0] .L AnalysisTrain.C
5// Grid full mode as below (other modes: test, offline, submit, terminate)
121e4bd5 6// root[1] AnalysisTrainPWG-244Jets("grid", "full")
c38e3b95 7// CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
8// root[2] AnalysisTrainPWG4Jets("proof")
9// Local mode requires AliESds.root or AliAOD.root in ./data directory
10// root[3] AnalysisTrainPWG4Jets("local")
11// In proof and grid modes, a token is needed and sourcing the produced environment file.
12//
13// If 'saveTrain' flag is set, the train will generate a directory name and run
14// in this directory. A configuration file 'ConfigTrain.C' will be generated.
15// One can replay at any time the train via:
16// root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
17
18// For Usage with fastjet run in "offline" first and then "submit"
19// jdl and analysismacro are automatically patched after "offline" mode
20
21// =============================================================================
22// ### General Steering variables
23// =============================================================================
24//== general setup variables
25TString kTrainName = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
26TString kJobTag = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
27
28// Usage of par files ONLY in grid mode and ONLY if the code is not available
29// in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
30// To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
31// AliRoot.
32Bool_t kUsePAR = kFALSE; // use par files for extra libs
33Bool_t kUseCPAR = kFALSE; // use par files for common libs
34Bool_t kFillAOD = kFALSE; // switch of AOD filling for on the fly analysis
4721d8c5 35Int_t kSaveAOD = 8; // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
c38e3b95 36//== general input and output variables
9a5c5b1e 37
c38e3b95 38Int_t iAODanalysis = 1; // Analysis on input AOD's
39Int_t iAODhandler = 1; // Analysis produces an AOD or dAOD's
f4132e7d 40Int_t iCentralitySelection = 0; // Use the centrality
c38e3b95 41Int_t iESDfilter = 0; // ESD to AOD filter (barrel + muon tracks)
e84da0a5 42Int_t iPhysicsSelection = 1; // ESD to AOD filter (barrel + muon tracks)
39e7e8ab 43UInt_t iPhysicsSelectionFlag = 0; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
cfd02305 44Bool_t useTender = kFALSE; // use tender wagon
c38e3b95 45Bool_t kUseKinefilter = kFALSE; // use Kinematics filter
46Bool_t kUseMuonfilter = kFALSE; // use Kinematics filter
47TString kCommonOutputFileName = "PWG4_JetTasksOutput.root";
9748e967 48TString kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
c38e3b95 49
50
51//== general process variables
52
53// ### Other flags to steer the analysis
54//==============================================================================
9a5c5b1e 55Bool_t kSkipTerminate = kTRUE; // Do not call Teminate
c38e3b95 56Bool_t kUseDate = kFALSE; // use date in train name
57Bool_t kUseDebug = kTRUE; // activate debugging
46534866 58Int_t kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
59// From TError.h:
60// const Int_t kUnset = -1;
61// const Int_t kPrint = 0;
62// const Int_t kInfo = 1000;
63// const Int_t kWarning = 2000;
64// const Int_t kError = 3000;
65// const Int_t kBreak = 4000;
66// const Int_t kSysError = 5000;
67// const Int_t kFatal = 6000;
68Int_t kUseSysInfo = 0; // activate debugging
ebad39a9 69Long64_t kNumberOfEvents = 1234567890; // number of events to process from the chain
c38e3b95 70Bool_t kUseMC = kTRUE; // use MC info
71Bool_t kIsMC = kTRUE; // is MC info, if false it overwrites Use(AOD)MC
72Bool_t kUseAODMC = kTRUE; // use MC infA
73Bool_t kUseESDTags = kFALSE; // use ESD tags for selection
74Bool_t kUseTR = kFALSE; // use track references
75Bool_t kUseAODTags = kFALSE; // use AOD tags
76Bool_t kSaveTrain = kFALSE; // save train configuration as:
f4132e7d 77Bool_t kIsPbPb = kFALSE; // Pb+Pb
c38e3b95 78
9a5c5b1e 79
c38e3b95 80// ### Analysis modules to be included. Some may not be yet fully implemented.
81//==============================================================================
82Int_t iJETAN = 1; // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
83Int_t iDIJETAN = 1;
e6993a52 84Int_t iJETANLib = 1;
c38e3b95 85Int_t iPWG1QASym = 0; // Eva's QA task compiled on the fly...
86Int_t iPWG4JetTasks = 0; // all jet tasks flag for lib laoding
87Int_t iPWG4JetServices = 0; // jet spectrum analysis
88Int_t iPWG4JetSpectrum = 0; // jet spectrum analysis
58ef946c 89Int_t iPWG4JCORRAN = 0; // JCORRAN module
c38e3b95 90Int_t iPWG4UE = 0; // Underlying Event analysis
e0c120d9 91Int_t iPWG4LeadingUE = 0; // Underlying Event analysis
92Int_t iPWG4CorrectionsUE = 0; // Underlying Event analysis
c166d299 93Int_t iPWG4TmpSourceSara = 0; // Underlying Event analysis not in svn
aba42fcb 94Int_t iPWG4Fragmentation = 0; // Official Fragmentation
9f77f0ce 95Int_t iPWG4JetChem = 0; // Jet chemistry
c38e3b95 96Int_t iPWG4PtQAMC = 0; // Marta's QA tasks
97Int_t iPWG4PtSpectra = 0; // Marta's QA tasks
98Int_t iPWG4PtQATPC = 0; // Marta's QA tasks
4721d8c5 99Int_t iPWG4Cosmics = 0; // Marta's Cosmics Taks
c38e3b95 100Int_t iPWG4ThreeJets = 0; // Sona's thrust task
cc636095 101Int_t iPWG4QGSep = 0; // Sona's QG Separation task
102Int_t iPWG4Minijet = 0; // Eva's Mini Jet Task cluster task
b53f2e4f 103Int_t iPWG4KMeans = 0; // Andreas' KMeans task
d2e6cdd5 104Int_t iPWG4Cluster = 0; // CKB cluster task
4721d8c5 105Int_t iEMCUtilLibs = 0; // Flag to satisfy dependence on EMC utils
911a740f 106Int_t iPWG4PartCorrLibs = 0; // Gustavo's part corr analysis
c38e3b95 107Int_t iPWG4PartCorr = 0; // Gustavo's part corr analysis
d2e6cdd5 108Int_t iPWG4CaloQA = 0; // Gustavo's part corr analysis
109Int_t iPWG4JetCorr = 0; // Paul's jet corr analysis
911a740f 110Int_t iPWG4Tagged = 0; // Gustavo's part corr analysis
121e4bd5 111Int_t iPWG4omega3pi = 0; // Omega to 3 pi analysis (PWG4)
17d96675 112Int_t iPWG4GammaConvLib = 0; // Gamma Conversio
53c63663 113Int_t iPWG4GammaConv = 0; // Gamma Conversio
17d96675 114Int_t iPWG4CaloConv = 0; // Gamma Conversio
22e3ae6c 115Int_t kHighPtFilterMask = 32; // change depending on the used AOD Filter
e6993a52 116TString kDeltaAODJetName = "AliAOD.Jets.root";
4721d8c5 117TString kDeltaAODJCORRANName = "AliAOD.JCORRAN.root";
f4132e7d 118TString kDeltaAODPartCorrName = "AliAOD.PartCorr.root";
c38e3b95 119
120
121//==============================================================================
122// ### PROOF Steering varibales
123//==============================================================================
124//== proof setup variables
125TString kProofCluster = "alicecaf.cern.ch";
126Bool_t kProofUseAFPAR = kFALSE; // use AF special par file
127TString kProofAFversion = "AF-v4-17";
128//== proof input and output variables
129TString kProofDataSet = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
130Bool_t kProofSaveToAlien = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
131TString kProofOutdir = "";
132Bool_t kProofClearPackages = kFALSE;
133Int_t kProofEvents = 10000;
134Int_t kProofOffset = 0;
135//== proof process variables
136
137
138//==============================================================================
139// ### Grid plugin Steering varibiables
140//==============================================================================
141//== grid plugin setup variables
142Bool_t kPluginUse = kTRUE; // do not change
143Bool_t kPluginUseProductionMode = kFALSE; // use the plugin in production mode
39e7e8ab 144TString kPluginRootVersion = "v5-27-06b"; // *CHANGE ME IF MORE RECENT IN GRID*
d3af0232 145TString kPluginAliRootVersion = "v4-19-15-AN"; // *CHANGE ME IF MORE RECENT IN GRID*
9a5c5b1e 146Bool_t kPluginMergeViaJDL = kTRUE; // merge via JDL
147Bool_t kPluginFastReadOption = kFALSE; // use xrootd tweaks
148Bool_t kPluginOverwriteMode = kTRUE; // overwrite existing collections
dc6a7461 149Int_t kPluginOutputToRunNumber = 1; // write the output to subdirs named after run number
c38e3b95 150// TString kPluginExecutableCommand = "root -b -q";
151TString kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
9a5c5b1e 152
c38e3b95 153// == grid plugin input and output variables
154TString kGridDatadir = "/alice/sim/PDC_08b/LHC09a1/AOD/";
9748e967 155Int_t kGridMaxRunsFromList = 999999999;
4d16db9c 156Int_t kGridOffsetRunFromList = 0; // skip the first n runs from the list
c38e3b95 157TString kGridLocalRunList = "";
158TString kGridOutdir = ""; // AliEn output directory. If blank will become output_<kTrainName>
3878a941 159TString kGridDataSet = ""; // sub working directory not to confuse different run xmls
9748e967 160Int_t kGridRunRange[2] = {0, -1}; // Set the run range
c38e3b95 161TString kGridRunPattern = "%03d"; // important for leading zeroes!!
162TString kGridPassPattern = "";
163TString kGridExtraFiles = ""; // files that will be added to the input list in the JDL...
9748e967 164Int_t kGridMaxMergeFiles = 12; // Number of files merged in a chunk grid run range
c38e3b95 165TString kGridMergeExclude = "AliAOD.root"; // Files that should not be merged
6408fe42 166TString kGridOutputStorages = "disk=2"; // Make replicas on the storages
c38e3b95 167// == grid process variables
c28abe00 168Int_t kGridRunsPerMaster = 100; // Number of runs per master job
e84da0a5 169Int_t kGridFilesPerJob = 100; // Maximum number of files per job (gives size of AOD)
c38e3b95 170
171//==============================================================================
172// ### Local Steering variables
173//==============================================================================
174//== local setup variables
175//== local input and output variables
176TString kLocalXMLDataset = ""; // Change local xml dataset for local interactive analysis
177TString kLocalDataList = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
178// == local process variables
179
8ecf60e0 180TString kPluginMode;
c38e3b95 181
182
183// Temporaries.
184TString anaPars = "";
185TString anaLibs = "";
e84da0a5 186TString anaLibsExtra = "";
c38e3b95 187TString anaSources = "";
188// Function signatures
189class AliAnalysisAlien;
190
191//______________________________________________________________________________
192void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
193 const char *plugin_mode="",
4d16db9c 194 const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
c38e3b95 195{
196// Main analysis train macro. If a configuration file is provided, all parameters
197// are taken from there but may be altered by CheckModuleFlags.
3878a941 198
8ecf60e0 199 // these flag may be needed by the config file
200 kPluginMode = plugin_mode;
201
202 if (strlen(config_file) && !LoadConfig(config_file)) return;
4d16db9c 203 if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
204 if(iOffset)kGridOffsetRunFromList = iOffset;
205 if(iOffset)kProofOffset = iOffset;
206
3878a941 207
c38e3b95 208 TString smode(analysis_mode);
209 smode.ToUpper();
210 if (kSaveTrain)WriteConfig();
8ecf60e0 211 // Check compatibility of selected modules
c38e3b95 212 CheckModuleFlags(smode);
ebad39a9 213 // gROOT->ProcessLine(".trace");
c38e3b95 214
215 printf("==================================================================\n");
216 printf("=========== RUNNING ANALYSIS TRAIN %s IN %s MODE ==========\n", kTrainName.Data(),smode.Data());
217 printf("==================================================================\n");
9748e967 218 printf("= Configuring analysis train for: =\n");
c38e3b95 219 if (iAODanalysis) printf("= AOD analysis =\n");
9748e967 220 else printf("= ESD analysis =\n");
221 if (iPhysicsSelection) printf("= Physics selection =\n");
f4132e7d 222 if(iCentralitySelection)printf("= Centrality selection =\n");
cfd02305 223 if (useTender) printf("= Using tender =\n");
c38e3b95 224 if (iESDfilter) printf("= ESD filter =\n");
225 if (iJETAN) printf("= Jet analysis =\n");
226 printf("==================================================================\n");
9748e967 227
228 char *printMask = ":: %20s %10d\n";
229 printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
230 printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
231 printf(printMask,"MC truth", (UInt_t)kUseMC);
232 printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
233 printf(printMask,"track refs", (UInt_t)kUseTR);
234 printf(printMask,"tags", (UInt_t)kUseESDTags);
235 printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
236 printf(printMask,"debugging", (UInt_t)kUseDebug);
237 printf(printMask,"PAR files", (UInt_t)kUsePAR);
238 printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
239 printf(printMask,"PWG1 QA sym", iPWG1QASym);
240 printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
aba42fcb 241 printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
9748e967 242 printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
243 printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
244 printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
245 printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
246 printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
247 printf(printMask,"PWG4 UE",iPWG4UE);
e0c120d9 248 printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
9748e967 249 printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
250 printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
251 printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
252 printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
253 printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
254 printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
cc636095 255 printf(printMask,"PWG4 QGSep",iPWG4QGSep);
256 printf(printMask,"PWG4 Minijet",iPWG4Minijet);
9748e967 257 printf(printMask,"PWG4 KMeans",iPWG4KMeans);
258 printf(printMask,"PWG4 Cluster",iPWG4Cluster);
259 printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
260 printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
261 printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
262 printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
263 printf(printMask,"PWG4 Tagged",iPWG4Tagged);
264 printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
265 printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
17d96675 266 printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
9748e967 267 printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
3878a941 268
c38e3b95 269 //==========================================================================
270 // Connect to back-end system
271 if (!Connect(smode)) {
272 ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
273 return;
274 }
275
276 // Load common libraries and set include path
277 if (!LoadCommonLibraries(smode)) {
278 ::Error("AnalysisTrain", "Could not load common libraries");
279 return;
280 }
3878a941 281
282
c38e3b95 283
284 // Make the analysis manager and connect event handlers
e84da0a5 285 AliAnalysisManager *mgr = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
c38e3b95 286 if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
287 if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
4a6f59cb 288 mgr->SetNSysInfo(0);
c38e3b95 289 if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
53c63663 290 if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
9a5c5b1e 291 mgr->SetSkipTerminate(kSkipTerminate);
4a6f59cb 292
c38e3b95 293 // Load analysis specific libraries
294 if (!LoadAnalysisLibraries(smode)) {
295 ::Error("AnalysisTrain", "Could not load analysis libraries");
296 return;
297 }
298
299 // Create input handler (input container created automatically)
300 if (iAODanalysis) {
301 // AOD input handler
302 AliAODInputHandler *aodH = new AliAODInputHandler();
303 mgr->SetInputEventHandler(aodH);
e6993a52 304 if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
305 if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
c38e3b95 306 } else {
307 // ESD input handler
308 AliESDInputHandler *esdHandler = new AliESDInputHandler();
309 if (kUseESDTags) esdHandler->SetReadTags();
c166d299 310 esdHandler->SetReadFriends(kFALSE);
c38e3b95 311 mgr->SetInputEventHandler(esdHandler);
4a6f59cb 312 // if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
c166d299 313
c38e3b95 314 }
f4d11ac8 315
c38e3b95 316 // Monte Carlo handler
317 if (kUseMC && !iAODanalysis) {
318 AliMCEventHandler* mcHandler = new AliMCEventHandler();
319 mgr->SetMCtruthEventHandler(mcHandler);
320 mcHandler->SetReadTR(kUseTR);
321 }
322 // AOD output container, created automatically when setting an AOD handler
323 if (iAODhandler) {
324 // AOD output handler
325 AliAODHandler* aodHandler = new AliAODHandler();
326 aodHandler->SetOutputFileName("AliAOD.root");
6408fe42 327 aodHandler->SetFillAODforRun(kFillAOD);
121e4bd5 328 //
f4132e7d 329 mgr->SetOutputEventHandler(aodHandler);
c38e3b95 330 AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
331 cout_aod->SetSpecialOutput();
332 }
333 // Debugging if needed
b03b08a3 334
3878a941 335 if (kUseDebug){
336 mgr->SetDebugLevel(3);
337 }
4721d8c5 338 if(kUseSysInfo>0){
339 mgr->RegisterExtraFile("syswatch.root");
340 if(kGridMergeExclude.Length())kGridMergeExclude += " ";
341 kGridMergeExclude += "syswatch.root";
342 }
b03b08a3 343 else{
344 AliLog::SetGlobalLogLevel(AliLog::kError);
345 }
46534866 346
347
c38e3b95 348 //==========================================================================
349 // Create the chain. In this example it is created only from ALIEN files but
350 // can be done to work in batch or grid mode as well.
351 TChain *chain = CreateChain(smode, plugin_mode);
352
353 //==========================================================================
354 // Load the tasks configuration macros for all wagons. These files are supposed now to be
355 // in the current workdir, but in AliEn they will be in the file catalog,
356 // mapped from AliRoot and pecified in the jdl input list.
357
358 // For now connection to top input container and common AOD output container
359 // is done in this macro, but in future these containers will be connected
360 // from each task configuration macro.
cfd02305 361
362 //
363 // Tender and supplies. Needs to be called for every event.
364 //
365 if (useTender) {
366 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
367 AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
368 // tender->SelectCollisionCandidates();
369 tender->SetDebugLevel(2);
370 }
371
372
373
e84da0a5 374 if(iPhysicsSelection && !iAODanalysis){
d2e6cdd5 375 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
39e7e8ab 376 Int_t iTriggerHIC = 0;
377 Bool_t rejectBkg = true;
f4132e7d 378 if(kIsPbPb){
39e7e8ab 379 iTriggerHIC = 2;
380 rejectBkg = false; // for the moment...
381 }
382 AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
383 iPhysicsSelectionFlag = AliVEvent::kMB;
e84da0a5 384 }
385
f4132e7d 386 if(iCentralitySelection){
387
388 // has to run before AOD filter
389 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCentralitySelection.C");
390 const char* file1="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161_v4.root";
391 const char* file2="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161_v4.root";
392 AliCentralitySelectionTask *taskC = AddTaskCentralitySelection(file1,file2);
393 if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
394 }
395
c38e3b95 396 if (iESDfilter && !iAODanalysis) {
397 // ESD filter task configuration.
ebad39a9 398 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
c38e3b95 399 AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
17d96675 400 taskesdfilter->SetEnableFillAOD(kFALSE);
f4132e7d 401
4721d8c5 402 if(kIsMC){
403 mgr->RegisterExtraFile("pyxsec_hists.root");
404 if(kGridMergeExclude.Length())kGridMergeExclude += " ";
405 kGridMergeExclude += "pyxsec_hists.root";
406
407 }
c38e3b95 408 }
409
410 // AOD tags
411 if (kUseAODTags) {
412 AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
413 mgr->AddTask(tagTask);
414 AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag", TTree::Class(),
415 AliAnalysisManager::kOutputContainer, "AOD.tag.root");
416 mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
417 mgr->ConnectOutput(tagTask, 1, coutTags);
418 }
419
420 // Jet analysis
421 if (iJETAN) {
422 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
423 AliAnalysisTaskJets *taskjets = 0;
424 if(iJETAN&1)taskjets = AddTaskJets(kHighPtFilterMask);
b53f2e4f 425 if(iJETAN&2){
426 UInt_t selection = 0;
17d96675 427 if(!kFillAOD){
428 selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time
429 selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
430 }
431 else {
432 selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time;
433 selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
434 }
b53f2e4f 435 AddTaskJetsDelta(kDeltaAODJetName.Data(),kHighPtFilterMask,kUseAODMC,selection);
e0c120d9 436 AddTaskJets("AOD","FASTKT",0.2,kHighPtFilterMask);
b53f2e4f 437 }
c38e3b95 438 if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
f4132e7d 439 if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
c38e3b95 440 }
441
bd80a748 442 if(iPWG4Cluster){
443 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
444 AliAnalysisTaskJetCluster *taskCl = 0;
445 if(iPWG4Cluster&1){
f4132e7d 446
447 if(kIsPbPb){
448 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data()); // this one is for the background random jets
449 taskCl->SetBackgroundCalc(kTRUE);
450 taskCl->SetGhostEtamax(0.9);
451 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data()); // this one is for the background random jets
452 taskCl->SetBackgroundCalc(kTRUE);
453 taskCl->SetGhostEtamax(0.9);
454 }
455 else{
456 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
457 taskCl->SetBackgroundCalc(kTRUE);
458 }
459
460 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data());
461 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data());
d4e8abc5 462
463 if(kUseAODMC){
f4132e7d 464 taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
465 taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data()); // this one is for the background jets
466 taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data()); // this one is for the background random jets
467 taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data()); // this one is for the background random jets
d4e8abc5 468 }
8ecf60e0 469
bd80a748 470 if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
471 }
472 if(iPWG4Cluster&2){
473 UInt_t selection = 0;
474 if(!iAODanalysis) selection = 0xffffff;
475 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
f4132e7d 476 if(kIsPbPb){
477 selection&=~(1<<2); // exluded R = .04 already the dafault
478 selection&=~(1<<4); // exluded R = .04 already the dafault
479 }
480 else{
481 selection&=~(1<<6); // exluded R = .04 already the dafault
482 }
39e7e8ab 483 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,"KT",selection);
bd80a748 484 }
485 if(iPWG4Cluster&4){
486 UInt_t selection = 0;
487 if(!iAODanalysis){
488 selection = 0xffffff;
489 selection &= ~(1<<1)&~(1<<3)&~(1<<5)&~(1<<7)&~(1<<9);
490 }
491 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
f4132e7d 492 selection&=~(1<<2); // exluded R = .04 already the dafault
d4e8abc5 493 selection&=~(1<<4); // exluded R = .04 already the dafault
39e7e8ab 494 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,"ANTIKT",selection);
8ecf60e0 495 // AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"ANTIKT",0.4,0,1);
bd80a748 496
497 }
498 }
499
c38e3b95 500 if (iDIJETAN) {
501 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
502 AliAnalysisTaskDiJets *taskdijets = 0;
82ebd295 503 if(iDIJETAN&1)taskdijets = AddTaskDiJets();
c38e3b95 504 if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
82ebd295 505 if(iDIJETAN&2){
506 taskdijets = AddTaskDiJets("jetsAOD_CDF07");
507 taskdijets = AddTaskDiJets("jetsAOD_DA07");
508 taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
509 taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
510 taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
511 taskdijets = AddTaskDiJets("jetsAOD_UA107");
512 }
c38e3b95 513 }
514
c38e3b95 515 if(iPWG1QASym){
5dbdc61f 516 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
c38e3b95 517 AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
518 if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
121e4bd5 519 }
c38e3b95 520
121e4bd5 521
522
523 if(iPWG4TmpSourceSara){
524 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
525 AliAnalysisTaskEta *taskEta = AddTaskEta();
526 if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
c38e3b95 527 }
528
aba42fcb 529 if(iPWG4Fragmentation){
530 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
8be7acf2 531 AliAnalysisTaskFragmentationFunction *taskFrag = 0;
532 if(kUseAODMC){
533 taskFrag = AddTaskFragmentationFunction(1<<1,kHighPtFilterMask);
534 taskFrag = AddTaskFragmentationFunction(1<<2,kHighPtFilterMask);
5fde4a38 535 // taskFrag = AddTaskFragmentationFunction(1<<3,kHighPtFilterMask);
cfd02305 536 taskFrag = AddTaskFragmentationFunction(1<<5,kHighPtFilterMask);
537 taskFrag = AddTaskFragmentationFunction(1<<11); // w/o acceptance cuts
c2658535 538 taskFrag = AddTaskFragmentationFunction(1<<12); // with acceptance cuts
539 // anti-kt
540 taskFrag = AddTaskFragmentationFunction(1<<21); // w/o acceptance cuts
541 taskFrag = AddTaskFragmentationFunction(1<<22); // with acceptance cuts
542
8be7acf2 543 }
544 else{
545 taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask);
c2658535 546 taskFrag = AddTaskFragmentationFunction(1<<10,kHighPtFilterMask);
547 taskFrag = AddTaskFragmentationFunction(1<<20,kHighPtFilterMask);
8be7acf2 548 }
549
aba42fcb 550 if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
c166d299 551 }
552
c580ebbb 553
9f77f0ce 554 if(iPWG4JetChem){
555 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
f4132e7d 556 AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
c580ebbb 557 if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
558 }
559
560
c38e3b95 561 if(iPWG4JetServices){
562 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
563 AliAnalysisTaskJetServices *taskjetServ = 0;
564 taskjetServ = AddTaskJetServices();
565 if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
53c63663 566 if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
27cdf9c4 567 else taskjetServ->SetRunRange(110000,160000);
568 taskjetServ->SetMCData(kIsMC);
dc6a7461 569 taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
39e7e8ab 570 taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
9f77f0ce 571 taskjetServ->SetDebugLevel(0);
f4132e7d 572 taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
573 if(kIsPbPb){
574 taskjetServ->SetFilterAODCollisions(kTRUE);
575 }
c38e3b95 576 }
577
c38e3b95 578 if(iPWG4JetSpectrum){
579 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
580 AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
17d96675 581
f4132e7d 582 TString cBack;
583 if(kIsPbPb){
584 cBack = "jeteventbackground_clustersAOD_KT04";
585 }
586 else{
587 cBack = "jeteventbackground_clustersAOD_KT06";
588 }
589
6bd3fdae 590 if(iPWG4JetSpectrum&1){
f4132e7d 591 // add the dfault jet finders with R = 0.4
592 UInt_t iSelection = 0xfffff;
593 taskJetSpectrum = AddTaskJetSpectrum2Delta(kHighPtFilterMask,kUseAODMC,iPhysicsSelectionFlag,iSelection,0,kTRUE,cBack.Data()); // bug fixed 10.11.10
b53f2e4f 594 }
e6993a52 595 if(iPWG4JetSpectrum&2){
6bd3fdae 596 if(kIsMC){
597 UInt_t eventSelection = AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
598 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
39e7e8ab 599 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
600 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
6bd3fdae 601
602 eventSelection = AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
603 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
39e7e8ab 604 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
6bd3fdae 605
606 eventSelection = AliAnalysisHelperJetTasks::kNone;
39e7e8ab 607 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
608 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
f4132e7d 609 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
17d96675 610 }
6bd3fdae 611 else{
612 UInt_t eventSelection = AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
613 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
39e7e8ab 614 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
6bd3fdae 615 eventSelection = AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
616 if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
39e7e8ab 617 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelectionFlag,eventSelection);
6bd3fdae 618 }
619 }
39e7e8ab 620 if(iPWG4JetSpectrum&4){
f4132e7d 621 // central events backgrounds... just for testing...
622 if(kIsPbPb){
623 taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","",cBack.Data(),kHighPtFilterMask,iPhysicsSelectionFlag,0,kTRUE,1,1);
624 taskjetSpectrum->SetDebugLevel(10);
625 }
e6993a52 626 }
6bd3fdae 627 if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
f4132e7d 628
c38e3b95 629 }
6bd3fdae 630
631
58ef946c 632 if(iPWG4JCORRAN){
633 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
4721d8c5 634 AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
58ef946c 635 if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
4721d8c5 636 else{
637 if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
638 }
58ef946c 639 }
640
c38e3b95 641 if(iPWG4UE){
642 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
643 AliAnalysisTaskUE *taskUE = 0;
644 if(iPWG4UE&1)taskUE = AddTaskUE();
645 if(iPWG4UE&2){
94ee88d4 646 taskUE =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
17d96675 647 // taskUE =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
94ee88d4 648 taskUE =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
17d96675 649 // taskUE =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
94ee88d4 650 taskUE =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
651 taskUE =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
17d96675 652 // taskUE =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
58ef946c 653 taskUE =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
654 taskUE =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
c38e3b95 655 }
2bb1f4ca 656
c38e3b95 657 if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
658 }
e0c120d9 659
660 if(iPWG4LeadingUE){
661 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
662 AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
663 if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
27cdf9c4 664 // taskLeadingUE->SetFilterBit(64);
e0c120d9 665 }
666
667
9748e967 668 if(iPWG4CorrectionsUE){
669 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
670 AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
671 if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
672 if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
673 }
c38e3b95 674
675 if(iPWG4ThreeJets){
676 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
677 AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
678 if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
679 }
cc636095 680 if(iPWG4QGSep){
681 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
682 AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
683 if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
684 }
685
686
687 if(iPWG4Minijet){
688 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
4d16db9c 689 AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
cc636095 690 // if we ha highmult trigger add another task
691 if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
692 }
693
694
c38e3b95 695 if(iPWG4PtQAMC){
696 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
f87effcf 697 AliPWG4HighPtQAMC *taskQAMC = 0;
698 if(kUseMC){
699 if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
700 if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
701 }
c38e3b95 702 if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
703 }
704
705 if(iPWG4PtQATPC){
706 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
10295ac3 707 AliPWG4HighPtQATPConly *taskQATPC = 0;
b1cd0099 708 if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
709 if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
10295ac3 710
711 if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
c38e3b95 712 }
3878a941 713
1f329128 714 if(iPWG4Cosmics){
715 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
716
717 AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
718 taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
719
720 if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
721 }
722
723
c38e3b95 724 if(iPWG4PtSpectra){
725 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
b1cd0099 726 AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra(kGridDataSet.Data());
c38e3b95 727 if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
728 }
b53f2e4f 729 if(iPWG4KMeans){
730 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
731 AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
732 if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
733 }
734
c38e3b95 735 if(iPWG4PartCorr){
736 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
14526afb 737 AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
c38e3b95 738 if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
14526afb 739 AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
c38e3b95 740 if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
4721d8c5 741 if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
121e4bd5 742 }
743
d2e6cdd5 744 if(iPWG4CaloQA){
745 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
9748e967 746 AliAnalysisTaskParticleCorrelation *taskcaloQA = AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
d2e6cdd5 747 if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
aba42fcb 748 // if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
d2e6cdd5 749 }
750
d2e6cdd5 751 if(iPWG4JetCorr){
752 // using namespace JetCorrelHD;
d3af0232 753 TString cdir = gSystem->WorkingDirectory();
754 gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
d2e6cdd5 755 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
756 AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
d3af0232 757 gSystem->ChangeDirectory(cdir);
c166d299 758 if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel cannot run for this train conditions - EXCLUDED");
d2e6cdd5 759 }
760
911a740f 761 if(iPWG4Tagged){
762 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
763 AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
58ef946c 764 taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
911a740f 765 if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons cannot run for this train conditions - EXCLUDED");
766 }
121e4bd5 767 if (iPWG4omega3pi) {
768 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
769 AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
770 if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
771 for these train conditions - EXCLUDED");
772 }
773
53c63663 774 // PWG4 gamma conversion analysis
775 if (iPWG4GammaConv) {
776 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
777 TString cdir = gSystem->WorkingDirectory();
778 gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
779 // TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
58ef946c 780 // TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
781 // TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
b0a36f28 782 TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
27cdf9c4 783 // TString kGCAnalysisCutSelectionId="9003562000100310";
cfd02305 784 // TString kGCAnalysisCutSelectionId="9003562000100312";
785 // gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
53c63663 786 if(!kIsMC)gcArguments += " -mc-off";
787 AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
788 gSystem->ChangeDirectory(cdir);
121e4bd5 789 taskGammaConversion->SelectCollisionCandidates();
53c63663 790 if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
791 }
792
17d96675 793 if (iPWG4CaloConv) {
794 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
795 AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
796 if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
797 }
798
799
3878a941 800
c38e3b95 801 //==========================================================================
802 // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
803 // Run the analysis
804 //
805 if (kPluginUse) {
806 AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
807 AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
808 }
809
810 if (mgr->InitAnalysis()) {
811 mgr->PrintStatus();
812 // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
e84da0a5 813 if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
c38e3b95 814 TString alien_workdir = gGrid->GetHomeDirectory();
815 if (iAODanalysis) alien_workdir += "analysisAOD";
816 else alien_workdir += "analysisESD";
3878a941 817 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
c38e3b95 818 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
e84da0a5 819 printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
c38e3b95 820 alien_workdir.Data(),gridhandler->GetGridOutputDir());
58ef946c 821
822 TString dest;
823 dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
824 if(AliAnalysisAlien::FileExists(dest.Data())){
825 // Printf("%s exist on grid removing...",dest.Data());
826 // gGrid->Rm(dest.Data());
827 }
828 TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
4721d8c5 829
830
831 TString dest;
832 dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
833 if(AliAnalysisAlien::FileExists(dest.Data())){
834 // Printf("%s exist on grid removing...",dest.Data());
835 // gGrid->Rm(dest.Data());
836 }
837 TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
838
58ef946c 839
73b7619a 840 dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
58ef946c 841 if(AliAnalysisAlien::FileExists(dest.Data())){
842 Printf("%s exist on grid removing...",dest.Data());
843 gGrid->Rm(dest.Data());
844 }
845 TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
9748e967 846 gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
c38e3b95 847 }
3878a941 848 AliLog::SetGlobalLogLevel(AliLog::kError);
c166d299 849 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
850 TFile * fM = TFile::Open("manager_local.root","RECREATE");
851 mgr->Write();
852 fM->Close();
853 }
46534866 854
855 // grmpf, aliroot error handler overwrites root
856 gErrorIgnoreLevel = kErrorIgnoreLevel;
857 if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
c38e3b95 858 StartAnalysis(smode, chain);
4a6f59cb 859 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
860 for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
861 mgr->ProfileTask(i);
862 }
863 }
c38e3b95 864 if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
e84da0a5 865 // Offline mode path files
866 // PatchJDL();
867 PatchAnalysisMacro();
868 }
c38e3b95 869
e84da0a5 870 if (kSaveTrain && smode=="GRID") {
871 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
872 TString alien_workdir = gGrid->GetHomeDirectory();
873 if (iAODanalysis) alien_workdir += "analysisAOD";
3878a941 874 else alien_workdir += "analysisESD";
875 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
e84da0a5 876 // kGridOutdir = gridhandler->GetGridOutputDir();
877 printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
c38e3b95 878 alien_workdir.Data());
e84da0a5 879 if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
880 gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
881 if (strcmp(plugin_mode, "test"))
882 TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
883 }
884 }
c38e3b95 885}
886
887//______________________________________________________________________________
888void StartAnalysis(const char *mode, TChain *chain) {
889// Start analysis.
890 Int_t imode = -1;
891 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
892 if (!strcmp(mode, "LOCAL")) imode = 0;
893 if (!strcmp(mode, "PROOF")) imode = 1;
894 if (!strcmp(mode, "GRID")) imode = 2;
895 switch (imode) {
896 case 0:
897 if (!chain) {
898 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
899 return;
900 }
82ebd295 901 mgr->StartAnalysis(mode, chain,kNumberOfEvents);
c38e3b95 902 return;
903 case 1:
904 if (!kProofDataSet.Length()) {
905 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
906 return;
907 }
908 mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
909 return;
910 case 2:
911 if (kPluginUse) {
912 if (!mgr->GetGridHandler()) {
913 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
914 return;
915 }
ebad39a9 916 mgr->StartAnalysis("grid",chain,kNumberOfEvents);
c38e3b95 917 } else {
918 if (!chain) {
919 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
920 return;
921 }
922 mgr->StartAnalysis(mode, chain);
ebad39a9 923 mgr->StartAnalysis(mode, chain,kNumberOfEvents);
c38e3b95 924 }
925 return;
926 }
927}
928
929//______________________________________________________________________________
930void CheckModuleFlags(const char *mode) {
931// Checks selected modules and insure compatibility
932 Int_t imode = -1;
933 if (!strcmp(mode, "LOCAL")) imode = 0;
934 if (!strcmp(mode, "PROOF")) imode = 1;
935 if (!strcmp(mode, "GRID")) imode = 2;
936
937
e84da0a5 938 if (kUseCPAR) {
939 kPluginAliRootVersion = ""; // NO aliroot if we use CPAR
940 }
c38e3b95 941
942 if (imode==1) {
943 if (!kUsePAR) {
944 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
945 kUsePAR = kTRUE;
946 }
947 }
948 if (imode != 2) {
949 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
950 kPluginUse = kFALSE;
951 }
952
953
954 if(!kIsMC){
955 // switch off anthin related to MC
956 kUseMC = 0;
957 kUseAODMC = 0;
958 kUseTR = kFALSE;
959 }
960
f4132e7d 961 // Decide if we have PbPb
962 if(kGridDataSet.CompareTo("LHC10h")==0) {
963 kIsPbPb = true;
964 }
965
966
967
c38e3b95 968 if (iAODanalysis) {
969 // AOD analysis
970 if (kUseMC)
971 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
972 if (kUseAODTags)
973 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
974 kUseMC = kFALSE;
975 kUseTR = kFALSE;
976 kUseAODTags = kFALSE;
977 if (iESDfilter)
978 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
979 iESDfilter = 0;
e84da0a5 980 if (iPhysicsSelection)
981 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
982 iPhysicsSelection = 0;
c38e3b95 983 if (!iAODhandler) {
984 if (iJETAN)
985 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
986 iJETAN = 0;
987 iDIJETAN = 0;
988 }
989 // Disable tasks that do not work yet on AOD data
58ef946c 990 if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
4d62ae1a 991 iPWG4JCORRAN = 0;
c38e3b95 992 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
993 iPWG4PtQAMC = 0;
994 if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
995 iPWG4PtQATPC = 0;
1f329128 996 if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
997 iPWG4Cosmics = 0;
998
c38e3b95 999 if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1000 iPWG4PtSpectra = 0;
b53f2e4f 1001 if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1002 iPWG4KMeans = 0;
d2e6cdd5 1003 if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1004 iPWG4JetCorr = 0;
c38e3b95 1005 if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1006 iPWG4PartCorr = 0;
d2e6cdd5 1007 if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1008 iPWG4CaloQA = 0;
911a740f 1009 if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1010 iPWG4Tagged = 0;
121e4bd5 1011 if (iPWG4omega3pi)
1012 ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1013 iPWG4omega3pi = 0;
c38e3b95 1014 if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
53c63663 1015 if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1016 iPWG4GammaConv = 0;
c38e3b95 1017 iPWG1QASym = 0;
f4132e7d 1018 iCentralitySelection = 0;
c38e3b95 1019 } else {
1020 // ESD analysis
f4132e7d 1021
1022 if(kIsPbPb){
1023 iCentralitySelection = 1;
1024 }
1025
c38e3b95 1026 if (!kUseMC){
1027 kUseTR = kFALSE;
1028
1029 if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1030 kUseKinefilter = kFALSE;
1031 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1032 iPWG4PtQAMC = 0;
9748e967 1033 if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1034 iPWG4CorrectionsUE = 0;
c38e3b95 1035 }
1036 if (!kUseTR) {
c166d299 1037 if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
b03b08a3 1038 iPWG4PtQAMC = 0;
c38e3b95 1039 }
e84da0a5 1040 if (iJETAN){
1041 iESDfilter=1;
1042 }
c38e3b95 1043 if (!iESDfilter){
1044 kUseKinefilter = kFALSE;
1045 kUseMuonfilter = kFALSE;
1046 }
1047 if(!iJETAN){
cc636095 1048 iPWG4JetSpectrum = iPWG4UE = iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
c38e3b95 1049 }
1050 }
cc636095 1051 iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
d2e6cdd5 1052 iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
17d96675 1053 iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1054
1055
1056 iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib;
e6993a52 1057 iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
17d96675 1058
c38e3b95 1059 if (iESDfilter) {iAODhandler=1;}
1060 if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1061 if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1062
1063
1064
1065}
1066
1067//______________________________________________________________________________
1068Bool_t Connect(const char *mode) {
1069// Connect <username> to the back-end system.
1070 Int_t imode = -1;
1071 if (!strcmp(mode, "LOCAL")) imode = 0;
1072 if (!strcmp(mode, "PROOF")) imode = 1;
1073 if (!strcmp(mode, "GRID")) imode = 2;
1074 TString username = gSystem->Getenv("alien_API_USER");
1075 switch (imode) {
1076 case 0:
1077 break;
1078 case 1:
1079 if (!username.Length()) {
1080 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1081 1. Have called: alien-token-init <username>\n \
1082 2. Have called: >source /tmp/gclient_env_$UID");
1083 return kFALSE;
1084 }
1085 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1086 username.Data(), kProofCluster.Data());
1087 gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1088// TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1089 TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1090 if (!gProof) {
1091 if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1092 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1093 return kFALSE;
1094 }
1095 if(kProofClearPackages)gProof->ClearPackages();
1096
1097 if(kProofSaveToAlien){
1098 TGrid::Connect("alien://");
1099 if (gGrid) {
1100 TString homedir = gGrid->GetHomeDirectory();
1101 TString workdir = homedir + kTrainName;
1102 if (!gGrid->Cd(workdir)) {
1103 gGrid->Cd(homedir);
1104 if (gGrid->Mkdir(workdir)) {
1105 gGrid->Cd(kTrainName);
1106 ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1107 }
1108 }
1109 gGrid->Mkdir("proof_output");
1110 gGrid->Cd("proof_output");
1111 kProofOutdir = Form("alien://%s", gGrid->Pwd());
1112 }
1113 }
1114 break;
1115 case 2:
1116 if (!username.Length()) {
1117 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1118 1. Have called: alien-token-init <username>\n \
1119 2. Have called: >source /tmp/gclient_env_$UID");
1120 return kFALSE;
1121 }
1122 if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1123 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1124 "When using the AliEn plugin it is preferable to define the \
1125 variable alien_CLOSE_SE in your environment.");
1126 return kFALSE;
1127 }
1128 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1129 username.Data());
1130 TGrid::Connect("alien://");
1131 if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1132 break;
1133 default:
1134 ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1135 return kFALSE;
1136 }
1137 ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1138 return kTRUE;
1139}
1140
1141//______________________________________________________________________________
1142Bool_t LoadCommonLibraries(const char *mode)
1143{
1144// Load common analysis libraries.
1145 Int_t imode = -1;
1146 if (!strcmp(mode, "LOCAL")) imode = 0;
1147 if (!strcmp(mode, "PROOF")) imode = 1;
1148 if (!strcmp(mode, "GRID")) imode = 2;
1149 if (!gSystem->Getenv("ALICE_ROOT")) {
ebad39a9 1150 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
c38e3b95 1151 return kFALSE;
1152 }
1153 Bool_t success = kTRUE;
1154 // ROOT libraries
1155 gSystem->Load("libTree.so");
1156 gSystem->Load("libGeom.so");
1157 gSystem->Load("libVMC.so");
1158 gSystem->Load("libPhysics.so");
1159
1160 // Load framework classes. Par option ignored here.
1161 switch (imode) {
1162 case 0:
1163 case 2:
1164 if (kUseCPAR) {
1165 success &= LoadLibrary("STEERBase", mode, kTRUE);
1166 success &= LoadLibrary("ESD", mode, kTRUE);
1167 success &= LoadLibrary("AOD", mode, kTRUE);
1168 success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1169 success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1170 success &= LoadLibrary("CORRFW", mode, kTRUE);
1171 } else {
1172 success &= LoadLibrary("libSTEERBase.so", mode);
1173 success &= LoadLibrary("libESD.so", mode);
1174 success &= LoadLibrary("libAOD.so", mode);
1175 success &= LoadLibrary("libANALYSIS.so", mode);
1176 success &= LoadLibrary("libANALYSISalice.so", mode);
1177 success &= LoadLibrary("libCORRFW.so", mode);
1178 gROOT->ProcessLine(".include $ALICE_ROOT/include");
1179 }
1180 break;
1181 case 1:
1182 Int_t ires = -1;
1183 if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1184 if (ires < 0) {
1185 success &= LoadLibrary("STEERBase", mode);
1186 success &= LoadLibrary("ESD", mode);
1187 success &= LoadLibrary("AOD", mode);
1188 success &= LoadLibrary("ANALYSIS", mode);
1189 success &= LoadLibrary("ANALYSISalice", mode);
1190 success &= LoadLibrary("CORRFW", mode);
1191 } else {
1192 ires = gProof->EnablePackage(kProofAFversion);
1193 if (ires<0) success = kFALSE;
1194 success &= LoadLibrary("CORRFW", mode);
1195 }
1196 break;
1197 default:
1198 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1199 return kFALSE;
1200 }
1201 if (success) {
1202 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: SUCCESS");
1203 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1204 gSystem->GetIncludePath());
1205 } else {
1206 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: FAILED");
1207 }
1208
1209 return success;
1210}
1211
1212//______________________________________________________________________________
1213Bool_t LoadAnalysisLibraries(const char *mode)
1214{
1215// Load common analysis libraries.
9748e967 1216 Bool_t success = kTRUE;
cfd02305 1217 if (useTender) {
1218 if (!LoadLibrary("TENDER", mode, kTRUE) ||
1219 !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1220 }
c38e3b95 1221 if (iESDfilter) {
b0a36f28 1222 /*
c38e3b95 1223 if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1224 !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
b0a36f28 1225 */
c38e3b95 1226 }
1227 // JETAN
e6993a52 1228 if (iJETANLib) {
b53f2e4f 1229 // this part needs some rework in case we do not need the fastjed finders for processing
1230 if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
c38e3b95 1231 if (!strcmp(mode, "PROOF")){
ef1e462f 1232 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
c38e3b95 1233 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1234 // problem when loading siscone copiled with different gcc version??
1235 // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1236 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1237 }
b53f2e4f 1238 if(!kUsePAR){
e84da0a5 1239 if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1240 if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1241 if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1242 if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1243 }
1244 else{
1245 // par files plus FASTJET needs some extra work... need to change
1246 // the loading sequence in the auto generated .C file
1247 if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1248 if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1249 if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1250 if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1251 }
c38e3b95 1252 if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1253 }
1254 if(iPWG4JetTasks){
c38e3b95 1255 if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1256 }
58ef946c 1257
c38e3b95 1258 if(iPWG1QASym){
99bfd7f7 1259 if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
c38e3b95 1260 }
121e4bd5 1261 if(iPWG4TmpSourceSara){
c166d299 1262 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
121e4bd5 1263 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1264 }
58ef946c 1265
9f77f0ce 1266 /*
1267 if(iPWG4JetChem){
c580ebbb 1268 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1269 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskJetChem.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1270 }
9f77f0ce 1271 */
c166d299 1272
4721d8c5 1273 if(iEMCUtilLibs){
1274 if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1275 !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1276 }
1277
911a740f 1278 if (iPWG4PartCorrLibs) {
4721d8c5 1279 if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
c38e3b95 1280 !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1281 }
4721d8c5 1282 if(iPWG4JCORRAN){
1283 // PWG4 particle correlations
1284 if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1285 }
d2e6cdd5 1286 if (iPWG4JetCorr) {
1287 if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1288 }
121e4bd5 1289 if (iPWG4omega3pi) {
1290 if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1291 }
17d96675 1292 if (iPWG4GammaConvLib) {
53c63663 1293 if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1294 }
c38e3b95 1295
1296 ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries: SUCCESS");
1297 return kTRUE;
1298}
1299
1300//______________________________________________________________________________
1301Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1302{
1303// Load a module library in a given mode. Reports success.
1304 Int_t imode = -1;
1305 Int_t result;
1306 TString smodule(module);
1307 if (!strcmp(mode, "LOCAL")) imode = 0;
1308 if (!strcmp(mode, "PROOF")) imode = 1;
1309 if (!strcmp(mode, "GRID")) imode = 2;
1310 TString mod(module);
1311 if (!mod.Length()) {
1312 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1313 return kFALSE;
1314 }
1315 // If a library is specified, just load it
1316 if (smodule.EndsWith(".so")) {
1317 mod.Remove(mod.Index(".so"));
1318 result = gSystem->Load(mod);
1319 if (result < 0) {
1320 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1321 return kFALSE;
1322 }
1323 if (rec) anaLibs += Form("%s.so ",mod.Data());
e84da0a5 1324 if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
c38e3b95 1325 return kTRUE;
1326 }
1327 // Check if the library is already loaded
1328 if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1329 return kTRUE;
1330 switch (imode) {
1331 case 0:
1332 case 2:
1333 if (kUsePAR) {
1334 result = SetupPar(module);
1335 if (rec) anaPars += Form("%s.par ", module);
1336 } else {
1337 result = gSystem->Load(Form("lib%s.so", module));
1338 if (rec) anaLibs += Form("lib%s.so ", module);
1339 }
1340 break;
1341 case 1:
1342 if(!gSystem->AccessPathName(module)){
1343 ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1344 gSystem->Exec(Form("rm -rf %s",module));
1345 }
1346 result = gProof->UploadPackage(module);
1347 if (result<0) {
1348 result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1349 if (result<0) {
1350 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1351 return kFALSE;
1352 }
1353 }
1354 result = gProof->EnablePackage(module);
1355 break;
1356 default:
1357 return kFALSE;
1358 }
1359 if (result < 0) {
1360 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1361 return kFALSE;
1362 }
1363 return kTRUE;
1364}
1365
1366
1367
1368//______________________________________________________________________________
1369Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1370{
1371// Load a module library in a given mode. Reports success.
1372 Int_t imode = -1;
1373 Int_t result = -1;
1374 if (!strcmp(mode, "LOCAL")) imode = 0;
1375 if (!strcmp(mode, "PROOF")) imode = 1;
1376 if (!strcmp(mode, "GRID")) imode = 2;
1377 TString ssource(source);
1378 TString basename = gSystem->BaseName(ssource.Data());
1379 if (!ssource.Length()) {
1380 ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1381 return kFALSE;
1382 }
4d62ae1a 1383 // we have a source code so compile it
c38e3b95 1384 if (ssource.EndsWith(".cxx")) {
1385 // need to copy it here other wise the path is also used on grid...
1386 ssource.Remove(ssource.Index(".cxx"));
1387 basename.Remove(basename.Index(".cxx"));
1388 Printf("LoadSources:: Copying... path %s{cxx,h}",ssource.Data());
1389 gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1390 gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1391 // Path to code
1392 // only needed for local compilation, in grid and proof mode
1393 // the task headers are uploaded
1394 // path.Remove(path.Index(gSystem->BaseName(path.Data())));
1395 // Printf("LoadSources:: Including path %s",path.Data());
1396 // if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1397 Printf("LoadSources:: Loading... path %s",basename.Data());
1398 switch (imode) {
1399 case 0:
b53f2e4f 1400 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1401 break;
1402 case 1:
b53f2e4f 1403 result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1404 break;
1405 case 2:
b53f2e4f 1406 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1407 if (rec){
1408 // what we want to compile
1409 anaSources += Form("%s.cxx ",basename.Data());
1410 // what we need as input...
1411 anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1412 }
1413 break;
1414 default:
1415 return kFALSE;
1416 }
1417 }
1418 if (result < 0) {
1419 ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1420 return kFALSE;
1421 }
1422 return kTRUE;
1423}
1424
1425
1426//______________________________________________________________________________
1427TChain *CreateChain(const char *mode, const char *plugin_mode)
1428{
1429// Create the input chain
1430 Int_t imode = -1;
1431 if (!strcmp(mode, "LOCAL")) imode = 0;
1432 if (!strcmp(mode, "PROOF")) imode = 1;
1433 if (!strcmp(mode, "GRID")) imode = 2;
1434 TChain *chain = NULL;
1435 // Local chain
1436 switch (imode) {
1437 case 0:
1438 if (iAODanalysis) {
1439 if (!kLocalXMLDataset.Length()) {
1440 // Local AOD
1441 chain = new TChain("aodTree");
1442 TString line;
1443 ifstream in;
1444 in.open(kLocalDataList.Data());
1445 while (in.good()) {
1446 in >> line;
1447 if (line.Length() == 0) continue;
1448 // cout << " line = " << line << endl;
1449 chain->Add(line.Data());
1450 }
1451 } else {
1452 // Interactive AOD
1453 chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1454 }
1455 } else {
1456 if (!kLocalXMLDataset.Length()) {
1457 // Local ESD
1458 chain = new TChain("esdTree");
1459 TString line;
1460 ifstream in;
1461 in.open(kLocalDataList.Data());
1462 while (in.good()) {
1463 in >> line;
1464 if (line.Length() == 0) continue;
1465 cout << " line = " << line << endl;
1466 chain->Add(line.Data());
1467 }
1468 } else {
1469 // Interactive ESD
1470 chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1471 }
1472 }
1473 break;
1474 case 1:
1475 break;
1476 case 2:
1477 if (kPluginUse) {
1478// AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1479// AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1480 } else {
1481 TString treeName = "esdTree";
1482 if (iAODanalysis) treeName = "aodTree";
1483 chain = CreateChainSingle("wn.xml", treeName);
1484 }
1485 break;
1486 default:
1487 }
1488 if (chain && chain->GetNtrees()) return chain;
1489 return NULL;
1490}
1491
1492//______________________________________________________________________________
1493TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1494{
1495 printf("*******************************\n");
1496 printf("*** Getting the ESD Chain ***\n");
1497 printf("*******************************\n");
1498 TAlienCollection * myCollection = TAlienCollection::Open(xmlfile);
1499
1500 if (!myCollection) {
1501 ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1502 return NULL ;
1503 }
1504
1505 TChain* chain = new TChain(treeName);
1506 myCollection->Reset() ;
1507 while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1508 chain->ls();
1509 return chain;
1510}
1511
1512//______________________________________________________________________________
1513Int_t SetupPar(char* pararchivename)
1514{
1515 if (!pararchivename || !strlen(pararchivename)) return -1;
1516 char processline[1024];
1517 if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1518 if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1519 ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
9748e967 1520 TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1521 Form("%s.par",pararchivename));
c38e3b95 1522 } else {
1523 ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1524 return -1;
1525 }
1526 }
1527 if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1528 gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1529
1530 TString ocwd = gSystem->WorkingDirectory();
1531 if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1532
1533 // check for BUILD.sh and execute
1534 if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1535 printf("*******************************\n");
1536 printf("*** Building PAR archive ***\n");
1537 printf("*******************************\n");
1538 if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1539 Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1540 return -1;
1541 }
1542 }
1543
1544 // check for SETUP.C and execute
1545 if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1546 printf("*******************************\n");
1547 printf("*** Setup PAR archive ***\n");
1548 printf("*******************************\n");
1549 gROOT->Macro("PROOF-INF/SETUP.C");
1550 }
1551 if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1552 return 0;
1553}
1554
1555//______________________________________________________________________________
1556AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1557{
1558// Check if user has a valid token, otherwise make one. This has limitations.
1559// One can always follow the standard procedure of calling alien-token-init then
1560// source /tmp/gclient_env_$UID in the current shell.
c8fb37dd 1561// if (!AliAnalysisGrid::CreateToken()) return NULL;
c38e3b95 1562 AliAnalysisAlien *plugin = new AliAnalysisAlien();
1563// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1564 plugin->SetRunMode(plugin_mode);
1565 if (kPluginUseProductionMode) plugin->SetProductionMode();
1566 plugin->SetJobTag(kJobTag);
e0c120d9 1567 plugin->SetNtestFiles(1);
c38e3b95 1568// plugin->SetPreferedSE("ALICE::NIHAM::File");
1569// Set versions of used packages
e84da0a5 1570 plugin->SetAPIVersion("V1.1x");
1571 // plugin->SetAPIVersion("V1.0x");
1572// plugin->SetAPIVersion("V2.4");
c38e3b95 1573 plugin->SetROOTVersion(kPluginRootVersion);
1574 plugin->SetAliROOTVersion(kPluginAliRootVersion);
1575// Declare input data to be processed.
1576// Method 1: Create automatically XML collections using alien 'find' command.
1577// Define production directory LFN
1578 plugin->SetGridDataDir(kGridDatadir.Data());
1579// Set data search pattern
1580 if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
c8fb37dd 1581 // else plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1582 else plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
c38e3b95 1583// ...then add run numbers to be considered
1584// plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1585 for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1586 Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1587 plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1588 }
1589
1590 if(kGridLocalRunList.Length()>0){
1591 ifstream in1;
1592 in1.open(kGridLocalRunList.Data());
1593 int iRun;
4d16db9c 1594 int icount = 0;
9a5c5b1e 1595 /*
e84da0a5 1596 char c;
1597 char cLine[250];
1598 while(!in1.eof()){
1599 c = in1.get();
1600 if ( (c >= '0') && (c <= '9') )
1601 {
1602 in1.putback (c);
1603 in1>>iRun;
1604 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1605 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1606 }
1607 else
1608 {
1609 in1.putback (c);
1610 in1.getline(cLine,250);
9a5c5b1e 1611
1612 }
1613 }
1614 */
9748e967 1615
1616 Int_t nRun = 0;
9a5c5b1e 1617
1618 // just use run numbers, negatives will be excluded
1619 while(in1>>iRun){
4d16db9c 1620 if(iRun>= kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
9a5c5b1e 1621 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1622 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
9748e967 1623 nRun++;
9a5c5b1e 1624 }
1625 else{
1626 Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
e84da0a5 1627 }
c38e3b95 1628 }
1629 }
1630
1631// Method 2: Declare existing data files (raw collections, xml collections, root file)
1632// If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1633// XML collections added via this method can be combined with the first method if
1634// the content is compatible (using or not tags)
1635// plugin->AddDataFile("tag.xml");
1636// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1637// Define alien work directory where all files will be copied. Relative to alien $HOME.
3878a941 1638 TString alien_workdir = "";
1639
1640 if (iAODanalysis) alien_workdir += "analysisAOD";
1641 else alien_workdir += "analysisESD";
1642 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1643 plugin->SetGridWorkingDir(alien_workdir.Data());
1644
c38e3b95 1645 // Declare alien output directory. Relative to working directory.
1646 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1647 plugin->SetGridOutputDir(kGridOutdir);
1648
1649 // Add external packages
1650 if (iJETAN||iDIJETAN) {
23adcac8 1651 plugin->AddExternalPackage("boost::v1_43_0");
1652 plugin->AddExternalPackage("cgal::v3.6");
1653 plugin->AddExternalPackage("fastjet::v2.4.2");
c38e3b95 1654 }
1655
1656
1657 // set extra libs before par file compilation
1658 anaLibs += kGridExtraFiles;
1659 anaLibs = anaLibs.Strip();
e84da0a5 1660 Printf("anaLibs %s",anaLibs.Data());
1661 Printf("anaLibsExtra %s",anaLibsExtra.Data());
1662
1663 if (anaLibs.Length()) plugin->SetAdditionalLibs(anaLibs.Data());
1664 if (anaLibsExtra.Length()) plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
c38e3b95 1665
1666 TString ana_sources = "";
1667 TString ana_add = "";
1668 if (kUsePAR && anaPars.Length()) {
1669 printf("%s\n", anaPars.Data());
1670 TObjArray *arr;
1671 TObjString *objstr;
1672 arr = anaPars.Tokenize(" ");
1673 TIter next(arr);
1674 while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1675 delete arr;
1676 }
1677
1678// Declare the analysis source files names separated by blancs. To be compiled runtime
1679// using ACLiC on the worker nodes.
1680 ana_sources = anaSources.Strip();
1681// Declare all libraries (other than the default ones for the framework. These will be
1682// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1683
1684 if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1685 plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
4721d8c5 1686 // Declare the output file names separated by blancs.
1687 // (can be like: file.root or file.root@ALICE::Niham::File)
c38e3b95 1688 plugin->SetMergeExcludes(kGridMergeExclude);
1689 plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1690 plugin->SetNrunsPerMaster(kGridRunsPerMaster);
9a5c5b1e 1691 plugin->SetMergeViaJDL(kPluginMergeViaJDL);
4721d8c5 1692 // Use fastread option
9a5c5b1e 1693 plugin->SetFastReadOption(kPluginFastReadOption);
4721d8c5 1694 // UseOverwrite mode
9a5c5b1e 1695 plugin->SetOverwriteMode(kPluginOverwriteMode);
4721d8c5 1696 // Optionally define the files to be archived.
1697 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
dc6a7461 1698 plugin->SetOutputToRunNo(kPluginOutputToRunNumber); // write the output to subdirs named after run number
c38e3b95 1699
1700 // Put default output files to archive
1701 TString listhists = "";
1702 TString listaods = "";
1703 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1704 TIter next(mgr->GetOutputs());
1705 AliAnalysisDataContainer *output;
1706 while ((output=(AliAnalysisDataContainer*)next())) {
1707 const char *filename = output->GetFileName();
1708 if (!(strcmp(filename, "default"))) {
53c63663 1709 if (!mgr->GetOutputEventHandler()) continue;
c38e3b95 1710 filename = mgr->GetOutputEventHandler()->GetOutputFileName();
e84da0a5 1711 if (listaods.Length()) listaods += " ";
c38e3b95 1712 listaods += filename;
c38e3b95 1713 } else {
e84da0a5 1714 if(!listhists.Contains(filename)){
1715 if (listhists.Length()) listhists += " ";
c38e3b95 1716 listhists += filename;
1717 }
1718 }
1719 }
53c63663 1720
53c63663 1721 if (mgr->GetExtraFiles().Length()) {
e84da0a5 1722 if (listaods.Length()) listaods += " ";
53c63663 1723 listaods += mgr->GetExtraFiles();
c38e3b95 1724 }
53c63663 1725
1726 // if we do not fill the aod we do not need to store it
4721d8c5 1727 // kGridMergeExclude = listaods;
e84da0a5 1728
4721d8c5 1729 if(kSaveAOD!=0){
1730 TString outputFiles = "";
1731 outputFiles += mgr->GetExtraFiles();
1732 if (listhists.Length()) outputFiles += " ";
1733 outputFiles += listhists;
e84da0a5 1734 plugin->SetDefaultOutputs(kFALSE);
4721d8c5 1735 Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1736 // remove
1737 // no harm done when we try to remove something that is not there :)
1738 if(!(kSaveAOD&(1<<0))){
1739 outputFiles.ReplaceAll("AliAOD.root ","");
1740 listaods.ReplaceAll("AliAOD.root ","");
1741 }
1742 if(!(kSaveAOD&(1<<1))){
1743 if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
1744 if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
1745
1746 }
1747 if(!(kSaveAOD&(1<<2))){
1748 if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1749 if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1750 }
1751 if(!(kSaveAOD&(1<<3))){
1752 if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1753 if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1754 }
1755
1756 //
1757 Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1758 plugin->SetOutputFiles(outputFiles.Data());
e84da0a5 1759 }
53c63663 1760
4721d8c5 1761 TString outputArchive;
4d5d766e 1762 outputArchive = Form("log_archive.zip:std*@%s","disk=1");
e84da0a5 1763 listaods.ReplaceAll(" ", ",");
1764 listhists.ReplaceAll(" ", ",");
4d5d766e 1765 if (listhists.Length()){
1766 outputArchive += " ";
1767 outputArchive += "root_archive.zip:";
1768 outputArchive += listhists;
1769 if (listaods.Length()){
1770 outputArchive += ",";
1771 outputArchive += listaods;
1772 }
1773 outputArchive += Form("@%s", kGridOutputStorages.Data());
1774 }
1775 else{
1776
1777 if (listaods.Length()){
1778 // we have only aod'ish output
1779 outputArchive += " ";
1780 outputArchive += "root_archive.zip:";
1781 outputArchive += listaods;
1782 outputArchive += Form("@%s", kGridOutputStorages.Data());
1783 }
1784 else{
1785 // no other outputs than std..
c38e3b95 1786 ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
4d5d766e 1787 }
c38e3b95 1788 }
4d5d766e 1789
17d96675 1790 plugin->SetDefaultOutputs(kFALSE);
c38e3b95 1791 plugin->SetOutputArchive(outputArchive);
17d96675 1792
4721d8c5 1793
4d5d766e 1794 // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
c38e3b95 1795 plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
4d5d766e 1796 // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
c38e3b95 1797 plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
4d5d766e 1798 // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
27cdf9c4 1799 // plugin->SetMaxInitFailed(5);
4d5d766e 1800 // Optionally resubmit threshold.
c8fb37dd 1801 // plugin->SetMasterResubmitThreshold(90);
4d5d766e 1802 // Optionally set time to live (default 30000 sec)
d4e8abc5 1803 plugin->SetTTL(54000); // 15h...
4d5d766e 1804 // Optionally set input format (default xml-single)
c38e3b95 1805 plugin->SetInputFormat("xml-single");
4d5d766e 1806 // Optionally modify the name of the generated JDL (default analysis.jdl)
c38e3b95 1807 plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
4d5d766e 1808 // Optionally modify the executable name (default analysis.sh)
c38e3b95 1809 plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
4d5d766e 1810 // Optionally modify job price (default 1)
c38e3b95 1811 plugin->SetPrice(1);
4d5d766e 1812 // Optionally modify split mode (default 'se')
c38e3b95 1813 plugin->SetSplitMode("se");
1814 return plugin;
1815}
1816
1817//______________________________________________________________________________
1818void WriteConfig()
1819{
1820// Write train configuration in a file. The file name has the format:
1821// train_[trainName]_ddMonthyyyy_time.C
1822 if (kUseDate) {
1823 gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
1824 ifstream fdate("date.tmp");
1825 if (!fdate.is_open()) {
1826 ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
1827 return;
1828 }
1829 const char date[64];
1830 fdate.getline(date,64);
1831 fdate.close();
1832 gSystem->Exec("rm date.tmp");
1833 kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
1834 } else {
1835 kTrainName = Form("train_%s", kTrainName.Data());
1836 }
1837 TString cdir = gSystem->WorkingDirectory();
1838 gSystem->MakeDirectory(kTrainName);
1839 gSystem->ChangeDirectory(kTrainName);
1840 ofstream out;
1841 out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
1842 if (out.bad()) {
1843 ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
1844 return;
1845 }
1846 out << "{" << endl;
1847 out << " kTrainName = " << "\"" << kTrainName.Data() << "\";" << endl;
1848 out << " kProofCluster = " << "\"" << kProofCluster.Data() << "\";" << endl;
1849 out << " kProofUseAFPAR = " << kProofUseAFPAR << ";" << endl;
1850 if (kProofUseAFPAR)
1851 out << " kProofAFversion = " << kProofAFversion.Data() << ";" << endl;
1852 out << " kProofDataSet = " << "\"" << kProofDataSet.Data() << "\";" << endl;
1853 out << " kPluginUse = " << kPluginUse << ";" << endl;
1854 out << " kUsePAR = " << kUsePAR << ";" << endl;
1855 out << " kUseCPAR = " << kUseCPAR << ";" << endl;
1856 out << " kPluginRootVersion = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
1857 out << " kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
1858 out << " kGridDatadir = " << "\"" << kGridDatadir.Data() << "\";" << endl;
1859 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1860 out << " kGridOutdir = " << "\"" << kGridOutdir.Data() << "\";" << endl;
1861 out << " kGridMaxMergeFiles = " << kGridMaxMergeFiles << ";" << endl;
1862 out << " kGridMergeExclude = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
1863 out << " kGridRunsPerMaster = " << kGridRunsPerMaster << ";" << endl;
1864 out << " kGridFilesPerJob = " << kGridFilesPerJob << ";" << endl;
1865 out << " kGridRunRange[0] = " << kGridRunRange[0] << ";" << endl;
1866 out << " kGridRunRange[1] = " << kGridRunRange[1] << ";" << endl;
1867 out << " kUseDebug = " << kUseDebug << ";" << endl;
1868 out << " kUseMC = " << kUseMC << ";" << endl;
1869 out << " kUseESDTags = " << kUseESDTags << ";" << endl;
1870 out << " kUseKinefilter = " << kUseKinefilter << ";" << endl;
1871 out << " kUseTR = " << kUseTR << ";" << endl;
1872 out << " kUseAODTags = " << kUseAODTags << ";" << endl;
1873 out << " kSaveTrain = " << "kFALSE;" << endl << endl;
1874 out << " // Analysis modules" << endl;
1875 out << " iAODanalysis = " << iAODanalysis << ";" << endl;
1876 out << " iAODhandler = " << iAODhandler << ";" << endl;
1877 out << " iESDfilter = " << iESDfilter << ";" << endl;
1878 out << " iJETAN = " << iJETAN << ";" << endl;
1879 out << "// Configuration fot the wagons" << endl;
1880 out << "}" << endl;
1881 ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
1882 gSystem->ChangeDirectory(cdir);
1883}
1884
1885//______________________________________________________________________________
1886Bool_t LoadConfig(const char *filename)
1887{
1888// Read train configuration from file
1889 if (gSystem->AccessPathName(filename)) {
1890 ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1891 return kFALSE;
1892 }
1893 gROOT->ProcessLine(Form(".x %s", filename));
1894 ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1895 return kTRUE;
1896}
1897
1898Bool_t PatchJDL(){
1899 Printf(">>> Patching JDL");
1900 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1901 AliAnalysisAlien* gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1902 TGridJDL *jdl = gridHandler->GetGridJDL();
1903 if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
1904 gridHandler->WriteJDL(kFALSE);
0971dabc 1905 Printf("<<< Patching JDL");
c38e3b95 1906 return kTRUE;
1907}
1908
1909Bool_t PatchAnalysisMacro(){
4721d8c5 1910 Printf(">>> Patching AnalysisMacro");
1911 gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
c38e3b95 1912
1913 ifstream in1;
1914 in1.open(Form("%s.C_tmp", kTrainName.Data()));
1915 char cLine[250];
1916 TString st;
1917 while(in1.getline(cLine,250)){
1918 st += cLine;
1919 st += "\n";
1920 }
4721d8c5 1921 Int_t index= -1;
c38e3b95 1922 index = st.Index("gSystem->Load(\"libPhysics\");");
1923 index += strlen("gSystem->Load(\"libPhysics\");");
4721d8c5 1924 /*
c38e3b95 1925 TObjArray *arr;
1926 TObjString *objstr;
1927 arr = anaLibs.Tokenize(" ");
1928 TIter next(arr);
4721d8c5 1929
c38e3b95 1930 add += "\n\n // added by CKB \n";
1931 while ((objstr=(TObjString*)next())){
e84da0a5 1932 if(objstr->GetString().Contains("PWG3"))continue;
c38e3b95 1933 if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
1934 }
1935 delete arr;
4721d8c5 1936 */
3878a941 1937 // add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
4721d8c5 1938 TString add = "";
1939
1940 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1941 add += "\n\n // added by CKB \n";
46534866 1942 if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
23adcac8 1943 add += "\n gSystem->AddIncludePath(\"./\"); \n";
f4132e7d 1944 add += "\n gSystem->SetFPEMask(); \n";
1945
1946
4721d8c5 1947 if(gGrid&&kPluginAliRootVersion.Length()==0){
1948 add += "\n // Dirty hack for TRD reference data \n";
1949 add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
1950 add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
1951 add += "\"); \n";
c38e3b95 1952 }
4721d8c5 1953 add += "// BKC \n\n";
1954 st.Insert(index,add.Data());
e84da0a5 1955
1956 if(kUseDebug){
23adcac8 1957 // st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
e84da0a5 1958 }
1959
4721d8c5 1960 if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
1961 index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
1962 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1963 st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
1964 }
c166d299 1965
46534866 1966 if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
1967 index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
1968 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1969 st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n // CKB comment out for own setting \n //");
1970 }
1971
c38e3b95 1972 ofstream out;
1973 out.open(Form("%s.C", kTrainName.Data()));
1974 if (out.bad()) {
1975 return kFALSE;
1976 }
1977 out << st << endl;
1978 Printf("<<< Patching AnalysisMacro");
4721d8c5 1979
1980
1981
1982
1983
1984 Printf(">>> Patching Merge Macro");
1985 gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
1986
1987 ifstream in2;
1988 in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
1989 TString st2;
1990 while(in2.getline(cLine,250)){
1991 st2 += cLine;
1992 st2 += "\n";
1993 }
1994 index = st2.Index("gSystem->Load(\"libPhysics\");");
1995 index += strlen("gSystem->Load(\"libPhysics\");");
1996 TString add2 = "";
23adcac8 1997 add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
4721d8c5 1998 if(gGrid&&kPluginAliRootVersion.Length()==0){
1999 add2 += "\n // Dirty hack for TRD reference data \n";
2000 add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2001 add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2002 add2 += "\"); \n";
2003 }
2004 add2 += "// BKC \n\n";
2005 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2006 st2.Insert(index,add.Data());
2007
2008
2009 if(kUseDebug){
23adcac8 2010 // st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
4721d8c5 2011 }
2012
2013 if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
46534866 2014 index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
4721d8c5 2015 if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2016 st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2017 }
2018
2019 // do not exclude the extra files from merign, this is done explicitly in this train script
92d850d5 2020 // index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2021 // if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2022 // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
4721d8c5 2023
2024
2025 ofstream out2;
2026 out2.open(Form("%s_merge.C", kTrainName.Data()));
2027 if (out2.bad()) {
2028 return kFALSE;
2029 }
2030 out2 << st2 << endl;
2031 Printf("<<< Patching Merging Macro");
2032
2033
2034
c38e3b95 2035 return kTRUE;
2036
2037}